Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16850

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16845 and CSW01_16850 are separated by 96 nucleotidesCSW01_16850 and CSW01_16855 are separated by 228 nucleotides CSW01_16845: CSW01_16845 - nuclease SbcCD subunit C, at 449,777 to 452,818 _16845 CSW01_16850: CSW01_16850 - hybrid sensor histidine kinase/response regulator, at 452,915 to 454,975 _16850 CSW01_16855: CSW01_16855 - CAI-1 autoinducer synthase, at 455,204 to 456,373 _16855 Position (kb) 452 453 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 451.950 kb on + strand, within CSW01_16845at 451.957 kb on - strand, within CSW01_16845at 452.060 kb on + strand, within CSW01_16845at 452.078 kb on + strand, within CSW01_16845at 452.177 kb on + strand, within CSW01_16845at 452.354 kb on - strand, within CSW01_16845at 452.354 kb on - strand, within CSW01_16845at 452.494 kb on - strand, within CSW01_16845at 452.593 kb on + strandat 452.601 kb on - strandat 452.601 kb on - strandat 452.750 kb on + strandat 452.791 kb on + strandat 452.868 kb on + strandat 452.979 kb on - strandat 453.085 kb on + strandat 453.140 kb on - strand, within CSW01_16850at 453.159 kb on + strand, within CSW01_16850at 453.199 kb on - strand, within CSW01_16850at 453.284 kb on - strand, within CSW01_16850at 453.510 kb on - strand, within CSW01_16850at 453.799 kb on - strand, within CSW01_16850at 453.851 kb on + strand, within CSW01_16850at 453.859 kb on - strand, within CSW01_16850at 453.864 kb on - strand, within CSW01_16850at 453.946 kb on + strand, within CSW01_16850at 453.954 kb on - strand, within CSW01_16850at 454.121 kb on + strand, within CSW01_16850at 454.364 kb on - strand, within CSW01_16850at 454.364 kb on - strand, within CSW01_16850at 454.405 kb on - strand, within CSW01_16850at 454.593 kb on - strand, within CSW01_16850at 454.728 kb on + strand, within CSW01_16850at 454.736 kb on - strand, within CSW01_16850at 454.821 kb on - strandat 454.831 kb on - strandat 454.862 kb on + strandat 454.862 kb on + strandat 454.870 kb on - strandat 454.870 kb on - strandat 454.870 kb on - strandat 454.881 kb on + strandat 454.891 kb on + strandat 454.899 kb on + strandat 454.907 kb on - strandat 454.983 kb on - strandat 454.983 kb on - strandat 454.983 kb on - strandat 454.997 kb on + strandat 455.084 kb on + strandat 455.084 kb on + strandat 455.236 kb on + strandat 455.236 kb on + strandat 455.241 kb on + strandat 455.244 kb on - strandat 455.249 kb on - strandat 455.249 kb on - strandat 455.249 kb on - strandat 455.281 kb on + strandat 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.344 kb on - strand, within CSW01_16855at 455.344 kb on - strand, within CSW01_16855at 455.344 kb on - strand, within CSW01_16855at 455.344 kb on - strand, within CSW01_16855at 455.348 kb on + strand, within CSW01_16855at 455.364 kb on - strand, within CSW01_16855at 455.364 kb on - strand, within CSW01_16855at 455.443 kb on + strand, within CSW01_16855at 455.459 kb on + strand, within CSW01_16855at 455.565 kb on - strand, within CSW01_16855at 455.567 kb on - strand, within CSW01_16855at 455.631 kb on - strand, within CSW01_16855at 455.636 kb on - strand, within CSW01_16855at 455.642 kb on - strand, within CSW01_16855at 455.647 kb on - strand, within CSW01_16855at 455.663 kb on + strand, within CSW01_16855at 455.664 kb on - strand, within CSW01_16855at 455.695 kb on + strand, within CSW01_16855at 455.695 kb on + strand, within CSW01_16855at 455.695 kb on + strand, within CSW01_16855at 455.707 kb on + strand, within CSW01_16855at 455.740 kb on + strand, within CSW01_16855at 455.748 kb on - strand, within CSW01_16855at 455.751 kb on + strand, within CSW01_16855at 455.757 kb on + strand, within CSW01_16855at 455.786 kb on + strand, within CSW01_16855at 455.786 kb on + strand, within CSW01_16855at 455.786 kb on + strand, within CSW01_16855at 455.792 kb on - strand, within CSW01_16855at 455.794 kb on - strand, within CSW01_16855at 455.841 kb on + strand, within CSW01_16855at 455.877 kb on - strand, within CSW01_16855at 455.933 kb on + strand, within CSW01_16855at 455.933 kb on + strand, within CSW01_16855at 455.941 kb on - strand, within CSW01_16855at 455.953 kb on - strand, within CSW01_16855at 455.967 kb on + strand, within CSW01_16855

