Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16220

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16210 and CSW01_16215 are separated by 182 nucleotidesCSW01_16215 and CSW01_16220 are separated by 280 nucleotidesCSW01_16220 and CSW01_16225 are separated by 138 nucleotidesCSW01_16225 and CSW01_16230 are separated by 304 nucleotidesCSW01_16230 and CSW01_16235 are separated by 41 nucleotides CSW01_16210: CSW01_16210 - VOC family protein, at 380,967 to 381,326 _16210 CSW01_16215: CSW01_16215 - DUF3709 domain-containing protein, at 381,509 to 381,832 _16215 CSW01_16220: CSW01_16220 - N-acetyltransferase, at 382,113 to 382,649 _16220 CSW01_16225: CSW01_16225 - hypothetical protein, at 382,788 to 383,105 _16225 CSW01_16230: CSW01_16230 - DUF645 domain-containing protein, at 383,410 to 383,592 _16230 CSW01_16235: CSW01_16235 - hypothetical protein, at 383,634 to 383,729 _16235 Position (kb) 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1at 381.470 kb on + strandat 381.612 kb on + strand, within CSW01_16215at 381.713 kb on - strand, within CSW01_16215at 382.793 kb on - strandat 382.928 kb on + strand, within CSW01_16225at 383.465 kb on - strand, within CSW01_16230at 383.492 kb on + strand, within CSW01_16230at 383.500 kb on - strand, within CSW01_16230at 383.506 kb on + strand, within CSW01_16230at 383.551 kb on - strand, within CSW01_16230

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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381,470 + +1.1
381,612 + CSW01_16215 0.32 +0.5
381,713 - CSW01_16215 0.63 +0.8
382,793 - -0.9
382,928 + CSW01_16225 0.44 -0.5
383,465 - CSW01_16230 0.30 -1.9
383,492 + CSW01_16230 0.45 -3.3
383,500 - CSW01_16230 0.49 -0.8
383,506 + CSW01_16230 0.52 -0.2
383,551 - CSW01_16230 0.77 +0.6

Or see this region's nucleotide sequence