Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16830

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16820 and CSW01_16825 are separated by 12 nucleotidesCSW01_16825 and CSW01_16830 are separated by 10 nucleotidesCSW01_16830 and CSW01_16835 are separated by 338 nucleotides CSW01_16820: CSW01_16820 - PTS fructose transporter subunit IIBC, at 443,342 to 445,084 _16820 CSW01_16825: CSW01_16825 - 1-phosphofructokinase, at 445,097 to 446,050 _16825 CSW01_16830: CSW01_16830 - bifunctional PTS fructose transporter subunit IIA/HPr protein, at 446,061 to 447,263 _16830 CSW01_16835: CSW01_16835 - catabolite repressor/activator, at 447,602 to 448,582 _16835 Position (kb) 446 447 448Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 445.088 kb on + strandat 445.096 kb on - strandat 445.154 kb on - strandat 445.174 kb on + strandat 445.177 kb on - strandat 445.234 kb on - strand, within CSW01_16825at 445.265 kb on + strand, within CSW01_16825at 445.268 kb on - strand, within CSW01_16825at 445.273 kb on - strand, within CSW01_16825at 445.273 kb on - strand, within CSW01_16825at 445.273 kb on - strand, within CSW01_16825at 445.456 kb on + strand, within CSW01_16825at 445.556 kb on - strand, within CSW01_16825at 445.594 kb on + strand, within CSW01_16825at 445.599 kb on + strand, within CSW01_16825at 445.607 kb on - strand, within CSW01_16825at 445.607 kb on - strand, within CSW01_16825at 445.612 kb on - strand, within CSW01_16825at 445.671 kb on - strand, within CSW01_16825at 445.714 kb on + strand, within CSW01_16825at 445.752 kb on - strand, within CSW01_16825at 445.823 kb on - strand, within CSW01_16825at 445.918 kb on + strand, within CSW01_16825at 445.985 kb on - strandat 445.995 kb on - strandat 445.995 kb on - strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.078 kb on - strandat 446.225 kb on + strand, within CSW01_16830at 446.266 kb on + strand, within CSW01_16830at 446.335 kb on - strand, within CSW01_16830at 446.437 kb on + strand, within CSW01_16830at 446.464 kb on + strand, within CSW01_16830at 446.510 kb on + strand, within CSW01_16830at 446.510 kb on + strand, within CSW01_16830at 446.510 kb on + strand, within CSW01_16830at 446.510 kb on + strand, within CSW01_16830at 446.518 kb on + strand, within CSW01_16830at 446.518 kb on - strand, within CSW01_16830at 446.518 kb on - strand, within CSW01_16830at 446.520 kb on + strand, within CSW01_16830at 446.526 kb on - strand, within CSW01_16830at 446.526 kb on - strand, within CSW01_16830at 446.526 kb on - strand, within CSW01_16830at 446.542 kb on + strand, within CSW01_16830at 446.557 kb on + strand, within CSW01_16830at 446.756 kb on + strand, within CSW01_16830at 446.766 kb on + strand, within CSW01_16830at 446.766 kb on + strand, within CSW01_16830at 446.810 kb on - strand, within CSW01_16830at 446.834 kb on + strand, within CSW01_16830at 446.915 kb on + strand, within CSW01_16830at 446.925 kb on - strand, within CSW01_16830at 446.930 kb on + strand, within CSW01_16830at 446.938 kb on - strand, within CSW01_16830at 446.938 kb on - strand, within CSW01_16830at 447.001 kb on + strand, within CSW01_16830at 447.024 kb on + strand, within CSW01_16830at 447.032 kb on - strand, within CSW01_16830at 447.056 kb on + strand, within CSW01_16830at 447.064 kb on - strand, within CSW01_16830at 447.114 kb on + strand, within CSW01_16830at 447.114 kb on + strand, within CSW01_16830at 447.150 kb on + strandat 447.222 kb on + strandat 447.296 kb on - strandat 447.324 kb on + strandat 447.446 kb on + strandat 447.613 kb on - strandat 447.691 kb on - strandat 447.784 kb on - strand, within CSW01_16835at 447.846 kb on + strand, within CSW01_16835at 447.935 kb on + strand, within CSW01_16835at 447.936 kb on - strand, within CSW01_16835at 448.063 kb on + strand, within CSW01_16835at 448.132 kb on + strand, within CSW01_16835at 448.151 kb on - strand, within CSW01_16835at 448.199 kb on + strand, within CSW01_16835at 448.212 kb on + strand, within CSW01_16835at 448.212 kb on + strand, within CSW01_16835at 448.231 kb on + strand, within CSW01_16835at 448.243 kb on + strand, within CSW01_16835at 448.251 kb on - strand, within CSW01_16835

