Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15920

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15915 and CSW01_15920 overlap by 35 nucleotidesCSW01_15920 and CSW01_15925 are separated by 111 nucleotides CSW01_15915: CSW01_15915 - restriction endonuclease, at 351,890 to 352,825 _15915 CSW01_15920: CSW01_15920 - DUF3265 domain-containing protein, at 352,791 to 352,931 _15920 CSW01_15925: CSW01_15925 - hypothetical protein, at 353,043 to 354,065 _15925 Position (kb) 352 353Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 351.840 kb on - strandat 351.849 kb on + strandat 351.849 kb on + strandat 351.854 kb on + strandat 351.856 kb on + strandat 351.857 kb on - strandat 351.857 kb on - strandat 351.857 kb on - strandat 351.857 kb on - strandat 351.864 kb on - strandat 351.864 kb on - strandat 351.866 kb on + strandat 351.874 kb on - strandat 352.044 kb on - strand, within CSW01_15915at 352.050 kb on + strand, within CSW01_15915at 352.077 kb on + strand, within CSW01_15915at 352.077 kb on + strand, within CSW01_15915at 352.091 kb on - strand, within CSW01_15915at 352.177 kb on + strand, within CSW01_15915at 352.185 kb on - strand, within CSW01_15915at 352.308 kb on + strand, within CSW01_15915at 352.318 kb on + strand, within CSW01_15915at 352.321 kb on - strand, within CSW01_15915at 352.361 kb on - strand, within CSW01_15915at 352.487 kb on + strand, within CSW01_15915at 352.487 kb on + strand, within CSW01_15915at 352.496 kb on + strand, within CSW01_15915at 352.506 kb on - strand, within CSW01_15915at 352.589 kb on - strand, within CSW01_15915at 352.651 kb on + strand, within CSW01_15915at 352.664 kb on - strand, within CSW01_15915at 352.669 kb on - strand, within CSW01_15915at 352.669 kb on - strand, within CSW01_15915at 352.671 kb on + strand, within CSW01_15915at 352.679 kb on - strand, within CSW01_15915at 352.679 kb on - strand, within CSW01_15915at 352.764 kb on - strandat 352.764 kb on - strandat 352.778 kb on - strandat 352.778 kb on - strandat 352.832 kb on + strand, within CSW01_15920at 352.840 kb on - strand, within CSW01_15920at 352.890 kb on - strand, within CSW01_15920at 352.898 kb on - strand, within CSW01_15920at 352.904 kb on + strand, within CSW01_15920at 352.924 kb on + strandat 352.924 kb on + strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.997 kb on - strandat 353.048 kb on + strandat 353.056 kb on - strandat 353.216 kb on + strand, within CSW01_15925at 353.234 kb on - strand, within CSW01_15925at 353.286 kb on - strand, within CSW01_15925at 353.287 kb on - strand, within CSW01_15925at 353.324 kb on + strand, within CSW01_15925at 353.342 kb on + strand, within CSW01_15925at 353.349 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.383 kb on - strand, within CSW01_15925at 353.385 kb on + strand, within CSW01_15925at 353.396 kb on + strand, within CSW01_15925at 353.440 kb on - strand, within CSW01_15925at 353.440 kb on - strand, within CSW01_15925at 353.510 kb on + strand, within CSW01_15925at 353.609 kb on + strand, within CSW01_15925at 353.727 kb on - strand, within CSW01_15925at 353.823 kb on + strand, within CSW01_15925at 353.831 kb on + strand, within CSW01_15925at 353.839 kb on - strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.854 kb on - strand, within CSW01_15925at 353.854 kb on - strand, within CSW01_15925at 353.854 kb on - strand, within CSW01_15925at 353.894 kb on - strand, within CSW01_15925at 353.903 kb on + strand, within CSW01_15925at 353.917 kb on - strand, within CSW01_15925

