Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14980

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14975 and CSW01_14980 are separated by 123 nucleotidesCSW01_14980 and CSW01_14985 overlap by 8 nucleotides CSW01_14975: CSW01_14975 - DNA cytosine methyltransferase, at 214,569 to 215,720 _14975 CSW01_14980: CSW01_14980 - DUF262 domain-containing protein, at 215,844 to 217,760 _14980 CSW01_14985: CSW01_14985 - DUF3696 domain-containing protein, at 217,753 to 218,877 _14985 Position (kb) 215 216 217 218Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 215.437 kb on - strand, within CSW01_14975at 215.749 kb on + strandat 215.760 kb on - strandat 215.762 kb on - strandat 215.774 kb on + strandat 215.777 kb on + strandat 215.866 kb on - strandat 215.867 kb on - strandat 215.869 kb on + strandat 215.869 kb on + strandat 215.869 kb on + strandat 215.869 kb on + strandat 215.933 kb on + strandat 215.933 kb on + strandat 215.940 kb on - strandat 215.970 kb on + strandat 216.042 kb on - strand, within CSW01_14980at 216.056 kb on - strand, within CSW01_14980at 216.058 kb on + strand, within CSW01_14980at 216.058 kb on + strand, within CSW01_14980at 216.069 kb on + strand, within CSW01_14980at 216.071 kb on - strand, within CSW01_14980at 216.080 kb on - strand, within CSW01_14980at 216.082 kb on - strand, within CSW01_14980at 216.084 kb on + strand, within CSW01_14980at 216.084 kb on + strand, within CSW01_14980at 216.092 kb on - strand, within CSW01_14980at 216.125 kb on + strand, within CSW01_14980at 216.130 kb on - strand, within CSW01_14980at 216.130 kb on - strand, within CSW01_14980at 216.138 kb on - strand, within CSW01_14980at 216.202 kb on - strand, within CSW01_14980at 216.211 kb on + strand, within CSW01_14980at 216.383 kb on - strand, within CSW01_14980at 216.383 kb on - strand, within CSW01_14980at 216.436 kb on + strand, within CSW01_14980at 216.436 kb on + strand, within CSW01_14980at 216.436 kb on + strand, within CSW01_14980at 216.480 kb on - strand, within CSW01_14980at 216.493 kb on + strand, within CSW01_14980at 216.500 kb on - strand, within CSW01_14980at 216.502 kb on - strand, within CSW01_14980at 216.523 kb on + strand, within CSW01_14980at 216.531 kb on - strand, within CSW01_14980at 216.571 kb on + strand, within CSW01_14980at 216.571 kb on + strand, within CSW01_14980at 216.571 kb on + strand, within CSW01_14980at 216.571 kb on + strand, within CSW01_14980at 216.571 kb on + strand, within CSW01_14980at 216.579 kb on - strand, within CSW01_14980at 216.591 kb on + strand, within CSW01_14980at 216.591 kb on + strand, within CSW01_14980at 216.591 kb on + strand, within CSW01_14980at 216.596 kb on + strand, within CSW01_14980at 216.604 kb on - strand, within CSW01_14980at 216.604 kb on - strand, within CSW01_14980at 216.609 kb on - strand, within CSW01_14980at 216.615 kb on + strand, within CSW01_14980at 216.618 kb on + strand, within CSW01_14980at 216.623 kb on - strand, within CSW01_14980at 216.623 kb on - strand, within CSW01_14980at 216.625 kb on + strand, within CSW01_14980at 216.630 kb on + strand, within CSW01_14980at 216.638 kb on - strand, within CSW01_14980at 216.657 kb on + strand, within CSW01_14980at 216.704 kb on - strand, within CSW01_14980at 216.725 kb on + strand, within CSW01_14980at 216.737 kb on - strand, within