Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14890

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14885 and CSW01_14890 are separated by 250 nucleotidesCSW01_14890 and CSW01_14895 are separated by 171 nucleotides CSW01_14885: CSW01_14885 - NupC/NupG family nucleoside CNT transporter, at 196,598 to 197,806 _14885 CSW01_14890: CSW01_14890 - peptidase T, at 198,057 to 199,289 _14890 CSW01_14895: CSW01_14895 - mechanosensitive ion channel family protein, at 199,461 to 200,336 _14895 Position (kb) 198 199 200Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 197.079 kb on + strand, within CSW01_14885at 197.079 kb on + strand, within CSW01_14885at 197.079 kb on + strand, within CSW01_14885at 197.087 kb on - strand, within CSW01_14885at 197.087 kb on - strand, within CSW01_14885at 197.087 kb on - strand, within CSW01_14885at 197.087 kb on - strand, within CSW01_14885at 197.087 kb on - strand, within CSW01_14885at 197.095 kb on + strand, within CSW01_14885at 197.127 kb on + strand, within CSW01_14885at 197.127 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.208 kb on + strand, within CSW01_14885at 197.208 kb on + strand, within CSW01_14885at 197.208 kb on + strand, within CSW01_14885at 197.231 kb on + strand, within CSW01_14885at 197.377 kb on - strand, within CSW01_14885at 197.392 kb on + strand, within CSW01_14885at 197.392 kb on + strand, within CSW01_14885at 197.392 kb on + strand, within CSW01_14885at 197.392 kb on + strand, within CSW01_14885at 197.400 kb on - strand, within CSW01_14885at 197.468 kb on + strand, within CSW01_14885at 197.477 kb on + strand, within CSW01_14885at 197.477 kb on + strand, within CSW01_14885at 197.477 kb on + strand, within CSW01_14885at 197.652 kb on + strand, within CSW01_14885at 197.658 kb on + strand, within CSW01_14885at 197.699 kb on + strandat 197.707 kb on - strandat 197.943 kb on - strandat 198.015 kb on + strandat 198.015 kb on + strandat 198.180 kb on - strandat 198.244 kb on + strand, within CSW01_14890at 198.301 kb on + strand, within CSW01_14890at 198.301 kb on + strand, within CSW01_14890at 198.301 kb on + strand, within CSW01_14890at 198.309 kb on - strand, within CSW01_14890at 198.309 kb on - strand, within CSW01_14890at 198.361 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.438 kb on - strand, within CSW01_14890at 198.438 kb on - strand, within CSW01_14890at 198.438 kb on - strand, within CSW01_14890at 198.439 kb on - strand, within CSW01_14890at 198.459 kb on + strand, within CSW01_14890at 198.467 kb on - strand, within CSW01_14890at 198.467 kb on - strand, within CSW01_14890at 198.680 kb on + strand, within CSW01_14890at 198.715 kb on + strand, within CSW01_14890at 198.752 kb on + strand, within CSW01_14890at 198.775 kb on - strand, within CSW01_14890at 198.845 kb on + strand, within CSW01_14890at 198.901 kb on + strand, within CSW01_14890at 