Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15055

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15050 and CSW01_15055 are separated by 394 nucleotidesCSW01_15055 and CSW01_15060 are separated by 213 nucleotidesCSW01_15060 and CSW01_15065 overlap by 10 nucleotides CSW01_15050: CSW01_15050 - Na+/H+ antiporter, at 230,460 to 232,049 _15050 CSW01_15055: CSW01_15055 - Bcr/CflA family drug resistance efflux transporter, at 232,444 to 233,688 _15055 CSW01_15060: CSW01_15060 - hypothetical protein, at 233,902 to 234,168 _15060 CSW01_15065: CSW01_15065 - GGDEF domain-containing protein, at 234,159 to 235,238 _15065 Position (kb) 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 231.554 kb on - strand, within CSW01_15050at 231.643 kb on - strand, within CSW01_15050at 231.695 kb on - strand, within CSW01_15050at 231.723 kb on - strand, within CSW01_15050at 231.775 kb on - strand, within CSW01_15050at 231.775 kb on - strand, within CSW01_15050at 231.805 kb on - strand, within CSW01_15050at 231.811 kb on + strand, within CSW01_15050at 231.811 kb on + strand, within CSW01_15050at 231.875 kb on + strand, within CSW01_15050at 231.881 kb on + strand, within CSW01_15050at 231.881 kb on + strand, within CSW01_15050at 231.881 kb on + strand, within CSW01_15050at 231.884 kb on - strand, within CSW01_15050at 231.884 kb on - strand, within CSW01_15050at 231.886 kb on + strand, within CSW01_15050at 231.889 kb on - strand, within CSW01_15050at 231.889 kb on - strand, within CSW01_15050at 231.889 kb on - strand, within CSW01_15050at 231.889 kb on - strand, within CSW01_15050at 231.894 kb on - strandat 231.948 kb on + strandat 231.948 kb on + strandat 231.948 kb on + strandat 232.116 kb on - strandat 232.127 kb on - strandat 232.146 kb on + strandat 232.146 kb on + strandat 232.167 kb on + strandat 232.232 kb on + strandat 232.232 kb on + strandat 232.248 kb on + strandat 232.256 kb on - strandat 232.256 kb on - strandat 232.256 kb on - strandat 232.256 kb on - strandat 232.256 kb on - strandat 232.263 kb on + strandat 232.271 kb on - strandat 232.271 kb on - strandat 232.271 kb on - strandat 232.309 kb on + strandat 232.337 kb on + strandat 232.343 kb on + strandat 232.345 kb on - strandat 232.347 kb on - strandat 232.351 kb on + strandat 232.351 kb on + strandat 232.442 kb on + strandat 232.484 kb on + strandat 232.486 kb on + strandat 232.492 kb on - strandat 232.518 kb on - strandat 232.523 kb on - strandat 232.538 kb on - strandat 232.570 kb on - strand, within CSW01_15055at 232.588 kb on + strand, within CSW01_15055at 232.711 kb on + strand, within CSW01_15055at 232.770 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 233.020 kb on - strand, within CSW01_15055at 233.089 kb on + strand, within CSW01_15055at 233.089 kb on + strand, within CSW01_15055at 233.089 kb on + strand, within CSW01_15055at 233.098 kb on - strand, within CSW01_15055at 233.113 kb on + strand, within CSW01_15055at 233.118 kb on + strand, within CSW01_15055at 233.139 kb on - strand, within CSW01_15055at 233.174 kb on - strand, within CSW01_15055at 233.192 kb on + strand, within CSW01_15055at 233.199 kb on - strand, within CSW01_15055at 233.200 kb on - strand, within CSW01_15055at 233.297 kb on - strand, within CSW01_15055at 233.316 kb on - strand, within CSW01_15055at 233.319 kb on + strand, within CSW01_15055at 233.319 kb on + strand, within CSW01_15055at 233.327 kb on - strand, within CSW01_15055at 233.331 kb on + strand, within CSW01_15055at 233.366 kb on + strand, within CSW01_15055at 233.536 kb on + strand, within CSW01_15055at 233.544 kb on - strand, within CSW01_15055at 233.595 kb on - strandat 233.738 kb on + strandat 233.849 kb on + strandat 233.904 kb on - strandat 233.961 kb on + strand, within CSW01_15060at 233.969 kb on - strand, within CSW01_15060at 234.062 kb on - strand, within CSW01_15060at 234.099 kb on - strand, within CSW01_15060at 234.108 kb on + strand, within CSW01_15060at 234.186 kb on - strandat 234.205 kb on + strandat 234.213 kb on - strandat 234.270 kb on + strand, within CSW01_15065at 234.289 kb on + strand, within CSW01_15065at 234.362 kb on + strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.482 kb on + strand, within CSW01_15065at 234.541 kb on + strand, within CSW01_15065at 234.581 kb on + strand, within CSW01_15065

