Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14595

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14585 and CSW01_14590 are separated by 2 nucleotidesCSW01_14590 and CSW01_14595 are separated by 25 nucleotidesCSW01_14595 and CSW01_14600 are separated by 2 nucleotides CSW01_14585: CSW01_14585 - type VI secretion system baseplate subunit TssK, at 124,040 to 125,374 _14585 CSW01_14590: CSW01_14590 - type IV secretion protein DotU, at 125,377 to 126,150 _14590 CSW01_14595: CSW01_14595 - type VI secretion system ATPase TssH, at 126,176 to 128,785 _14595 CSW01_14600: CSW01_14600 - AAA family ATPase, at 128,788 to 130,380 _14600 Position (kb) 126 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 125.243 kb on + strandat 125.243 kb on + strandat 125.243 kb on + strandat 125.251 kb on - strandat 125.251 kb on - strandat 125.251 kb on - strandat 125.264 kb on + strandat 125.279 kb on + strandat 125.363 kb on + strandat 125.371 kb on - strandat 125.488 kb on - strand, within CSW01_14590at 125.534 kb on + strand, within CSW01_14590at 125.542 kb on - strand, within CSW01_14590at 125.544 kb on + strand, within CSW01_14590at 125.559 kb on + strand, within CSW01_14590at 125.566 kb on - strand, within CSW01_14590at 125.566 kb on - strand, within CSW01_14590at 125.566 kb on - strand, within CSW01_14590at 125.568 kb on + strand, within CSW01_14590at 125.576 kb on - strand, within CSW01_14590at 125.590 kb on - strand, within CSW01_14590at 125.600 kb on - strand, within CSW01_14590at 125.600 kb on - strand, within CSW01_14590at 125.817 kb on + strand, within CSW01_14590at 125.830 kb on + strand, within CSW01_14590at 125.830 kb on + strand, within CSW01_14590at 125.838 kb on - strand, within CSW01_14590at 125.857 kb on + strand, within CSW01_14590at 125.872 kb on + strand, within CSW01_14590at 125.880 kb on - strand, within CSW01_14590at 125.938 kb on + strand, within CSW01_14590at 125.948 kb on + strand, within CSW01_14590at 125.948 kb on + strand, within CSW01_14590at 125.956 kb on - strand, within CSW01_14590at 125.965 kb on + strand, within CSW01_14590at 125.971 kb on + strand, within CSW01_14590at 125.973 kb on - strand, within CSW01_14590at 125.979 kb on - strand, within CSW01_14590at 125.979 kb on - strand, within CSW01_14590at 125.990 kb on + strand, within CSW01_14590at 126.097 kb on + strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.145 kb on + strandat 126.181 kb on - strandat 126.188 kb on + strandat 126.258 kb on + strandat 126.274 kb on + strandat 126.324 kb on + strandat 126.402 kb on + strandat 126.403 kb on - strandat 126.403 kb on - strandat 126.508 kb on + strand, within CSW01_14595at 126.533 kb on + strand, within CSW01_14595at 126.541 kb on - strand, within CSW01_14595at 126.546 kb on - strand, within CSW01_14595at 126.558 kb on - strand, within CSW01_14595at 126.655 kb on + strand, within CSW01_14595at 126.655 kb on + strand, within CSW01_14595at 126.655 kb on + strand, within CSW01_14595at 126.655 kb on + strand, within CSW01_14595at 126.663 kb on - strand, within CSW01_14595at 126.663 kb on - strand, within CSW01_14595at 126.733 kb on + strand, within CSW01_14595at 126.753 kb on - strand, within CSW01_14595at 126.757 kb on + strand, within CSW01_14595at 126.757 kb on + strand, within CSW01_14595at 126.765 kb on - strand, within CSW01_14595at 126.765 kb on - strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.770 kb on - strand, within CSW01_14595at 126.775 