Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16435

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16425 and CSW01_16430 are separated by 137 nucleotidesCSW01_16430 and CSW01_16435 are separated by 1 nucleotidesCSW01_16435 and CSW01_16440 are separated by 79 nucleotidesCSW01_16440 and CSW01_16445 are separated by 99 nucleotides CSW01_16425: CSW01_16425 - hypothetical protein, at 400,680 to 401,210 _16425 CSW01_16430: CSW01_16430 - hypothetical protein, at 401,348 to 401,848 _16430 CSW01_16435: CSW01_16435 - DUF3265 domain-containing protein, at 401,850 to 401,924 _16435 CSW01_16440: CSW01_16440 - hypothetical protein, at 402,004 to 402,401 _16440 CSW01_16445: CSW01_16445 - hypothetical protein, at 402,501 to 402,965 _16445 Position (kb) 401 402Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 400.854 kb on + strand, within CSW01_16425at 400.863 kb on + strand, within CSW01_16425at 400.863 kb on + strand, within CSW01_16425at 400.871 kb on - strand, within CSW01_16425at 400.871 kb on - strand, within CSW01_16425at 400.871 kb on - strand, within CSW01_16425at 400.975 kb on + strand, within CSW01_16425at 400.988 kb on - strand, within CSW01_16425at 401.085 kb on - strand, within CSW01_16425at 401.103 kb on + strand, within CSW01_16425at 401.111 kb on - strand, within CSW01_16425at 401.111 kb on - strand, within CSW01_16425at 401.150 kb on + strand, within CSW01_16425at 401.163 kb on + strandat 401.225 kb on - strandat 401.225 kb on - strandat 401.225 kb on - strandat 401.277 kb on - strandat 401.277 kb on - strandat 401.312 kb on + strandat 401.314 kb on + strandat 401.315 kb on + strandat 401.323 kb on - strandat 401.325 kb on + strandat 401.325 kb on + strandat 401.339 kb on - strandat 401.406 kb on + strand, within CSW01_16430at 401.433 kb on + strand, within CSW01_16430at 401.496 kb on + strand, within CSW01_16430at 401.507 kb on + strand, within CSW01_16430at 401.552 kb on + strand, within CSW01_16430at 401.574 kb on + strand, within CSW01_16430at 401.574 kb on + strand, within CSW01_16430at 401.580 kb on + strand, within CSW01_16430at 401.582 kb on + strand, within CSW01_16430at 401.590 kb on - strand, within CSW01_16430at 401.673 kb on + strand, within CSW01_16430at 401.681 kb on - strand, within CSW01_16430at 401.681 kb on - strand, within CSW01_16430at 401.681 kb on - strand, within CSW01_16430at 401.708 kb on - strand, within CSW01_16430at 401.796 kb on - strand, within CSW01_16430at 401.841 kb on + strandat 401.913 kb on - strand, within CSW01_16435at 401.933 kb on + strandat 401.956 kb on + strandat 401.956 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 402.063 kb on + strand, within CSW01_16440at 402.087 kb on - strand, within CSW01_16440at 402.087 kb on - strand, within CSW01_16440at 402.115 kb on + strand, within CSW01_16440at 402.146 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.287 kb on + strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.317 kb on - strand, within CSW01_16440at 402.317 kb on - strand, within CSW01_16440at 402.317 kb on - strand, within CSW01_16440at 402.327 kb on - strand, within CSW01_16440at 402.375 kb on - strandat 402.437 kb on + strandat 402.450 kb on - strandat 402.452 kb on + strandat 402.460 kb on - strandat 402.460 kb on - strandat 402.460 kb on - strandat 402.460 kb on - strandat 402.467 kb on - strandat 402.597 kb on + strand, within CSW01_16445at 402.597 kb on + strand, within CSW01_16445at 402.605 kb on - strand, within CSW01_16445at 402.605 kb on - strand, within CSW01_16445at 402.605 kb on - strand, within CSW01_16445at 402.641 kb on + strand, within CSW01_16445at 402.642 kb on + strand, within CSW01_16445at 402.645 kb on - strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.655 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.749 kb on + strand, within CSW01_16445at 402.749 kb on + strand, within CSW01_16445at 402.757 kb on - strand, within CSW01_16445at 402.757 kb on - strand, within CSW01_16445at 402.762 kb on - strand, within CSW01_16445at 402.767 kb on + strand, within CSW01_16445at 402.801 kb on + strand, within CSW01_16445at 402.821 kb on - strand, within CSW01_16445at 402.902 kb on + strand, within CSW01_16445

