Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15070 and CSW01_15075 are separated by 969 nucleotides CSW01_15075 and CSW01_15080 are separated by 298 nucleotides
CSW01_15070: CSW01_15070 - thermolabile hemolysin, at 235,359 to 236,615
_15070
CSW01_15075: CSW01_15075 - hemolysin, at 237,585 to 239,810
_15075
CSW01_15080: CSW01_15080 - methyl-accepting chemotaxis protein HlyB, at 240,109 to 241,755
_15080
Position (kb) 237
238
239
240 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 236.658 kb on - strand at 236.660 kb on + strand at 236.691 kb on - strand at 236.717 kb on + strand at 236.717 kb on + strand at 236.724 kb on + strand at 236.799 kb on - strand at 236.804 kb on - strand at 236.805 kb on + strand at 236.827 kb on + strand at 236.835 kb on - strand at 236.843 kb on + strand at 236.883 kb on - strand at 237.151 kb on + strand at 237.182 kb on + strand at 237.190 kb on + strand at 237.190 kb on + strand at 237.196 kb on + strand at 237.200 kb on + strand at 237.204 kb on - strand at 237.216 kb on + strand at 237.226 kb on - strand at 237.229 kb on + strand at 237.229 kb on + strand at 237.229 kb on + strand at 237.229 kb on + strand at 237.229 kb on + strand at 237.229 kb on + strand at 237.237 kb on - strand at 237.237 kb on - strand at 237.239 kb on - strand at 237.252 kb on + strand at 237.265 kb on - strand at 237.265 kb on - strand at 237.268 kb on - strand at 237.270 kb on - strand at 237.329 kb on - strand at 237.343 kb on - strand at 237.362 kb on - strand at 237.363 kb on + strand at 237.373 kb on + strand at 237.374 kb on + strand at 237.374 kb on + strand at 237.376 kb on - strand at 237.376 kb on - strand at 237.382 kb on - strand at 237.556 kb on - strand at 237.578 kb on + strand at 237.641 kb on - strand at 237.643 kb on + strand at 237.651 kb on - strand at 237.651 kb on - strand at 237.651 kb on - strand at 237.671 kb on + strand at 237.705 kb on + strand at 237.728 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.753 kb on + strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.761 kb on - strand at 237.765 kb on + strand at 237.768 kb on + strand at 237.768 kb on + strand at 237.775 kb on + strand at 237.778 kb on + strand at 237.778 kb on + strand at 237.778 kb on + strand at 237.778 kb on + strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.786 kb on - strand at 237.833 kb on - strand, within CSW01_15075 at 237.839 kb on + strand, within CSW01_15075 at 237.856 kb on + strand, within CSW01_15075 at 237.862 kb on - strand, within CSW01_15075 at 237.864 kb on - strand, within CSW01_15075 at 237.895 kb on - strand, within CSW01_15075 at 237.895 kb on - strand, within CSW01_15075 at 237.895 kb on - strand, within CSW01_15075 at 237.897 kb on - strand, within CSW01_15075 at 237.940 kb on - strand, within CSW01_15075 at 237.945 kb on + strand, within CSW01_15075 at 237.950 kb on + strand, within CSW01_15075 at 238.009 kb on - strand, within CSW01_15075 at 238.066 kb on + strand, within CSW01_15075 at 238.098 kb on + strand, within CSW01_15075 at 238.099 kb on + strand, within CSW01_15075 at 238.107 kb on - strand, within CSW01_15075 at 238.133 kb on - strand, within CSW01_15075 at 238.186 kb on - strand, within CSW01_15075 at 238.214 kb on + strand, within CSW01_15075 at 238.214 kb on + strand, within CSW01_15075 at 238.301 kb on + strand, within