Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16845 and CSW01_16850 are separated by 96 nucleotides CSW01_16850 and CSW01_16855 are separated by 228 nucleotides
CSW01_16845: CSW01_16845 - nuclease SbcCD subunit C, at 449,777 to 452,818
_16845
CSW01_16850: CSW01_16850 - hybrid sensor histidine kinase/response regulator, at 452,915 to 454,975
_16850
CSW01_16855: CSW01_16855 - CAI-1 autoinducer synthase, at 455,204 to 456,373
_16855
Position (kb)
452
453
454
455 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 451.950 kb on + strand, within CSW01_16845 at 451.957 kb on - strand, within CSW01_16845 at 452.060 kb on + strand, within CSW01_16845 at 452.078 kb on + strand, within CSW01_16845 at 452.177 kb on + strand, within CSW01_16845 at 452.354 kb on - strand, within CSW01_16845 at 452.354 kb on - strand, within CSW01_16845 at 452.494 kb on - strand, within CSW01_16845 at 452.593 kb on + strand at 452.601 kb on - strand at 452.601 kb on - strand at 452.750 kb on + strand at 452.791 kb on + strand at 452.868 kb on + strand at 452.979 kb on - strand at 453.085 kb on + strand at 453.140 kb on - strand, within CSW01_16850 at 453.159 kb on + strand, within CSW01_16850 at 453.199 kb on - strand, within CSW01_16850 at 453.284 kb on - strand, within CSW01_16850 at 453.510 kb on - strand, within CSW01_16850 at 453.799 kb on - strand, within CSW01_16850 at 453.851 kb on + strand, within CSW01_16850 at 453.859 kb on - strand, within CSW01_16850 at 453.864 kb on - strand, within CSW01_16850 at 453.946 kb on + strand, within CSW01_16850 at 453.954 kb on - strand, within CSW01_16850 at 454.121 kb on + strand, within CSW01_16850 at 454.364 kb on - strand, within CSW01_16850 at 454.364 kb on - strand, within CSW01_16850 at 454.405 kb on - strand, within CSW01_16850 at 454.593 kb on - strand, within CSW01_16850 at 454.728 kb on + strand, within CSW01_16850 at 454.736 kb on - strand, within CSW01_16850 at 454.821 kb on - strand at 454.831 kb on - strand at 454.862 kb on + strand at 454.862 kb on + strand at 454.870 kb on - strand at 454.870 kb on - strand at 454.870 kb on - strand at 454.881 kb on + strand at 454.891 kb on + strand at 454.899 kb on + strand at 454.907 kb on - strand at 454.983 kb on - strand at 454.983 kb on - strand at 454.983 kb on - strand at 454.997 kb on + strand at 455.084 kb on + strand at 455.084 kb on + strand at 455.236 kb on + strand at 455.236 kb on + strand at 455.241 kb on + strand at 455.244 kb on - strand at 455.249 kb on - strand at 455.249 kb on - strand at 455.249 kb on - strand at 455.281 kb on + strand at 455.336 kb on + strand, within CSW01_16855 at 455.336 kb on + strand, within CSW01_16855 at 455.336 kb on + strand, within CSW01_16855 at 455.336 kb on + strand, within CSW01_16855 at 455.336 kb on + strand, within CSW01_16855 at 455.336 kb on + strand, within CSW01_16855 at 455.336 kb on + strand, within CSW01_16855 at 455.336 kb on + strand, within CSW01_16855 at 455.344 kb on - strand, within CSW01_16855 at 455.344 kb on - strand, within CSW01_16855 at 455.344 kb on - strand, within CSW01_16855 at 455.344 kb on - strand, within CSW01_16855 at 455.348 kb on + strand, within CSW01_16855 at 455.364 kb on - strand, within CSW01_16855 at 455.364 kb on - strand, within CSW01_16855 at 455.443 kb on + strand, within CSW01_16855 at 455.459 kb on + strand, within CSW01_16855 at 455.565 kb on - strand, within CSW01_16855 at 455.567 kb on - strand, within CSW01_16855 at 455.631 kb on - strand, within CSW01_16855 at 455.636 kb on - strand, within CSW01_16855 at 455.642 kb on - strand, within CSW01_16855 at 455.647 kb on - strand, within CSW01_16855 at 455.663 kb on + strand, within CSW01_16855 at 455.664 kb on - strand, within CSW01_16855 at 455.695 kb on + strand, within