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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400,854 + CSW01_16425 0.33 -2.7
400,863 + CSW01_16425 0.34 +2.7
400,863 + CSW01_16425 0.34 +0.7
400,871 - CSW01_16425 0.36 -0.9
400,871 - CSW01_16425 0.36 +1.2
400,871 - CSW01_16425 0.36 +0.9
400,975 + CSW01_16425 0.56 +0.9
400,988 - CSW01_16425 0.58 -0.2
401,085 - CSW01_16425 0.76 +0.4
401,103 + CSW01_16425 0.80 -0.4
401,111 - CSW01_16425 0.81 -1.2
401,111 - CSW01_16425 0.81 -0.1
401,150 + CSW01_16425 0.89 +0.8
401,163 + +0.1
401,225 - -2.1
401,225 - +1.4
401,225 - -0.5
401,277 - -0.6
401,277 - -0.7
401,312 + +1.5
401,314 + +1.5
401,315 + +0.2
401,323 - -1.3
401,325 + -1.0
401,325 + -2.6
401,339 - -0.2
401,406 + CSW01_16430 0.12 +0.9
401,433 + CSW01_16430 0.17 -1.5
401,496 + CSW01_16430 0.30 -1.0
401,507 + CSW01_16430 0.32 +0.0
401,552 + CSW01_16430 0.41 +0.6
401,574 + CSW01_16430 0.45 +0.3
401,574 + CSW01_16430 0.45 -2.8
401,580 + CSW01_16430 0.46 +2.2
401,582 + CSW01_16430 0.47 +0.5
401,590 - CSW01_16430 0.48 -0.8
401,673 + CSW01_16430 0.65 -0.4
401,681 - CSW01_16430 0.66 -2.4
401,681 - CSW01_16430 0.66 +0.2
401,681 - CSW01_16430 0.66 -2.3
401,708 - CSW01_16430 0.72 -0.6
401,796 - CSW01_16430 0.89 -0.4
401,841 + +1.0
401,913 - CSW01_16435 0.84 -0.7
401,933 + -1.3
401,956 + +0.8
401,956 + -2.5
401,966 + +1.2
401,966 + -0.7
401,966 + -0.2
401,966 + +0.8
401,966 + +0.9
401,966 + -0.2
401,966 + +0.9
402,063 + CSW01_16440 0.15 -0.3
402,087 - CSW01_16440 0.21 -0.6
402,087 - CSW01_16440 0.21 +0.3
402,115 + CSW01_16440 0.28 -1.1
402,146 + CSW01_16440 0.36 -0.1
402,286 + CSW01_16440 0.71 +1.1
402,286 + CSW01_16440 0.71 +1.0
402,286 + CSW01_16440 0.71 -0.3
402,286 + CSW01_16440 0.71 +1.1
402,286 + CSW01_16440 0.71 -1.2
402,286 + CSW01_16440 0.71 -0.0
402,286 + CSW01_16440 0.71 -0.0
402,287 + CSW01_16440 0.71 -0.9
402,294 - CSW01_16440 0.73 +0.2
402,294 - CSW01_16440 0.73 -0.7
402,294 - CSW01_16440 0.73 +2.8
402,294 - CSW01_16440 0.73 -0.3
402,294 - CSW01_16440 0.73 -0.1
402,294 - CSW01_16440 0.73 -1.3
402,294 - CSW01_16440 0.73 -1.3
402,294 - CSW01_16440 0.73 +1.1
402,294 - CSW01_16440 0.73 -0.4
402,317 - CSW01_16440 0.79 -0.4
402,317 - CSW01_16440 0.79 +1.2
402,317 - CSW01_16440 0.79 +1.0
402,327 - CSW01_16440 0.81 -2.7
402,375 - -0.4
402,437 + -1.0
402,450 - -2.0
402,452 + -0.1
402,460 - -0.8
402,460 - +1.2
402,460 - +0.9
402,460 - +1.2
402,467 - +0.6
402,597 + CSW01_16445 0.21 +0.5
402,597 + CSW01_16445 0.21 -0.1
402,605 - CSW01_16445 0.22 -3.6
402,605 - CSW01_16445 0.22 +0.7
402,605 - CSW01_16445 0.22 -1.7
402,641 + CSW01_16445 0.30 -2.1
402,642 + CSW01_16445 0.30 +0.5
402,645 - CSW01_16445 0.31 -0.2
402,652 + CSW01_16445 0.32 -0.3
402,652 + CSW01_16445 0.32 +0.2
402,652 + CSW01_16445 0.32 -0.3
402,652 + CSW01_16445 0.32 -3.6
402,655 - CSW01_16445 0.33 +0.1
402,660 - CSW01_16445 0.34 +0.6
402,660 - CSW01_16445 0.34 -1.1
402,660 - CSW01_16445 0.34 +1.2
402,660 - CSW01_16445 0.34 -0.3
402,660 - CSW01_16445 0.34 +0.6
402,660 - CSW01_16445 0.34 -2.4
402,660 - CSW01_16445 0.34 -2.7
402,660 - CSW01_16445 0.34 +1.0
402,749 + CSW01_16445 0.53 +1.6
402,749 + CSW01_16445 0.53 +0.1
402,757 - CSW01_16445 0.55 +0.4
402,757 - CSW01_16445 0.55 +0.1
402,762 - CSW01_16445 0.56 +1.9
402,767 + CSW01_16445 0.57 -0.0
402,801 + CSW01_16445 0.65 -0.8
402,821 - CSW01_16445 0.69 -2.3
402,902 + CSW01_16445 0.86 -3.1

Or see this region's nucleotide sequence