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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451,950 + CSW01_16845 0.71 +2.1
451,957 - CSW01_16845 0.72 +1.7
452,060 + CSW01_16845 0.75 -0.9
452,078 + CSW01_16845 0.76 +1.7
452,177 + CSW01_16845 0.79 +2.9
452,354 - CSW01_16845 0.85 +1.8
452,354 - CSW01_16845 0.85 +0.5
452,494 - CSW01_16845 0.89 -2.4
452,593 + +1.2
452,601 - +0.1
452,601 - -1.2
452,750 + -0.8
452,791 + -0.2
452,868 + -0.5
452,979 - -0.1
453,085 + -0.4
453,140 - CSW01_16850 0.11 -1.2
453,159 + CSW01_16850 0.12 +0.1
453,199 - CSW01_16850 0.14 -0.9
453,284 - CSW01_16850 0.18 -0.5
453,510 - CSW01_16850 0.29 -0.7
453,799 - CSW01_16850 0.43 -2.5
453,851 + CSW01_16850 0.45 -1.6
453,859 - CSW01_16850 0.46 -3.2
453,864 - CSW01_16850 0.46 -1.7
453,946 + CSW01_16850 0.50 -3.5
453,954 - CSW01_16850 0.50 -0.1
454,121 + CSW01_16850 0.59 -1.9
454,364 - CSW01_16850 0.70 -0.7
454,364 - CSW01_16850 0.70 -0.2
454,405 - CSW01_16850 0.72 +0.1
454,593 - CSW01_16850 0.81 +0.2
454,728 + CSW01_16850 0.88 +0.0
454,736 - CSW01_16850 0.88 +1.1
454,821 - +2.1
454,831 - +0.4
454,862 + -1.9
454,862 + -0.3
454,870 - -0.2
454,870 - -2.4
454,870 - +0.1
454,881 + +1.1
454,891 + +1.6
454,899 + -0.6
454,907 - +0.5
454,983 - +0.8
454,983 - +1.2
454,983 - +0.1
454,997 + +0.8
455,084 + +0.2
455,084 + +0.4
455,236 + -0.8
455,236 + -1.2
455,241 + -2.2
455,244 - -0.9
455,249 - -2.5
455,249 - +0.4
455,249 - +0.2
455,281 + -2.9
455,336 + CSW01_16855 0.11 +1.2
455,336 + CSW01_16855 0.11 +0.9
455,336 + CSW01_16855 0.11 +0.1
455,336 + CSW01_16855 0.11 +1.0
455,336 + CSW01_16855 0.11 +0.1
455,336 + CSW01_16855 0.11 -0.8
455,336 + CSW01_16855 0.11 -0.6
455,336 + CSW01_16855 0.11 +0.1
455,344 - CSW01_16855 0.12 +0.4
455,344 - CSW01_16855 0.12 -1.4
455,344 - CSW01_16855 0.12 +0.5
455,344 - CSW01_16855 0.12 +1.4
455,348 + CSW01_16855 0.12 -0.6
455,364 - CSW01_16855 0.14 +1.1
455,364 - CSW01_16855 0.14 -2.7
455,443 + CSW01_16855 0.20 -0.9
455,459 + CSW01_16855 0.22 -0.4
455,565 - CSW01_16855 0.31 -2.8
455,567 - CSW01_16855 0.31 -0.4
455,631 - CSW01_16855 0.36 +0.5
455,636 - CSW01_16855 0.37 -0.4
455,642 - CSW01_16855 0.37 -0.1
455,647 - CSW01_16855 0.38 -3.0
455,663 + CSW01_16855 0.39 -2.1
455,664 - CSW01_16855 0.39 -3.3
455,695 + CSW01_16855 0.42 +0.1
455,695 + CSW01_16855 0.42 -2.4
455,695 + CSW01_16855 0.42 -0.3
455,707 + CSW01_16855 0.43 +0.7
455,740 + CSW01_16855 0.46 -0.1
455,748 - CSW01_16855 0.46 +0.8
455,751 + CSW01_16855 0.47 -1.8
455,757 + CSW01_16855 0.47 -0.3
455,786 + CSW01_16855 0.50 -0.8
455,786 + CSW01_16855 0.50 -1.9
455,786 + CSW01_16855 0.50 +1.3
455,792 - CSW01_16855 0.50 +0.5
455,794 - CSW01_16855 0.50 +1.2
455,841 + CSW01_16855 0.54 -0.5
455,877 - CSW01_16855 0.58 +0.9
455,933 + CSW01_16855 0.62 -2.3
455,933 + CSW01_16855 0.62 +0.7
455,941 - CSW01_16855 0.63 -0.9
455,953 - CSW01_16855 0.64 -1.2
455,967 + CSW01_16855 0.65 -1.1

Or see this region's nucleotide sequence