Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16305 and CSW01_16310 are separated by 325 nucleotides CSW01_16310 and CSW01_16315 are separated by 269 nucleotides CSW01_16315 and CSW01_16320 are separated by 173 nucleotides CSW01_16320 and CSW01_16325 overlap by 36 nucleotides CSW01_16325 and CSW01_16330 overlap by 12 nucleotides
CSW01_16305: CSW01_16305 - hypothetical protein, at 388,366 to 388,791
_16305
CSW01_16310: CSW01_16310 - DUF3709 domain-containing protein, at 389,117 to 389,350
_16310
CSW01_16315: CSW01_16315 - hypothetical protein, at 389,620 to 389,934
_16315
CSW01_16320: CSW01_16320 - VOC family protein, at 390,108 to 390,542
_16320
CSW01_16325: CSW01_16325 - hypothetical protein, at 390,507 to 390,707
_16325
CSW01_16330: CSW01_16330 - DUF2971 domain-containing protein, at 390,696 to 391,553
_16330
Position (kb) 389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 389.138 kb on - strand at 389.162 kb on - strand, within CSW01_16310 at 389.184 kb on + strand, within CSW01_16310 at 389.463 kb on - strand at 389.478 kb on - strand at 390.175 kb on + strand, within CSW01_16320 at 390.225 kb on + strand, within CSW01_16320 at 390.225 kb on + strand, within CSW01_16320 at 390.233 kb on - strand, within CSW01_16320 at 390.277 kb on - strand, within CSW01_16320 at 390.380 kb on + strand, within CSW01_16320 at 390.398 kb on + strand, within CSW01_16320 at 390.509 kb on + strand at 390.519 kb on + strand at 390.527 kb on - strand at 390.571 kb on - strand, within CSW01_16325 at 390.751 kb on + strand at 390.752 kb on - strand at 390.759 kb on - strand at 390.760 kb on + strand at 390.760 kb on + strand at 390.760 kb on + strand at 390.760 kb on + strand at 390.761 kb on + strand at 390.761 kb on + strand at 390.765 kb on + strand at 390.768 kb on - strand at 390.768 kb on - strand at 390.769 kb on - strand at 390.770 kb on + strand at 390.770 kb on + strand at 390.778 kb on - strand at 390.778 kb on - strand at 390.789 kb on + strand, within CSW01_16330 at 390.802 kb on + strand, within CSW01_16330
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 389,138 - +0.6 389,162 - CSW01_16310 0.19 -0.8 389,184 + CSW01_16310 0.29 +1.7 389,463 - -0.1 389,478 - -2.4 390,175 + CSW01_16320 0.15 +1.9 390,225 + CSW01_16320 0.27 +0.8 390,225 + CSW01_16320 0.27 -1.4 390,233 - CSW01_16320 0.29 +1.7 390,277 - CSW01_16320 0.39 +0.1 390,380 + CSW01_16320 0.63 -0.2 390,398 + CSW01_16320 0.67 -1.2 390,509 + +0.5 390,519 + -1.0 390,527 - +0.3 390,571 - CSW01_16325 0.32 -0.1 390,751 + -0.2 390,752 - +0.3 390,759 - +0.2 390,760 + -0.1 390,760 + +1.7 390,760 + -2.5 390,760 + -1.6 390,761 + +0.5 390,761 + +0.9 390,765 + +0.7 390,768 - +0.4 390,768 - -1.1 390,769 - +1.1 390,770 + -0.1 390,770 + -0.4 390,778 - -2.9 390,778 - -3.2 390,789 + CSW01_16330 0.11 +1.5 390,802 + CSW01_16330 0.12 +2.1
Or see this region's nucleotide sequence