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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351,840 - -0.4
351,849 + +0.6
351,849 + +1.5
351,854 + +0.4
351,856 + -0.2
351,857 - -1.1
351,857 - -0.4
351,857 - -0.4
351,857 - +1.0
351,864 - -2.8
351,864 - -2.0
351,866 + -0.0
351,874 - +0.9
352,044 - CSW01_15915 0.16 -0.2
352,050 + CSW01_15915 0.17 +1.9
352,077 + CSW01_15915 0.20 +0.1
352,077 + CSW01_15915 0.20 -1.0
352,091 - CSW01_15915 0.21 -2.0
352,177 + CSW01_15915 0.31 -2.8
352,185 - CSW01_15915 0.32 -1.2
352,308 + CSW01_15915 0.45 -2.7
352,318 + CSW01_15915 0.46 +1.0
352,321 - CSW01_15915 0.46 -0.6
352,361 - CSW01_15915 0.50 -1.0
352,487 + CSW01_15915 0.64 -0.2
352,487 + CSW01_15915 0.64 +1.2
352,496 + CSW01_15915 0.65 -0.3
352,506 - CSW01_15915 0.66 -0.4
352,589 - CSW01_15915 0.75 +0.6
352,651 + CSW01_15915 0.81 +0.2
352,664 - CSW01_15915 0.83 +0.9
352,669 - CSW01_15915 0.83 +0.5
352,669 - CSW01_15915 0.83 +1.1
352,671 + CSW01_15915 0.83 -2.1
352,679 - CSW01_15915 0.84 -3.9
352,679 - CSW01_15915 0.84 +0.5
352,764 - -1.6
352,764 - +1.9
352,778 - +0.4
352,778 - +1.1
352,832 + CSW01_15920 0.29 +0.6
352,840 - CSW01_15920 0.35 +1.0
352,890 - CSW01_15920 0.70 +1.1
352,898 - CSW01_15920 0.76 +0.1
352,904 + CSW01_15920 0.80 +0.7
352,924 + -0.7
352,924 + -0.1
352,932 - +1.4
352,932 - +1.2
352,932 - +1.1
352,932 - +0.2
352,932 - -1.3
352,997 - +1.1
353,048 + +0.6
353,056 - -2.8
353,216 + CSW01_15925 0.17 +0.4
353,234 - CSW01_15925 0.19 +1.5
353,286 - CSW01_15925 0.24 +1.0
353,287 - CSW01_15925 0.24 -1.2
353,324 + CSW01_15925 0.27 -0.1
353,342 + CSW01_15925 0.29 -0.2
353,349 + CSW01_15925 0.30 +1.1
353,375 + CSW01_15925 0.32 -1.5
353,375 + CSW01_15925 0.32 -3.8
353,375 + CSW01_15925 0.32 -2.7
353,383 - CSW01_15925 0.33 +0.5
353,385 + CSW01_15925 0.33 -1.1
353,396 + CSW01_15925 0.35 +0.0
353,440 - CSW01_15925 0.39 -1.5
353,440 - CSW01_15925 0.39 +0.3
353,510 + CSW01_15925 0.46 -1.6
353,609 + CSW01_15925 0.55 -1.3
353,727 - CSW01_15925 0.67 +1.2
353,823 + CSW01_15925 0.76 +0.6
353,831 + CSW01_15925 0.77 -0.3
353,839 - CSW01_15925 0.78 -2.0
353,846 + CSW01_15925 0.78 -1.2
353,846 + CSW01_15925 0.78 +0.0
353,846 + CSW01_15925 0.78 +1.2
353,846 + CSW01_15925 0.78 +0.7
353,846 + CSW01_15925 0.78 -0.6
353,854 - CSW01_15925 0.79 -0.7
353,854 - CSW01_15925 0.79 -2.5
353,854 - CSW01_15925 0.79 -0.5
353,894 - CSW01_15925 0.83 -2.3
353,903 + CSW01_15925 0.84 +0.9
353,917 - CSW01_15925 0.85 +0.2

Or see this region's nucleotide sequence