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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445,088 + +1.0
445,096 - -1.3
445,154 - +1.8
445,174 + +0.2
445,177 - +0.4
445,234 - CSW01_16825 0.14 -0.6
445,265 + CSW01_16825 0.18 -1.3
445,268 - CSW01_16825 0.18 -2.3
445,273 - CSW01_16825 0.18 +1.7
445,273 - CSW01_16825 0.18 -0.2
445,273 - CSW01_16825 0.18 +0.3
445,456 + CSW01_16825 0.38 -2.8
445,556 - CSW01_16825 0.48 -1.1
445,594 + CSW01_16825 0.52 +0.4
445,599 + CSW01_16825 0.53 +0.0
445,607 - CSW01_16825 0.53 -1.3
445,607 - CSW01_16825 0.53 -0.8
445,612 - CSW01_16825 0.54 -0.0
445,671 - CSW01_16825 0.60 +2.2
445,714 + CSW01_16825 0.65 +1.3
445,752 - CSW01_16825 0.69 -0.1
445,823 - CSW01_16825 0.76 +0.1
445,918 + CSW01_16825 0.86 +0.5
445,985 - -2.2
445,995 - -2.9
445,995 - +0.4
446,058 + -3.0
446,058 + -1.1
446,058 + +0.5
446,058 + +1.2
446,058 + -1.8
446,058 + +0.4
446,058 + -2.9
446,058 + +0.6
446,066 - -2.6
446,066 - +2.2
446,066 - -0.8
446,066 - +0.6
446,066 - +0.4
446,066 - +2.1
446,066 - +0.4
446,066 - -2.5
446,078 - -2.3
446,225 + CSW01_16830 0.14 -0.2
446,266 + CSW01_16830 0.17 +0.4
446,335 - CSW01_16830 0.23 -1.0
446,437 + CSW01_16830 0.31 +0.8
446,464 + CSW01_16830 0.33 -1.4
446,510 + CSW01_16830 0.37 -1.5
446,510 + CSW01_16830 0.37 -1.9
446,510 + CSW01_16830 0.37 +0.1
446,510 + CSW01_16830 0.37 -2.9
446,518 + CSW01_16830 0.38 +1.0
446,518 - CSW01_16830 0.38 -0.3
446,518 - CSW01_16830 0.38 -2.9
446,520 + CSW01_16830 0.38 +0.6
446,526 - CSW01_16830 0.39 +1.1
446,526 - CSW01_16830 0.39 -1.6
446,526 - CSW01_16830 0.39 +0.8
446,542 + CSW01_16830 0.40 -0.9
446,557 + CSW01_16830 0.41 -1.1
446,756 + CSW01_16830 0.58 -1.7
446,766 + CSW01_16830 0.59 +0.1
446,766 + CSW01_16830 0.59 -2.1
446,810 - CSW01_16830 0.62 -1.4
446,834 + CSW01_16830 0.64 -0.9
446,915 + CSW01_16830 0.71 +1.7
446,925 - CSW01_16830 0.72 +0.8
446,930 + CSW01_16830 0.72 -0.9
446,938 - CSW01_16830 0.73 -2.4
446,938 - CSW01_16830 0.73 -0.2
447,001 + CSW01_16830 0.78 +1.2
447,024 + CSW01_16830 0.80 +0.3
447,032 - CSW01_16830 0.81 -0.5
447,056 + CSW01_16830 0.83 +1.6
447,064 - CSW01_16830 0.83 -2.2
447,114 + CSW01_16830 0.88 +0.5
447,114 + CSW01_16830 0.88 -2.8
447,150 + +1.1
447,222 + -0.7
447,296 - -2.1
447,324 + +0.7
447,446 + -0.1
447,613 - -0.3
447,691 - -2.8
447,784 - CSW01_16835 0.19 -2.9
447,846 + CSW01_16835 0.25 +0.4
447,935 + CSW01_16835 0.34 -2.8
447,936 - CSW01_16835 0.34 -3.4
448,063 + CSW01_16835 0.47 -3.1
448,132 + CSW01_16835 0.54 -3.2
448,151 - CSW01_16835 0.56 -0.4
448,199 + CSW01_16835 0.61 -0.1
448,212 + CSW01_16835 0.62 -1.9
448,212 + CSW01_16835 0.62 -2.4
448,231 + CSW01_16835 0.64 -1.5
448,243 + CSW01_16835 0.65 -2.7
448,251 - CSW01_16835 0.66 -1.4

Or see this region's nucleotide sequence