Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16710 and CSW01_16715 are separated by 43 nucleotides CSW01_16715 and CSW01_16720 are separated by 63 nucleotides CSW01_16720 and CSW01_16725 are separated by 174 nucleotides CSW01_16725 and CSW01_16730 are separated by 68 nucleotides CSW01_16730 and CSW01_16735 are separated by 185 nucleotides
CSW01_16710: CSW01_16710 - acetyltransferase, at 426,188 to 426,472
_16710
CSW01_16715: CSW01_16715 - IS200/IS605 family transposase, at 426,516 to 426,953
_16715
CSW01_16720: CSW01_16720 - GNAT family N-acetyltransferase, at 427,017 to 427,235
_16720
CSW01_16725: CSW01_16725 - DUF3800 domain-containing protein, at 427,410 to 428,282
_16725
CSW01_16730: CSW01_16730 - glutathione S-transferase, at 428,351 to 429,031
_16730
CSW01_16735: CSW01_16735 - DUF4160 domain-containing protein, at 429,217 to 429,492
_16735
Position (kb) 427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 427.232 kb on - strand at 427.250 kb on - strand at 427.250 kb on - strand at 427.533 kb on - strand, within CSW01_16725 at 427.603 kb on - strand, within CSW01_16725 at 427.628 kb on + strand, within CSW01_16725 at 427.679 kb on + strand, within CSW01_16725 at 427.713 kb on + strand, within CSW01_16725 at 427.713 kb on + strand, within CSW01_16725 at 427.721 kb on - strand, within CSW01_16725 at 427.721 kb on - strand, within CSW01_16725 at 427.875 kb on + strand, within CSW01_16725 at 427.875 kb on + strand, within CSW01_16725 at 427.875 kb on + strand, within CSW01_16725 at 427.875 kb on + strand, within CSW01_16725 at 427.883 kb on - strand, within CSW01_16725 at 427.883 kb on - strand, within CSW01_16725 at 427.895 kb on + strand, within CSW01_16725 at 427.895 kb on - strand, within CSW01_16725 at 427.895 kb on - strand, within CSW01_16725 at 427.902 kb on + strand, within CSW01_16725 at 427.956 kb on + strand, within CSW01_16725 at 428.353 kb on + strand at 428.458 kb on + strand, within CSW01_16730 at 428.467 kb on - strand, within CSW01_16730 at 428.664 kb on + strand, within CSW01_16730 at 428.684 kb on - strand, within CSW01_16730 at 428.711 kb on + strand, within CSW01_16730 at 428.744 kb on + strand, within CSW01_16730 at 428.752 kb on - strand, within CSW01_16730 at 428.759 kb on - strand, within CSW01_16730
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 427,232 - -1.5 427,250 - -1.8 427,250 - +0.5 427,533 - CSW01_16725 0.14 +1.2 427,603 - CSW01_16725 0.22 -0.8 427,628 + CSW01_16725 0.25 -3.4 427,679 + CSW01_16725 0.31 -0.4 427,713 + CSW01_16725 0.35 +0.8 427,713 + CSW01_16725 0.35 -0.6 427,721 - CSW01_16725 0.36 -2.3 427,721 - CSW01_16725 0.36 -0.7 427,875 + CSW01_16725 0.53 +0.2 427,875 + CSW01_16725 0.53 +0.1 427,875 + CSW01_16725 0.53 -1.3 427,875 + CSW01_16725 0.53 +2.1 427,883 - CSW01_16725 0.54 +0.3 427,883 - CSW01_16725 0.54 +1.0 427,895 + CSW01_16725 0.56 -0.6 427,895 - CSW01_16725 0.56 -0.5 427,895 - CSW01_16725 0.56 -0.3 427,902 + CSW01_16725 0.56 +0.2 427,956 + CSW01_16725 0.63 +0.7 428,353 + +0.8 428,458 + CSW01_16730 0.16 +0.6 428,467 - CSW01_16730 0.17 -0.9 428,664 + CSW01_16730 0.46 -0.4 428,684 - CSW01_16730 0.49 +1.5 428,711 + CSW01_16730 0.53 -1.0 428,744 + CSW01_16730 0.58 +0.1 428,752 - CSW01_16730 0.59 +0.3 428,759 - CSW01_16730 0.60 +0.1
Or see this region's nucleotide sequence