CSW01_15075 at 238.360 kb on + strand, within CSW01_15075 at 238.428 kb on + strand, within CSW01_15075 at 238.543 kb on + strand, within CSW01_15075 at 238.584 kb on - strand, within CSW01_15075 at 238.594 kb on + strand, within CSW01_15075 at 238.617 kb on + strand, within CSW01_15075 at 238.625 kb on - strand, within CSW01_15075 at 238.626 kb on + strand, within CSW01_15075 at 238.772 kb on + strand, within CSW01_15075 at 238.782 kb on - strand, within CSW01_15075 at 238.830 kb on + strand, within CSW01_15075 at 238.842 kb on + strand, within CSW01_15075 at 238.893 kb on + strand, within CSW01_15075 at 238.901 kb on - strand, within CSW01_15075 at 238.925 kb on + strand, within CSW01_15075 at 238.948 kb on - strand, within CSW01_15075 at 239.005 kb on + strand, within CSW01_15075 at 239.021 kb on + strand, within CSW01_15075 at 239.044 kb on + strand, within CSW01_15075 at 239.096 kb on - strand, within CSW01_15075 at 239.177 kb on + strand, within CSW01_15075 at 239.189 kb on + strand, within CSW01_15075 at 239.194 kb on + strand, within CSW01_15075 at 239.220 kb on + strand, within CSW01_15075 at 239.228 kb on - strand, within CSW01_15075 at 239.228 kb on - strand, within CSW01_15075 at 239.228 kb on - strand, within CSW01_15075 at 239.237 kb on + strand, within CSW01_15075 at 239.241 kb on - strand, within CSW01_15075 at 239.261 kb on + strand, within CSW01_15075 at 239.268 kb on - strand, within CSW01_15075 at 239.274 kb on + strand, within CSW01_15075 at 239.280 kb on - strand, within CSW01_15075 at 239.293 kb on + strand, within CSW01_15075 at 239.298 kb on + strand, within CSW01_15075 at 239.338 kb on + strand, within CSW01_15075 at 239.402 kb on - strand, within CSW01_15075 at 239.429 kb on + strand, within CSW01_15075 at 239.466 kb on + strand, within CSW01_15075 at 239.557 kb on + strand, within CSW01_15075 at 239.677 kb on + strand at 239.750 kb on - strand at 239.838 kb on - strand at 240.021 kb on + strand at 240.021 kb on + strand at 240.029 kb on - strand at 240.187 kb on + strand at 240.204 kb on - strand at 240.228 kb on + strand at 240.295 kb on + strand, within CSW01_15080 at 240.303 kb on - strand, within CSW01_15080 at 240.441 kb on + strand, within CSW01_15080 at 240.510 kb on + strand, within CSW01_15080 at 240.515 kb on + strand, within CSW01_15080 at 240.644 kb on + strand, within CSW01_15080 at 240.652 kb on - strand, within CSW01_15080 at 240.670 kb on + strand, within CSW01_15080 at 240.685 kb on - strand, within CSW01_15080 at 240.685 kb on - strand, within CSW01_15080 at 240.743 kb on + strand, within CSW01_15080
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 236,658 - +1.4 236,660 + -4.2 236,691 - -1.2 236,717 + -0.1 236,717 + -0.8 236,724 + +1.0 236,799 - -0.5 236,804 - +1.1 236,805 + +0.7 236,827 + +0.5 236,835 - -1.1 236,843 + +1.6 236,883 - +1.4 237,151 + +0.4 237,182 + -0.3 237,190 + +1.1 237,190 + -3.4 237,196 + -0.5 237,200 + +1.3 237,204 - -0.7 237,216 + +0.5 237,226 - +0.6 237,229 + -0.1 237,229 + -0.4 237,229 + -0.7 237,229 + +0.8 237,229 + -2.6 237,229 + +1.4 237,237 - -2.1 237,237 - +0.4 237,239 - -1.0 237,252 + +1.2 237,265 - -2.7 237,265 - +1.2 237,268 - -3.3 237,270 - +0.5 237,329 - -2.4 237,343 - -1.5 237,362 - -1.1 237,363 + +0.0 237,373 + -1.9 237,374 + +0.6 237,374 + +0.5 237,376 - -2.0 237,376 - -3.4 237,382 - +1.9 237,556 - -1.0 