198.901 kb on + strand, within CSW01_14890at 198.901 kb on + strand, within CSW01_14890at 198.924 kb on - strand, within CSW01_14890at 198.979 kb on - strand, within CSW01_14890at 198.979 kb on - strand, within CSW01_14890at 199.005 kb on - strand, within CSW01_14890at 199.007 kb on + strand, within CSW01_14890at 199.007 kb on + strand, within CSW01_14890at 199.012 kb on + strand, within CSW01_14890at 199.015 kb on - strand, within CSW01_14890at 199.038 kb on - strand, within CSW01_14890at 199.039 kb on - strand, within CSW01_14890at 199.144 kb on - strand, within CSW01_14890at 199.157 kb on - strand, within CSW01_14890at 199.195 kb on + strandat 199.200 kb on + strandat 199.203 kb on - strandat 199.236 kb on + strandat 199.239 kb on - strandat 199.244 kb on - strandat 199.244 kb on - strandat 199.356 kb on + strandat 199.408 kb on + strandat 199.430 kb on + strandat 199.435 kb on + strandat 199.435 kb on + strandat 199.459 kb on - strandat 199.498 kb on + strandat 199.506 kb on - strandat 199.506 kb on - strandat 199.506 kb on - strandat 199.735 kb on + strand, within CSW01_14895at 199.823 kb on - strand, within CSW01_14895at 199.853 kb on - strand, within CSW01_14895at 199.898 kb on + strand, within CSW01_14895at 199.942 kb on - strand, within CSW01_14895at 199.987 kb on - strand, within CSW01_14895at 200.136 kb on + strand, within CSW01_14895at 200.136 kb on + strand, within CSW01_14895at 200.136 kb on + strand, within CSW01_14895at 200.144 kb on - strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.154 kb on - strand, within CSW01_14895at 200.154 kb on - strand, within CSW01_14895at 200.154 kb on - strand, within CSW01_14895at 200.154 kb on - strand, within CSW01_14895at 200.244 kb on - strand, within CSW01_14895

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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197,079 + CSW01_14885 0.40 +1.1
197,079 + CSW01_14885 0.40 -0.5
197,079 + CSW01_14885 0.40 +1.1
197,087 - CSW01_14885 0.40 -0.7
197,087 - CSW01_14885 0.40 +0.8
197,087 - CSW01_14885 0.40 +1.2
197,087 - CSW01_14885 0.40 -0.5
197,087 - CSW01_14885 0.40 +0.3
197,095 + CSW01_14885 0.41 +1.3
197,127 + CSW01_14885 0.44 +0.2
197,127 + CSW01_14885 0.44 +0.2
197,150 + CSW01_14885 0.46 +1.9
197,150 + CSW01_14885 0.46 -1.0
197,150 + CSW01_14885 0.46 +0.2
197,150 + CSW01_14885 0.46 +1.3
197,150 + CSW01_14885 0.46 -1.9
197,150 + CSW01_14885 0.46 -0.3
197,158 - CSW01_14885 0.46 +1.1
197,158 - CSW01_14885 0.46 +3.6
197,158 - CSW01_14885 0.46 -0.9
197,158 - CSW01_14885 0.46 -1.1
197,158 - CSW01_14885 0.46 +1.3
197,158 - CSW01_14885 0.46 +1.2
197,158 - CSW01_14885 0.46 -0.5
197,158 - CSW01_14885 0.46 +2.0
197,208 + CSW01_14885 0.50 +0.9
197,208 + CSW01_14885 0.50 +0.7
197,208 + CSW01_14885 0.50 -2.0
197,231 + CSW01_14885 0.52 +2.0
197,377 - CSW01_14885 0.64 -2.8
197,392 + CSW01_14885 0.66 +1.9