CSW01_16855 at 455.695 kb on + strand, within CSW01_16855 at 455.695 kb on + strand, within CSW01_16855 at 455.707 kb on + strand, within CSW01_16855 at 455.740 kb on + strand, within CSW01_16855 at 455.748 kb on - strand, within CSW01_16855 at 455.751 kb on + strand, within CSW01_16855 at 455.757 kb on + strand, within CSW01_16855 at 455.786 kb on + strand, within CSW01_16855 at 455.786 kb on + strand, within CSW01_16855 at 455.786 kb on + strand, within CSW01_16855 at 455.792 kb on - strand, within CSW01_16855 at 455.794 kb on - strand, within CSW01_16855 at 455.841 kb on + strand, within CSW01_16855 at 455.877 kb on - strand, within CSW01_16855 at 455.933 kb on + strand, within CSW01_16855 at 455.933 kb on + strand, within CSW01_16855 at 455.941 kb on - strand, within CSW01_16855 at 455.953 kb on - strand, within CSW01_16855 at 455.967 kb on + strand, within CSW01_16855
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 451,950 + CSW01_16845 0.71 +2.1 451,957 - CSW01_16845 0.72 +1.7 452,060 + CSW01_16845 0.75 -0.9 452,078 + CSW01_16845 0.76 +1.7 452,177 + CSW01_16845 0.79 +2.9 452,354 - CSW01_16845 0.85 +1.8 452,354 - CSW01_16845 0.85 +0.5 452,494 - CSW01_16845 0.89 -2.4 452,593 + +1.2 452,601 - +0.1 452,601 - -1.2 452,750 + -0.8 452,791 + -0.2 452,868 + -0.5 452,979 - -0.1 453,085 + -0.4 453,140 - CSW01_16850 0.11 -1.2 453,159 + CSW01_16850 0.12 +0.1 453,199 - CSW01_16850 0.14 -0.9 453,284 - CSW01_16850 0.18 -0.5 453,510 - CSW01_16850 0.29 -0.7 453,799 - CSW01_16850 0.43 -2.5 453,851 + CSW01_16850 0.45 -1.6 453,859 - CSW01_16850 0.46 -3.2 453,864 - CSW01_16850 0.46 -1.7 453,946 + CSW01_16850 0.50 -3.5 453,954 - CSW01_16850 0.50 -0.1 454,121 + CSW01_16850 0.59 -1.9 454,364 - CSW01_16850 0.70 -0.7 454,364 - CSW01_16850 0.70 -0.2 454,405 - CSW01_16850 0.72 +0.1 454,593 - CSW01_16850 0.81 +0.2 454,728 + CSW01_16850 0.88 +0.0 454,736 - CSW01_16850 0.88 +1.1 454,821 - +2.1 454,831 - +0.4 454,862 + -1.9 454,862 + -0.3 454,870 - -0.2 454,870 - -2.4 454,870 - +0.1 454,881 + +1.1 454,891 + +1.6 454,899 + -0.6 454,907 - +0.5 454,983 - +0.8 454,983 - +1.2 454,983 - +0.1 454,997 + +0.8 455,084 + +0.2 455,084 + +0.4 455,236 + -0.8 455,236 + -1.2 455,241 + -2.2 455,244 - -0.9 455,249 - -2.5 455,249 - +0.4 455,249 - +0.2 455,281 + -2.9 455,336 + CSW01_16855 0.11 +1.2 455,336 + CSW01_16855 0.11 +0.9 455,336 + CSW01_16855 0.11 +0.1 455,336 + CSW01_16855 0.11 +1.0 455,336 + CSW01_16855 0.11 +0.1 455,336 + CSW01_16855 0.11 -0.8 455,336 + CSW01_16855 0.11 -0.6 455,336 + CSW01_16855 0.11 +0.1 455,344 - CSW01_16855 0.12 +0.4 455,344 - CSW01_16855 0.12 -1.4 455,344 - CSW01_16855 0.12 +0.5 455,344 - CSW01_16855 0.12 +1.4 455,348 + CSW01_16855 0.12 -0.6 455,364 - CSW01_16855 0.14 +1.1 455,364 - CSW01_16855 0.14 -2.7 455,443 + CSW01_16855 0.20 -0.9 455,459 + CSW01_16855 0.22 -0.4 455,565 - CSW01_16855 0.31 -2.8 455,567 - CSW01_16855 0.31 -0.4 455,631 - CSW01_16855 0.36 +0.5 455,636 - CSW01_16855 0.37 -0.4 455,642 - CSW01_16855 0.37 -0.1 455,647 - CSW01_16855 0.38 -3.0 455,663 + CSW01_16855 0.39 -2.1 455,664 - CSW01_16855 0.39 -3.3 455,695 + CSW01_16855 0.42 +0.1 455,695 + CSW01_16855 0.42 -2.4 455,695 + CSW01_16855 0.42 -0.3 455,707 + CSW01_16855 0.43 +0.7 455,740 + CSW01_16855 0.46 -0.1 455,748 - CSW01_16855 0.46 +0.8 455,751 + CSW01_16855 0.47 -1.8 455,757 + CSW01_16855 0.47 -0.3 455,786 + CSW01_16855 0.50 -0.8 455,786 + CSW01_16855 0.50 -1.9 455,786 + CSW01_16855 0.50 +1.3 455,792 - CSW01_16855 0.50 +0.5 455,794 - CSW01_16855 0.50 +1.2 455,841 + CSW01_16855 0.54 -0.5 455,877 - CSW01_16855 0.58 +0.9 455,933 + CSW01_16855 0.62 -2.3 455,933 + CSW01_16855 0.62 +0.7 455,941 - CSW01_16855 0.63 -0.9 455,953 - CSW01_16855 0.64 -1.2 455,967 + CSW01_16855 0.65 -1.1
Or see this region's nucleotide sequence