237,578 + -1.5 237,641 - -0.3 237,643 + +0.8 237,651 - +0.2 237,651 - +0.7 237,651 - -1.4 237,671 + +0.4 237,705 + +0.2 237,728 + -0.6 237,753 + -0.4 237,753 + -1.6 237,753 + -1.3 237,753 + -0.2 237,753 + +1.0 237,753 + +1.4 237,753 + -1.6 237,753 + -3.1 237,753 + +0.8 237,753 + -0.9 237,753 + +0.9 237,753 + +0.2 237,753 + -1.6 237,761 - +1.4 237,761 - -0.2 237,761 - -0.3 237,761 - +0.6 237,761 - -2.4 237,761 - +0.7 237,761 - -0.3 237,761 - +1.2 237,761 - -0.5 237,761 - -3.1 237,761 - -1.8 237,761 - +0.9 237,761 - -0.4 237,765 + +0.8 237,768 + -0.3 237,768 + +1.0 237,775 + -0.5 237,778 + +0.7 237,778 + -3.0 237,778 + -3.2 237,778 + +0.5 237,786 - +1.2 237,786 - -1.1 237,786 - +0.6 237,786 - +0.6 237,786 - +0.5 237,786 - +0.2 237,786 - -0.0 237,786 - +1.2 237,786 - -1.3 237,786 - -0.9 237,786 - -1.8 237,786 - -1.1 237,786 - -0.3 237,833 - CSW01_15075 0.11 -3.0 237,839 + CSW01_15075 0.11 +1.0 237,856 + CSW01_15075 0.12 +0.2 237,862 - CSW01_15075 0.12 -2.8 237,864 - CSW01_15075 0.13 -0.7 237,895 - CSW01_15075 0.14 -1.4 237,895 - CSW01_15075 0.14 +0.5 237,895 - CSW01_15075 0.14 -3.1 237,897 - CSW01_15075 0.14 +0.1 237,940 - CSW01_15075 0.16 +0.9 237,945 + CSW01_15075 0.16 +0.2 237,950 + CSW01_15075 0.16 +0.4 238,009 - CSW01_15075 0.19 +0.5 238,066 + CSW01_15075 0.22 -1.8 238,098 + CSW01_15075 0.23 +1.2 238,099 + CSW01_15075 0.23 -2.3 238,107 - CSW01_15075 0.23 -1.7 238,133 - CSW01_15075 0.25 -1.1 238,186 - CSW01_15075 0.27 +1.4 238,214 + CSW01_15075 0.28 -0.7 238,214 + CSW01_15075 0.28 -2.1 238,301 + CSW01_15075 0.32 +1.3 238,360 + CSW01_15075 0.35 -0.8 238,428 + CSW01_15075 0.38 +0.2 238,543 + CSW01_15075 0.43 -1.3 238,584 - CSW01_15075 0.45 -0.4 238,594 + CSW01_15075 0.45 -0.1 238,617 + CSW01_15075 0.46 -0.8 238,625 - CSW01_15075 0.47 -0.5 238,626 + CSW01_15075 0.47 +0.7 238,772 + CSW01_15075 0.53 -1.6 238,782 - CSW01_15075 0.54 +1.3 238,830 + CSW01_15075 0.56 +0.0 238,842 + CSW01_15075 0.56 +1.1 238,893 + CSW01_15075 0.59 -0.0 238,901 - CSW01_15075 0.59 -0.2 238,925 + CSW01_15075 0.60 +1.4 238,948 - CSW01_15075 0.61 -2.3 239,005 + CSW01_15075 0.64 +0.9 239,021 + CSW01_15075 0.65 -0.0 239,044 + CSW01_15075 0.66 -0.8 239,096 - CSW01_15075 0.68 -1.7 239,177 + CSW01_15075 0.72 -4.1 239,189 + CSW01_15075 0.72 +1.8 239,194 + CSW01_15075 0.72 +1.6 239,220 + CSW01_15075 0.73 +0.3 239,228 - CSW01_15075 0.74 +0.2 239,228 - CSW01_15075 0.74 +2.2 239,228 - CSW01_15075 0.74 -0.9 239,237 + CSW01_15075 0.74 +0.2 239,241 - CSW01_15075 0.74 +1.6 239,261 + CSW01_15075 0.75 -3.7 239,268 - CSW01_15075 0.76 -2.6 239,274 + CSW01_15075 0.76 +0.4 239,280 - CSW01_15075 0.76 +1.4 239,293 + CSW01_15075 0.77 -0.1 239,298 + CSW01_15075 0.77 -1.9 239,338 + CSW01_15075 0.79 -0.9 239,402 - CSW01_15075 0.82 -2.0 239,429 + CSW01_15075 0.83 +0.3 239,466 + CSW01_15075 0.85 -2.1 239,557 + CSW01_15075 0.89 +0.8 239,677 + +1.0 239,750 - +0.5 239,838 - +0.1 240,021 + -0.8 240,021 + +1.8 240,029 - +0.6 240,187 + +0.5 240,204 - -0.4 240,228 + +0.2 240,295 + CSW01_15080 0.11 +1.2 240,303 - CSW01_15080 0.12 -0.8 240,441 + CSW01_15080 0.20 +1.5 240,510 + CSW01_15080 0.24 -0.7 240,515 + CSW01_15080 0.25 +0.4 240,644 + CSW01_15080 0.32 +0.4 240,652 - CSW01_15080 0.33 +0.4 240,670 + CSW01_15080 0.34 +0.6 240,685 - CSW01_15080 0.35 -0.7 240,685 - CSW01_15080 0.35 +0.9 240,743 + CSW01_15080 0.38 +0.4
Or see this region's nucleotide sequence