kb on - strand, within CSW01_14595at 126.775 kb on - strand, within CSW01_14595at 126.775 kb on - strand, within CSW01_14595at 126.775 kb on - strand, within CSW01_14595at 126.775 kb on - strand, within CSW01_14595at 126.882 kb on + strand, within CSW01_14595at 126.892 kb on + strand, within CSW01_14595at 127.011 kb on - strand, within CSW01_14595at 127.074 kb on + strand, within CSW01_14595at 127.074 kb on + strand, within CSW01_14595at 127.074 kb on + strand, within CSW01_14595at 127.075 kb on - strand, within CSW01_14595at 127.102 kb on + strand, within CSW01_14595at 127.123 kb on + strand, within CSW01_14595at 127.123 kb on + strand, within CSW01_14595at 127.128 kb on + strand, within CSW01_14595at 127.128 kb on + strand, within CSW01_14595at 127.150 kb on + strand, within CSW01_14595at 127.150 kb on + strand, within CSW01_14595at 127.150 kb on + strand, within CSW01_14595at 127.150 kb on + strand, within CSW01_14595at 127.158 kb on - strand, within CSW01_14595at 127.232 kb on - strand, within CSW01_14595at 127.284 kb on + strand, within CSW01_14595at 127.316 kb on + strand, within CSW01_14595at 127.345 kb on - strand, within CSW01_14595at 127.369 kb on + strand, within CSW01_14595at 127.453 kb on + strand, within CSW01_14595at 127.471 kb on + strand, within CSW01_14595at 127.479 kb on - strand, within CSW01_14595at 127.479 kb on - strand, within CSW01_14595at 127.479 kb on - strand, within CSW01_14595at 127.479 kb on - strand, within CSW01_14595at 127.479 kb on - strand, within CSW01_14595at 127.551 kb on + strand, within CSW01_14595at 127.618 kb on + strand, within CSW01_14595at 127.656 kb on - strand, within CSW01_14595at 127.665 kb on + strand, within CSW01_14595at 127.673 kb on - strand, within CSW01_14595at 127.673 kb on - strand, within CSW01_14595at 127.673 kb on - strand, within CSW01_14595at 127.673 kb on - strand, within CSW01_14595at 127.673 kb on - strand, within CSW01_14595at 127.673 kb on - strand, within CSW01_14595at 127.764 kb on + strand, within CSW01_14595at 127.808 kb on + strand, within CSW01_14595at 127.808 kb on + strand, within CSW01_14595at 127.817 kb on + strand, within CSW01_14595at 127.858 kb on + strand, within CSW01_14595at 127.866 kb on + strand, within CSW01_14595at 127.874 kb on - strand, within CSW01_14595at 127.874 kb on - strand, within CSW01_14595at 128.071 kb on + strand, within CSW01_14595at 128.071 kb on + strand, within CSW01_14595at 128.079 kb on - strand, within CSW01_14595at 128.079 kb on - strand, within CSW01_14595at 128.164 kb on - strand, within CSW01_14595at 128.189 kb on + strand, within CSW01_14595at 128.202 kb on - strand, within CSW01_14595at 128.202 kb on - strand, within CSW01_14595at 128.202 kb on - strand, within CSW01_14595at 128.312 kb on + strand, within CSW01_14595at 128.312 kb on + strand, within CSW01_14595at 128.312 kb on + strand, within CSW01_14595at 128.312 kb on + strand, within CSW01_14595at 128.320 kb on - strand, within CSW01_14595at 128.320 kb on - strand, within CSW01_14595at 128.326 kb on - strand, within CSW01_14595at 128.418 kb on - strand, within CSW01_14595at 128.422 kb on + strand, within CSW01_14595at 128.430 kb on - strand, within CSW01_14595at 128.430 kb on - strand, within CSW01_14595at 128.430 kb on - strand, within CSW01_14595at 128.446 kb on + strand, within CSW01_14595at 128.446 kb on + strand, within CSW01_14595at 128.454 kb on - strand, within CSW01_14595at 128.484 kb on - strand, within