Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15135 and CSW01_15140 are separated by 57 nucleotides CSW01_15140 and CSW01_15145 are separated by 269 nucleotides
CSW01_15135: CSW01_15135 - TonB-dependent siderophore receptor, at 253,609 to 255,588
_15135
CSW01_15140: CSW01_15140 - DUF2218 domain-containing protein, at 255,646 to 255,966
_15140
CSW01_15145: CSW01_15145 - acetate kinase, at 256,236 to 257,429
_15145
Position (kb) 255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 254.652 kb on - strand, within CSW01_15135 at 254.677 kb on + strand, within CSW01_15135 at 254.705 kb on + strand, within CSW01_15135 at 254.863 kb on + strand, within CSW01_15135 at 254.863 kb on + strand, within CSW01_15135 at 254.923 kb on - strand, within CSW01_15135 at 254.933 kb on - strand, within CSW01_15135 at 254.980 kb on + strand, within CSW01_15135 at 255.061 kb on - strand, within CSW01_15135 at 255.061 kb on - strand, within CSW01_15135 at 255.063 kb on + strand, within CSW01_15135 at 255.063 kb on + strand, within CSW01_15135 at 255.071 kb on - strand, within CSW01_15135 at 255.114 kb on - strand, within CSW01_15135 at 255.143 kb on + strand, within CSW01_15135 at 255.151 kb on - strand, within CSW01_15135 at 255.161 kb on - strand, within CSW01_15135 at 255.200 kb on - strand, within CSW01_15135 at 255.283 kb on + strand, within CSW01_15135 at 255.343 kb on - strand, within CSW01_15135 at 255.365 kb on - strand, within CSW01_15135 at 255.365 kb on - strand, within CSW01_15135 at 255.400 kb on - strand at 255.557 kb on + strand at 255.557 kb on + strand at 255.565 kb on - strand at 255.565 kb on - strand at 255.610 kb on - strand at 255.610 kb on - strand at 255.632 kb on - strand at 255.685 kb on + strand, within CSW01_15140 at 255.693 kb on - strand, within CSW01_15140 at 255.695 kb on - strand, within CSW01_15140 at 255.806 kb on + strand, within CSW01_15140 at 255.806 kb on + strand, within CSW01_15140 at 255.806 kb on + strand, within CSW01_15140 at 255.810 kb on + strand, within CSW01_15140 at 255.814 kb on - strand, within CSW01_15140 at 255.814 kb on - strand, within CSW01_15140 at 256.006 kb on - strand at 256.006 kb on - strand at 256.205 kb on + strand at 256.213 kb on - strand at 256.223 kb on + strand at 256.246 kb on + strand at 256.324 kb on + strand at 256.325 kb on - strand at 256.325 kb on - strand at 256.332 kb on - strand at 256.332 kb on - strand at 256.352 kb on + strand at 256.446 kb on + strand, within CSW01_15145 at 256.483 kb on + strand, within CSW01_15145 at 256.484 kb on - strand, within CSW01_15145 at 256.484 kb on - strand, within CSW01_15145 at 256.484 kb on - strand, within CSW01_15145 at 256.562 kb on - strand, within CSW01_15145 at 256.676 kb on - strand, within CSW01_15145 at 256.773 kb on + strand, within CSW01_15145 at 256.875 kb on - strand, within CSW01_15145
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 254,652 - CSW01_15135 0.53 +0.6 254,677 + CSW01_15135 0.54 +0.5 254,705 + CSW01_15135 0.55 -2.5 254,863 + CSW01_15135 0.63 -1.5 254,863 + CSW01_15135 0.63 +0.4 254,923 - CSW01_15135 0.66 +1.5 254,933 - CSW01_15135 0.67 -1.1 254,980 + CSW01_15135 0.69 +1.1 255,061 - CSW01_15135 0.73 -0.8 255,061 - CSW01_15135 0.73 +2.0 255,063 + CSW01_15135 0.73 +0.1 255,063 + CSW01_15135 0.73 -0.6 255,071 - CSW01_15135 0.74 +2.3 255,114 - CSW01_15135 0.76 +1.6 255,143 + CSW01_15135 0.77 -3.7 255,151 - CSW01_15135 0.78 +1.3 255,161 - CSW01_15135 0.78 +0.3 255,200 - CSW01_15135 0.80 -3.0 255,283 + CSW01_15135 0.85 -3.3 255,343 - CSW01_15135 0.88 +1.1 255,365 - CSW01_15135 0.89 -0.3 255,365 - CSW01_15135 0.89 +0.9 255,400 - -0.9 255,557 + +0.0 255,557 + +0.7 255,565 - +2.1 255,565 - -2.3 255,610 - -0.7 255,610 - +0.6 255,632 - +0.0 255,685 + CSW01_15140 0.12 +0.5 255,693 - CSW01_15140 0.15 +0.3 255,695 - CSW01_15140 0.15 +1.5 255,806 + CSW01_15140 0.50 +0.3 255,806 + CSW01_15140 0.50 -3.4 255,806 + CSW01_15140 0.50 -3.5 255,810 + CSW01_15140 0.51 -1.4 255,814 - CSW01_15140 0.52 -1.2 255,814 - CSW01_15140 0.52 -0.9 256,006 - -0.0 256,006 - +0.8 256,205 + +0.3 256,213 - +0.3 256,223 + +2.1 256,246 + +1.3 256,324 + -1.2 256,325 - +0.8 256,325 - -0.1 256,332 - +1.0 256,332 - +0.8 256,352 + +1.4 256,446 + CSW01_15145 0.18 +1.0 256,483 + CSW01_15145 0.21 -2.6 256,484 - CSW01_15145 0.21 -2.2 256,484 - CSW01_15145 0.21 -2.7 256,484 - CSW01_15145 0.21 -3.7 256,562 - CSW01_15145 0.27 -0.8 256,676 - CSW01_15145 0.37 +0.1 256,773 + CSW01_15145 0.45 -0.8 256,875 - CSW01_15145 0.54 +0.9
Or see this region's nucleotide sequence