CSW01_14980at 216.737 kb on - strand, within CSW01_14980at 216.742 kb on - strand, within CSW01_14980at 216.774 kb on + strand, within CSW01_14980at 216.782 kb on + strand, within CSW01_14980at 216.800 kb on - strand, within CSW01_14980at 216.807 kb on + strand, within CSW01_14980at 216.807 kb on + strand, within CSW01_14980at 216.815 kb on - strand, within CSW01_14980at 216.817 kb on + strand, within CSW01_14980at 216.824 kb on + strand, within CSW01_14980at 216.824 kb on + strand, within CSW01_14980at 216.824 kb on - strand, within CSW01_14980at 216.825 kb on - strand, within CSW01_14980at 216.832 kb on - strand, within CSW01_14980at 216.854 kb on + strand, within CSW01_14980at 216.920 kb on + strand, within CSW01_14980at 217.022 kb on + strand, within CSW01_14980at 217.076 kb on - strand, within CSW01_14980at 217.133 kb on + strand, within CSW01_14980at 217.303 kb on - strand, within CSW01_14980at 217.303 kb on - strand, within CSW01_14980at 217.303 kb on - strand, within CSW01_14980at 217.476 kb on - strand, within CSW01_14980at 217.595 kb on - strandat 217.622 kb on + strandat 217.630 kb on - strandat 217.630 kb on - strandat 217.636 kb on - strandat 217.644 kb on + strandat 217.644 kb on + strandat 217.652 kb on - strandat 217.652 kb on - strandat 217.943 kb on + strand, within CSW01_14985at 217.943 kb on - strand, within CSW01_14985at 218.019 kb on + strand, within CSW01_14985at 218.019 kb on + strand, within CSW01_14985at 218.019 kb on + strand, within CSW01_14985at 218.019 kb on + strand, within CSW01_14985at 218.019 kb on + strand, within CSW01_14985at 218.025 kb on + strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.027 kb on - strand, within CSW01_14985at 218.033 kb on - strand, within CSW01_14985at 218.033 kb on - strand, within CSW01_14985at 218.051 kb on - strand, within CSW01_14985at 218.051 kb on - strand, within CSW01_14985at 218.057 kb on + strand, within CSW01_14985at 218.057 kb on + strand, within CSW01_14985at 218.068 kb on + strand, within CSW01_14985at 218.070 kb on + strand, within CSW01_14985at 218.076 kb on - strand, within CSW01_14985at 218.078 kb on + strand, within CSW01_14985at 218.084 kb on - strand, within CSW01_14985at 218.087 kb on - strand, within CSW01_14985at 218.089 kb on + strand, within CSW01_14985at 218.097 kb on - strand, within CSW01_14985at 218.108 kb on + strand, within CSW01_14985at 218.113 kb on + strand, within CSW01_14985at 218.113 kb on + strand, within CSW01_14985at 218.113 kb on + strand, within CSW01_14985at 218.116 kb on - strand, within CSW01_14985at 218.121 kb on - strand, within CSW01_14985at 218.121 kb on - strand, within CSW01_14985at 218.121 kb on - strand, within CSW01_14985at 218.121 kb on - strand, within CSW01_14985at 218.124 kb on + strand, within CSW01_14985at 218.126 kb on - strand, within CSW01_14985at 218.131 kb on - strand, within CSW01_14985at 218.131 kb on - strand, within CSW01_14985at 218.133 kb on + strand, within CSW01_14985at 218.133 kb on - strand, within CSW01_14985at 218.157 kb on + strand, within CSW01_14985at 218.157 kb on + strand, within CSW01_14985at 218.169 kb on + strand, within CSW01_14985at 218.169 kb on + strand, within CSW01_14985at 218.169 kb on + strand, within CSW01_14985at 218.176 kb on + strand, within CSW01_14985at 218.177 kb on - strand, within