CSW01_14595at 128.495 kb on - strand, within CSW01_14595at 128.495 kb on - strand, within CSW01_14595at 128.497 kb on + strand, within CSW01_14595at 128.554 kb on + strandat 128.571 kb on + strandat 128.609 kb on + strandat 128.609 kb on + strandat 128.609 kb on + strandat 128.617 kb on - strandat 128.701 kb on + strandat 128.879 kb on + strandat 128.879 kb on + strandat 128.887 kb on - strandat 128.907 kb on - strandat 129.001 kb on + strand, within CSW01_14600at 129.019 kb on - strand, within CSW01_14600at 129.114 kb on + strand, within CSW01_14600at 129.162 kb on + strand, within CSW01_14600at 129.250 kb on + strand, within CSW01_14600at 129.260 kb on - strand, within CSW01_14600at 129.260 kb on - strand, within CSW01_14600at 129.284 kb on + strand, within CSW01_14600at 129.349 kb on + strand, within CSW01_14600at 129.437 kb on - strand, within CSW01_14600at 129.447 kb on + strand, within CSW01_14600at 129.477 kb on - strand, within CSW01_14600at 129.477 kb on - strand, within CSW01_14600at 129.509 kb on + strand, within CSW01_14600at 129.533 kb on + strand, within CSW01_14600at 129.636 kb on + strand, within CSW01_14600at 129.735 kb on + strand, within CSW01_14600at 129.743 kb on - strand, within CSW01_14600at 129.766 kb on - strand, within CSW01_14600at 129.766 kb on - strand, within CSW01_14600

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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125,243 + +0.2
125,243 + -3.6
125,243 + -0.8
125,251 - -2.2
125,251 - -0.3
125,251 - -1.3
125,264 + +1.6
125,279 + +1.3
125,363 + +0.1
125,371 - -0.4
125,488 - CSW01_14590 0.14 -0.3
125,534 + CSW01_14590 0.20 +0.8
125,542 - CSW01_14590 0.21 -0.0
125,544 + CSW01_14590 0.22 +1.3
125,559 + CSW01_14590 0.24 -2.6
125,566 - CSW01_14590 0.24 +0.2
125,566 - CSW01_14590 0.24 +0.4
125,566 - CSW01_14590 0.24 -1.2
125,568 + CSW01_14590 0.25 -2.0
125,576 - CSW01_14590 0.26 +0.7
125,590 - CSW01_14590 0.28 +0.3
125,600 - CSW01_14590 0.29 +0.6
125,600 - CSW01_14590 0.29 -0.2
125,817 + CSW01_14590 0.57 -0.9
125,830 + CSW01_14590 0.59 +0.3
125,830 + CSW01_14590 0.59 +0.3
125,838 - CSW01_14590 0.60 -1.3
125,857 + CSW01_14590 0.62 -0.2
125,872 + CSW01_14590 0.64 +2.1
125,880 - CSW01_14590 0.65 +0.1
125,938 + CSW01_14590 0.72 -0.3
125,948 + CSW01_14590 0.74 -2.2
125,948 + CSW01_14590 0.74 +0.9
125,956 - CSW01_14590 0.75 -0.1
125,965 + CSW01_14590 0.76 -0.1
125,971 + CSW01_14590 0.77 -0.7
125,973 - CSW01_14590 0.77 +0.3
125,979 - CSW01_14590 0.78 -0.2
125,979 - CSW01_14590 0.78 +0.8
125,990 + CSW01_14590 0.79 +0.7
126,097 + +2.0
126,100 - +0.2
126,100 - -3.2
126,100 - +1.1
126,145 + -1.7
126,181 - -0.0
126,188 + -0.5
126,258 + +1.5
126,274 + +2.4
126,324 + -2.5
126,402 + -0.7
126,403 - -1.7
126,403 - +1.4
126,508 + CSW01_14595 0.13 +0.5
126,533 + CSW01_14595 0.14 +1.2
126,541 - CSW01_14595 0.14 +0.7
126,546 - CSW01_14595 0.14 +1.1
126,558 - CSW01_14595 0.15 +1.3
126,655 + CSW01_14595 0.18 +1.8
126,655 + CSW01_14595 0.18 -3.4
126,655 + CSW01_14595 0.18 -1.3
126,655 + CSW01_14595 0.18 +1.7
126,663 - CSW01_14595 0.19 -0.5
126,663 - CSW01_14595 0.19 -0.2
126,733 + CSW01_14595 0.21 +0.4
126,753 - CSW01_14595 0.22 +0.5
126,757 + CSW01_14595 0.22 +1.2
126,757 + CSW01_14595 0.22 -1.0
126,765 - CSW01_14595 0.23 -0.2
126,765 - CSW01_14595 0.23 -1.1
126,767 + CSW01_14595 0.23 -1.7
126,767 + CSW01_14595 0.23 +1.3
126,767 + CSW01_14595 0.23 +0.3
126,767 + CSW01_14595 0.23 +2.1
126,767 + CSW01_14595 0.23 +1.1
126,767 + CSW01_14595 0.23 +0.0