197,392 + CSW01_14885 0.66 -1.7
197,392 + CSW01_14885 0.66 -1.3
197,392 + CSW01_14885 0.66 -1.1
197,400 - CSW01_14885 0.66 +1.4
197,468 + CSW01_14885 0.72 -0.8
197,477 + CSW01_14885 0.73 -0.6
197,477 + CSW01_14885 0.73 +0.9
197,477 + CSW01_14885 0.73 -0.6
197,652 + CSW01_14885 0.87 -0.9
197,658 + CSW01_14885 0.88 -2.8
197,699 + -2.4
197,707 - +0.4
197,943 - +0.8
198,015 + -1.4
198,015 + +0.1
198,180 - +1.6
198,244 + CSW01_14890 0.15 -2.3
198,301 + CSW01_14890 0.20 +0.4
198,301 + CSW01_14890 0.20 -1.0
198,301 + CSW01_14890 0.20 -0.0
198,309 - CSW01_14890 0.20 -0.5
198,309 - CSW01_14890 0.20 -2.8
198,361 + CSW01_14890 0.25 -0.6
198,430 + CSW01_14890 0.30 +1.9
198,430 + CSW01_14890 0.30 -1.4
198,430 + CSW01_14890 0.30 -2.6
198,430 + CSW01_14890 0.30 +0.4
198,430 + CSW01_14890 0.30 +0.1
198,430 + CSW01_14890 0.30 +0.4
198,430 + CSW01_14890 0.30 -1.0
198,430 + CSW01_14890 0.30 +0.3
198,438 - CSW01_14890 0.31 -0.1
198,438 - CSW01_14890 0.31 +0.6
198,438 - CSW01_14890 0.31 -3.4
198,439 - CSW01_14890 0.31 +1.0
198,459 + CSW01_14890 0.33 -2.7
198,467 - CSW01_14890 0.33 -0.1
198,467 - CSW01_14890 0.33 -0.8
198,680 + CSW01_14890 0.51 -0.8
198,715 + CSW01_14890 0.53 -2.0
198,752 + CSW01_14890 0.56 -0.5
198,775 - CSW01_14890 0.58 +0.2
198,845 + CSW01_14890 0.64 -0.1
198,901 + CSW01_14890 0.68 -0.2
198,901 + CSW01_14890 0.68 +0.5
198,901 + CSW01_14890 0.68 -0.1
198,924 - CSW01_14890 0.70 -4.2
198,979 - CSW01_14890 0.75 -0.2
198,979 - CSW01_14890 0.75 -0.3
199,005 - CSW01_14890 0.77 -1.0
199,007 + CSW01_14890 0.77 +0.9
199,007 + CSW01_14890 0.77 +1.1
199,012 + CSW01_14890 0.77 +0.1
199,015 - CSW01_14890 0.78 -2.9
199,038 - CSW01_14890 0.80 +1.9
199,039 - CSW01_14890 0.80 +1.5
199,144 - CSW01_14890 0.88 +0.1
199,157 - CSW01_14890 0.89 -0.1
199,195 + -3.0
199,200 + -2.4
199,203 - -1.3
199,236 + +2.0
199,239 - +0.6
199,244 - +1.2
199,244 - +1.7
199,356 + +1.0
199,408 + +0.7
199,430 + +0.3
199,435 + -0.7
199,435 + +2.1
199,459 - +0.1
199,498 + +1.6
199,506 - -0.2
199,506 - -0.2
199,506 - +1.1
199,735 + CSW01_14895 0.31 +0.6
199,823 - CSW01_14895 0.41 +0.9
199,853 - CSW01_14895 0.45 -0.6
199,898 + CSW01_14895 0.50 -0.2
199,942 - CSW01_14895 0.55 -1.0
199,987 - CSW01_14895 0.60 +0.3
200,136 + CSW01_14895 0.77 +1.3
200,136 + CSW01_14895 0.77 -0.8
200,136 + CSW01_14895 0.77 +1.9
200,144 - CSW01_14895 0.78 +0.7
200,146 + CSW01_14895 0.78 -1.0
200,146 + CSW01_14895 0.78 -1.6
200,146 + CSW01_14895 0.78 -0.7
200,146 + CSW01_14895 0.78 -0.1
200,146 + CSW01_14895 0.78 -1.5
200,146 + CSW01_14895 0.78 +1.2
200,146 + CSW01_14895 0.78 -0.8
200,146 + CSW01_14895 0.78 +0.3
200,146 + CSW01_14895 0.78 -2.1
200,146 + CSW01_14895 0.78 -1.8
200,146 + CSW01_14895 0.78 -1.0
200,154 - CSW01_14895 0.79 +0.6
200,154 - CSW01_14895 0.79 -1.3
200,154 - CSW01_14895 0.79 +1.0
200,154 - CSW01_14895 0.79 -3.0
200,244 - CSW01_14895 0.89 +0.1

Or see this region's nucleotide sequence