CSW01_14985at 218.177 kb on - strand, within CSW01_14985at 218.177 kb on - strand, within CSW01_14985at 218.177 kb on - strand, within CSW01_14985at 218.179 kb on + strand, within CSW01_14985at 218.187 kb on - strand, within CSW01_14985at 218.189 kb on + strand, within CSW01_14985at 218.189 kb on + strand, within CSW01_14985at 218.257 kb on + strand, within CSW01_14985at 218.297 kb on + strand, within CSW01_14985at 218.308 kb on + strand, within CSW01_14985at 218.315 kb on + strand, within CSW01_14985at 218.315 kb on + strand, within CSW01_14985at 218.315 kb on + strand, within CSW01_14985at 218.316 kb on + strand, within CSW01_14985at 218.316 kb on + strand, within CSW01_14985at 218.316 kb on + strand, within CSW01_14985at 218.316 kb on - strand, within CSW01_14985at 218.318 kb on - strand, within CSW01_14985at 218.318 kb on - strand, within CSW01_14985at 218.323 kb on - strand, within CSW01_14985at 218.323 kb on - strand, within CSW01_14985at 218.323 kb on - strand, within CSW01_14985at 218.323 kb on - strand, within CSW01_14985at 218.333 kb on + strand, within CSW01_14985at 218.333 kb on + strand, within CSW01_14985at 218.333 kb on + strand, within CSW01_14985at 218.340 kb on + strand, within CSW01_14985at 218.340 kb on + strand, within CSW01_14985at 218.341 kb on - strand, within CSW01_14985at 218.341 kb on - strand, within CSW01_14985at 218.353 kb on - strand, within CSW01_14985at 218.353 kb on - strand, within CSW01_14985at 218.353 kb on - strand, within CSW01_14985at 218.355 kb on + strand, within CSW01_14985at 218.358 kb on - strand, within CSW01_14985at 218.403 kb on + strand, within CSW01_14985at 218.412 kb on - strand, within CSW01_14985at 218.427 kb on + strand, within CSW01_14985at 218.435 kb on - strand, within CSW01_14985at 218.435 kb on - strand, within CSW01_14985at 218.460 kb on + strand, within CSW01_14985at 218.460 kb on + strand, within CSW01_14985at 218.460 kb on + strand, within CSW01_14985at 218.463 kb on + strand, within CSW01_14985at 218.468 kb on - strand, within CSW01_14985at 218.472 kb on + strand, within CSW01_14985at 218.495 kb on + strand, within CSW01_14985at 218.496 kb on - strand, within CSW01_14985at 218.500 kb on + strand, within CSW01_14985at 218.506 kb on - strand, within CSW01_14985at 218.506 kb on - strand, within CSW01_14985at 218.506 kb on - strand, within CSW01_14985at 218.530 kb on + strand, within CSW01_14985at 218.595 kb on - strand, within CSW01_14985at 218.606 kb on + strand, within CSW01_14985at 218.606 kb on + strand, within CSW01_14985at 218.628 kb on + strand, within CSW01_14985at 218.635 kb on + strand, within CSW01_14985at 218.635 kb on + strand, within CSW01_14985at 218.643 kb on - strand, within CSW01_14985at 218.647 kb on + strand, within CSW01_14985at 218.660 kb on - strand, within CSW01_14985at 218.675 kb on - strand, within CSW01_14985at 218.678 kb on + strand, within CSW01_14985at 218.696 kb on + strand, within CSW01_14985at 218.696 kb on + strand, within CSW01_14985at 218.704 kb on - strand, within CSW01_14985at 218.756 kb on - strand, within CSW01_14985

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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215,437 - CSW01_14975 0.75 -1.3
215,749 + -1.1
215,760 - +0.0
215,762 - +0.1
215,774 + -2.1
215,777 + +1.5
215,866 - -0.2
215,867 - -0.2