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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231,554 - CSW01_15050 0.69 +0.4
231,643 - CSW01_15050 0.74 -0.5
231,695 - CSW01_15050 0.78 -1.7
231,723 - CSW01_15050 0.79 -0.7
231,775 - CSW01_15050 0.83 -0.5
231,775 - CSW01_15050 0.83 -0.1
231,805 - CSW01_15050 0.85 +0.0
231,811 + CSW01_15050 0.85 -0.3
231,811 + CSW01_15050 0.85 +0.7
231,875 + CSW01_15050 0.89 -3.7
231,881 + CSW01_15050 0.89 +0.1
231,881 + CSW01_15050 0.89 +0.3
231,881 + CSW01_15050 0.89 +1.6
231,884 - CSW01_15050 0.90 +1.7
231,884 - CSW01_15050 0.90 -0.2
231,886 + CSW01_15050 0.90 +0.4
231,889 - CSW01_15050 0.90 +1.2
231,889 - CSW01_15050 0.90 +0.2
231,889 - CSW01_15050 0.90 -1.9
231,889 - CSW01_15050 0.90 -1.2
231,894 - +1.0
231,948 + -0.1
231,948 + -1.8
231,948 + -0.0
232,116 - +1.0
232,127 - -1.0
232,146 + +0.7
232,146 + +0.8
232,167 + -3.7
232,232 + -1.4
232,232 + -2.5
232,248 + +1.4
232,256 - -0.9
232,256 - +0.4
232,256 - +0.3
232,256 - +1.3
232,256 - -1.9
232,263 + +1.1
232,271 - +1.2
232,271 - -0.9
232,271 - -2.1
232,309 + -1.2
232,337 + +1.5
232,343 + -0.2
232,345 - +0.0
232,347 - -0.5
232,351 + -1.5
232,351 + -0.0
232,442 + +0.8
232,484 + +1.6
232,486 + -1.3
232,492 - +1.8
232,518 - +2.5
232,523 - -0.6
232,538 - +0.9
232,570 - CSW01_15055 0.10 -0.3
232,588 + CSW01_15055 0.12 -0.3
232,711 + CSW01_15055 0.21 -0.1
232,770 + CSW01_15055 0.26 -0.4
232,927 + CSW01_15055 0.39 -0.2
232,927 + CSW01_15055 0.39 +1.9
232,927 + CSW01_15055 0.39 +0.3
232,927 + CSW01_15055 0.39 +1.0
232,927 + CSW01_15055 0.39 +1.4
232,927 + CSW01_15055 0.39 -0.1
232,927 + CSW01_15055 0.39 +0.6
232,935 - CSW01_15055 0.39 -0.4
232,935 - CSW01_15055 0.39 -0.3
232,935 - CSW01_15055 0.39 +0.9
232,935 - CSW01_15055 0.39 +0.8
232,935 - CSW01_15055 0.39 -0.2
233,020 - CSW01_15055 0.46 -2.0
233,089 + CSW01_15055 0.52 +0.7
233,089 + CSW01_15055 0.52 +0.5
233,089 + CSW01_15055 0.52 -2.4
233,098 - CSW01_15055 0.53 +2.5
233,113 + CSW01_15055 0.54 +0.5
233,118 + CSW01_15055 0.54 -2.1
233,139 - CSW01_15055 0.56 -0.9
233,174 - CSW01_15055 0.59 +1.9
233,192 + CSW01_15055 0.60 -0.0
233,199 - CSW01_15055 0.61 -0.1
233,200 - CSW01_15055 0.61 +0.8
233,297 - CSW01_15055 0.69 +2.5
233,316 - CSW01_15055 0.70 -2.9
233,319 + CSW01_15055 0.70 +2.7
233,319 + CSW01_15055 0.70 +1.6
233,327 - CSW01_15055 0.71 +0.4
233,331 + CSW01_15055 0.71 +0.1
233,366 + CSW01_15055 0.74 +1.2
233,536 + CSW01_15055 0.88 -1.0
233,544 - CSW01_15055 0.88 +0.4
233,595 - -0.5
233,738 + -1.5
233,849 + +0.4
233,904 - +0.7
233,961 + CSW01_15060 0.22 -1.3
233,969 - CSW01_15060 0.25 +0.3
234,062 - CSW01_15060 0.60 -2.9
234,099 - CSW01_15060 0.74 -0.7
234,108 + CSW01_15060 0.77 +1.1
234,186 - +1.3
234,205 + +0.3
234,213 - -0.1
234,270 + CSW01_15065 0.10 -0.2
234,289 + CSW01_15065 0.12 +1.1
234,362 + CSW01_15065 0.19 -0.6
234,370 - CSW01_15065 0.20 +0.1
234,370 - CSW01_15065 0.20 -1.5
234,370 - CSW01_15065 0.20 -1.3
234,370 - CSW01_15065 0.20 -2.6
234,482 + CSW01_15065 0.30 +1.0
234,541 + CSW01_15065 0.35 -2.0
234,581 + CSW01_15065 0.39 -0.3

Or see this region's nucleotide sequence