126,770 - CSW01_14595 0.23 -2.0
126,775 - CSW01_14595 0.23 +0.7
126,775 - CSW01_14595 0.23 -0.2
126,775 - CSW01_14595 0.23 +0.9
126,775 - CSW01_14595 0.23 -1.3
126,775 - CSW01_14595 0.23 -0.4
126,882 + CSW01_14595 0.27 -1.9
126,892 + CSW01_14595 0.27 +1.4
127,011 - CSW01_14595 0.32 +1.2
127,074 + CSW01_14595 0.34 +0.1
127,074 + CSW01_14595 0.34 -1.5
127,074 + CSW01_14595 0.34 +0.3
127,075 - CSW01_14595 0.34 -2.7
127,102 + CSW01_14595 0.35 +2.3
127,123 + CSW01_14595 0.36 -0.5
127,123 + CSW01_14595 0.36 -0.4
127,128 + CSW01_14595 0.36 +0.1
127,128 + CSW01_14595 0.36 +0.9
127,150 + CSW01_14595 0.37 +1.1
127,150 + CSW01_14595 0.37 -0.3
127,150 + CSW01_14595 0.37 -2.3
127,150 + CSW01_14595 0.37 -1.2
127,158 - CSW01_14595 0.38 -0.0
127,232 - CSW01_14595 0.40 -0.2
127,284 + CSW01_14595 0.42 -3.3
127,316 + CSW01_14595 0.44 -2.2
127,345 - CSW01_14595 0.45 +0.0
127,369 + CSW01_14595 0.46 +0.4
127,453 + CSW01_14595 0.49 +0.1
127,471 + CSW01_14595 0.50 -0.4
127,479 - CSW01_14595 0.50 +1.2
127,479 - CSW01_14595 0.50 +0.6
127,479 - CSW01_14595 0.50 -0.3
127,479 - CSW01_14595 0.50 -2.5
127,479 - CSW01_14595 0.50 -0.0
127,551 + CSW01_14595 0.53 -1.0
127,618 + CSW01_14595 0.55 +0.8
127,656 - CSW01_14595 0.57 -1.6
127,665 + CSW01_14595 0.57 +0.1
127,673 - CSW01_14595 0.57 +1.6
127,673 - CSW01_14595 0.57 -1.2
127,673 - CSW01_14595 0.57 +1.1
127,673 - CSW01_14595 0.57 +0.9
127,673 - CSW01_14595 0.57 +0.3
127,673 - CSW01_14595 0.57 +1.0
127,764 + CSW01_14595 0.61 -0.4
127,808 + CSW01_14595 0.63 +0.7
127,808 + CSW01_14595 0.63 +0.8
127,817 + CSW01_14595 0.63 +0.9
127,858 + CSW01_14595 0.64 +0.5
127,866 + CSW01_14595 0.65 +1.4
127,874 - CSW01_14595 0.65 +2.7
127,874 - CSW01_14595 0.65 +1.1
128,071 + CSW01_14595 0.73 +1.8
128,071 + CSW01_14595 0.73 +0.1
128,079 - CSW01_14595 0.73 +1.0
128,079 - CSW01_14595 0.73 -0.0
128,164 - CSW01_14595 0.76 -3.3
128,189 + CSW01_14595 0.77 +0.0
128,202 - CSW01_14595 0.78 -1.2
128,202 - CSW01_14595 0.78 +0.2
128,202 - CSW01_14595 0.78 -0.1
128,312 + CSW01_14595 0.82 -1.3
128,312 + CSW01_14595 0.82 +1.5
128,312 + CSW01_14595 0.82 +0.7
128,312 + CSW01_14595 0.82 +0.7
128,320 - CSW01_14595 0.82 +1.7
128,320 - CSW01_14595 0.82 +0.6
128,326 - CSW01_14595 0.82 +0.8
128,418 - CSW01_14595 0.86 +1.0
128,422 + CSW01_14595 0.86 +0.1
128,430 - CSW01_14595 0.86 +1.5
128,430 - CSW01_14595 0.86 -0.3
128,430 - CSW01_14595 0.86 -1.9
128,446 + CSW01_14595 0.87 +0.2
128,446 + CSW01_14595 0.87 -2.9
128,454 - CSW01_14595 0.87 -1.3
128,484 - CSW01_14595 0.88 -0.4
128,495 - CSW01_14595 0.89 -3.1
128,495 - CSW01_14595 0.89 -2.1
128,497 + CSW01_14595 0.89 +0.3
128,554 + +1.1
128,571 + -0.8
128,609 + -3.6
128,609 + -0.0
128,609 + -0.0
128,617 - +0.9
128,701 + -1.3
128,879 + +0.7
128,879 + -0.4
128,887 - -2.1
128,907 - +0.2
129,001 + CSW01_14600 0.13 -0.3
129,019 - CSW01_14600 0.15 -0.0
129,114 + CSW01_14600 0.20 +0.3
129,162 + CSW01_14600 0.23 +0.4
129,250 + CSW01_14600 0.29 +0.3
129,260 - CSW01_14600 0.30 +1.1
129,260 - CSW01_14600 0.30 +0.3
129,284 + CSW01_14600 0.31 +0.2
129,349 + CSW01_14600 0.35 +1.1
129,437 - CSW01_14600 0.41 -1.6
129,447 + CSW01_14600 0.41 +1.3
129,477 - CSW01_14600 0.43 +3.0
129,477 - CSW01_14600 0.43 +2.8
129,509 + CSW01_14600 0.45 -3.0
129,533 + CSW01_14600 0.47 +1.1
129,636 + CSW01_14600 0.53 +3.0
129,735 + CSW01_14600 0.59 +0.1
129,743 - CSW01_14600 0.60 +0.3
129,766 - CSW01_14600 0.61 +2.3
129,766 - CSW01_14600 0.61 +0.8

Or see this region's nucleotide sequence