215,869 + -0.3
215,869 + +0.6
215,869 + -0.8
215,869 + -0.1
215,933 + +3.2
215,933 + +0.2
215,940 - -3.4
215,970 + +0.9
216,042 - CSW01_14980 0.10 +0.1
216,056 - CSW01_14980 0.11 +0.0
216,058 + CSW01_14980 0.11 -3.7
216,058 + CSW01_14980 0.11 +0.9
216,069 + CSW01_14980 0.12 +1.2
216,071 - CSW01_14980 0.12 -1.3
216,080 - CSW01_14980 0.12 -1.0
216,082 - CSW01_14980 0.12 +0.4
216,084 + CSW01_14980 0.13 +1.3
216,084 + CSW01_14980 0.13 +1.9
216,092 - CSW01_14980 0.13 +0.3
216,125 + CSW01_14980 0.15 -0.5
216,130 - CSW01_14980 0.15 -0.4
216,130 - CSW01_14980 0.15 -1.5
216,138 - CSW01_14980 0.15 -2.8
216,202 - CSW01_14980 0.19 -3.7
216,211 + CSW01_14980 0.19 +1.2
216,383 - CSW01_14980 0.28 -0.2
216,383 - CSW01_14980 0.28 -1.0
216,436 + CSW01_14980 0.31 -0.2
216,436 + CSW01_14980 0.31 +0.3
216,436 + CSW01_14980 0.31 +0.2
216,480 - CSW01_14980 0.33 -0.2
216,493 + CSW01_14980 0.34 -0.7
216,500 - CSW01_14980 0.34 -2.0
216,502 - CSW01_14980 0.34 -0.8
216,523 + CSW01_14980 0.35 -0.2
216,531 - CSW01_14980 0.36 -0.1
216,571 + CSW01_14980 0.38 +1.3
216,571 + CSW01_14980 0.38 +0.7
216,571 + CSW01_14980 0.38 +1.3
216,571 + CSW01_14980 0.38 +0.4
216,571 + CSW01_14980 0.38 -3.0
216,579 - CSW01_14980 0.38 -2.3
216,591 + CSW01_14980 0.39 -3.0
216,591 + CSW01_14980 0.39 +1.4
216,591 + CSW01_14980 0.39 +0.0
216,596 + CSW01_14980 0.39 -0.8
216,604 - CSW01_14980 0.40 +0.4
216,604 - CSW01_14980 0.40 -2.1
216,609 - CSW01_14980 0.40 +0.1
216,615 + CSW01_14980 0.40 -0.3
216,618 + CSW01_14980 0.40 +0.2
216,623 - CSW01_14980 0.41 +0.3
216,623 - CSW01_14980 0.41 -1.1
216,625 + CSW01_14980 0.41 -0.1
216,630 + CSW01_14980 0.41 +0.1
216,638 - CSW01_14980 0.41 -2.1
216,657 + CSW01_14980 0.42 -3.1
216,704 - CSW01_14980 0.45 -3.6
216,725 + CSW01_14980 0.46 -1.5
216,737 - CSW01_14980 0.47 -2.4
216,737 - CSW01_14980 0.47 -0.2
216,742 - CSW01_14980 0.47 +1.3
216,774 + CSW01_14980 0.49 -2.2
216,782 + CSW01_14980 0.49 -0.2
216,800 - CSW01_14980 0.50 -1.5
216,807 + CSW01_14980 0.50 -2.9
216,807 + CSW01_14980 0.50 -1.1
216,815 - CSW01_14980 0.51 -1.2
216,817 + CSW01_14980 0.51 +0.4
216,824 + CSW01_14980 0.51 -2.0
216,824 + CSW01_14980 0.51 +0.7
216,824 - CSW01_14980 0.51 -0.4
216,825 - CSW01_14980 0.51 +0.0
216,832 - CSW01_14980 0.52 -1.6
216,854 + CSW01_14980 0.53 -2.0
216,920 + CSW01_14980 0.56 +0.2
217,022 + CSW01_14980 0.61 -0.1
217,076 - CSW01_14980 0.64 -1.9
217,133 + CSW01_14980 0.67 -1.9
217,303 - CSW01_14980 0.76 -1.8
217,303 - CSW01_14980 0.76 -2.9
217,303 - CSW01_14980 0.76 -0.2
217,476 - CSW01_14980 0.85 -4.6
217,595 - -1.3
217,622 + -1.8
217,630 - -3.3
217,630 - -2.9
217,636 - -3.5
217,644 + -0.4
217,644 + -2.1
217,652 - -1.1
217,652 - -4.0
217,943 + CSW01_14985 0.17 +1.4
217,943 - CSW01_14985 0.17 -3.2
218,019 + CSW01_14985 0.24 +0.5
218,019 + CSW01_14985 0.24 +0.4
218,019 + CSW01_14985 0.24 -2.7
218,019 + CSW01_14985 0.24 +0.2
218,019 + CSW01_14985 0.24 +0.1
218,025 + CSW01_14985 0.24 +1.0
218,027 - CSW01_14985 0.24 +0.4
218,027 - CSW01_14985 0.24 -0.8
218,027 - CSW01_14985 0.24 -0.1
218,027 - CSW01_14985 0.24 -2.6
218,027 - CSW01_14985 0.24 -1.6
218,027 - CSW01_14985 0.24 -2.1
218,027 - CSW01_14985 0.24 +1.3
218,027 - CSW01_14985 0.24 -0.9
218,027 - CSW01_14985 0.24 -0.1
218,027 - CSW01_14985 0.24 +1.8
218,027 - CSW01_14985 0.24 -0.6
218,033 - CSW01_14985 0.25 -0.4
218,033 - CSW01_14985 0.25 -1.3
218,051 - CSW01_14985 0.26 -2.9
218,051 - CSW01_14985 0.26 +1.2
218,057 + CSW01_14985 0.27 +1.1
218,057 + CSW01_14985 0.27 -2.9
218,068 + CSW01_14985 0.28 -1.7
218,070 + CSW01_14985 0.28 -2.9
218,076 - CSW01_14985 0.29 -2.8
218,078 + CSW01_14985 0.29 +2.2
218,084 - CSW01_14985 0.29 -0.8
218,087 - CSW01_14985 0.30 +0.7
218,089 + CSW01_14985 0.30 +1.0
218,097 - CSW01_14985 0.31 +0.5
218,108 + CSW01_14985 0.32 -0.7
218,113 + CSW01_14985 0.32 -2.6
218,113 + CSW01_14985 0.32 -2.1
218,113 + CSW01_14985 0.32 +2.0
218,116 - CSW01_14985 0.32 -1.1
218,121 - CSW01_14985 0.33 +1.0
218,121 - CSW01_14985 0.33 -1.8
218,121 - CSW01_14985 0.33 +1.7
218,121 - CSW01_14985 0.33 +0.6
218,124 + CSW01_14985 0.33 +0.7
218,126 - CSW01_14985 0.33 +0.1
218,131 - CSW01_14985 0.34 +0.7
218,131 - CSW01_14985 0.34 -0.7
218,133 + CSW01_14985 0.34 -0.0
218,133 - CSW01_14985 0.34 -0.6
218,157 + CSW01_14985 0.36 +0.7
218,157 + CSW01_14985 0.36 -1.2
218,169 + CSW01_14985 0.37 -0.2
218,169 + CSW01_14985 0.37 -2.2
218,169 + CSW01_14985 0.37 +0.8
218,176 + CSW01_14985 0.38 +1.6
218,177 - CSW01_14985 0.38 +0.9
218,177 - CSW01_14985 0.38 +2.2
218,177 - CSW01_14985 0.38 +0.0
218,177 - CSW01_14985 0.38 -2.6
218,179 + CSW01_14985 0.38 +0.2
218,187 - CSW01_14985 0.39 +0.4
218,189 + CSW01_14985 0.39 -0.5
218,189 + CSW01_14985 0.39 -1.6
218,257 + CSW01_14985 0.45 -0.1
218,297 + CSW01_14985 0.48 -3.7
218,308 + CSW01_14985 0.49 +0.2
218,315 + CSW01_14985 0.50 -0.4
218,315 + CSW01_14985 0.50 +0.0
218,315 + CSW01_14985 0.50 -3.8
218,316 + CSW01_14985 0.50 -0.5
218,316 + CSW01_14985 0.50 +0.5
218,316 + CSW01_14985 0.50 -0.1
218,316 - CSW01_14985 0.50 +1.3
218,318 - CSW01_14985 0.50 -3.3
218,318 - CSW01_14985 0.50 +0.3
218,323 - CSW01_14985 0.51 +0.4
218,323 - CSW01_14985 0.51 +0.0
218,323 - CSW01_14985 0.51 +2.5
218,323 - CSW01_14985 0.51 +1.1
218,333 + CSW01_14985 0.52 +0.5
218,333 + CSW01_14985 0.52 -2.7
218,333 + CSW01_14985 0.52 -1.6
218,340 + CSW01_14985 0.52 +0.3
218,340 + CSW01_14985 0.52 +0.4
218,341 - CSW01_14985 0.52 +1.1
218,341 - CSW01_14985 0.52 +1.2
218,353 - CSW01_14985 0.53 -1.4
218,353 - CSW01_14985 0.53 +0.4
218,353 - CSW01_14985 0.53 +0.3
218,355 + CSW01_14985 0.54 +0.9
218,358 - CSW01_14985 0.54 -0.4
218,403 + CSW01_14985 0.58 +2.4
218,412 - CSW01_14985 0.59 +0.9
218,427 + CSW01_14985 0.60 -2.1
218,435 - CSW01_14985 0.61 +0.1
218,435 - CSW01_14985 0.61 -2.8
218,460 + CSW01_14985 0.63 -0.1
218,460 + CSW01_14985 0.63 +0.9
218,460 + CSW01_14985 0.63 -1.9
218,463 + CSW01_14985 0.63 -0.1
218,468 - CSW01_14985 0.64 +1.4
218,472 + CSW01_14985 0.64 -1.2
218,495 + CSW01_14985 0.66 +0.3
218,496 - CSW01_14985 0.66 -2.7
218,500 + CSW01_14985 0.66 +0.7
218,506 - CSW01_14985 0.67 -2.9
218,506 - CSW01_14985 0.67 -0.1
218,506 - CSW01_14985 0.67 +0.8
218,530 + CSW01_14985 0.69 -0.4
218,595 - CSW01_14985 0.75 +2.0
218,606 + CSW01_14985 0.76 +0.2
218,606 + CSW01_14985 0.76 -0.3
218,628 + CSW01_14985 0.78 -0.3
218,635 + CSW01_14985 0.78 -0.7
218,635 + CSW01_14985 0.78 -0.6
218,643 - CSW01_14985 0.79 +1.2
218,647 + CSW01_14985 0.79 -0.8
218,660 - CSW01_14985 0.81 -2.8
218,675 - CSW01_14985 0.82 -0.8
218,678 + CSW01_14985 0.82 +0.7
218,696 + CSW01_14985 0.84 +0.4
218,696 + CSW01_14985 0.84 +0.3
218,704 - CSW01_14985 0.85 -3.3
218,756 - CSW01_14985 0.89 -3.3

Or see this region's nucleotide sequence