Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14530 and CSW01_14535 are separated by 41 nucleotides CSW01_14535 and CSW01_14540 are separated by 771 nucleotides
CSW01_14530: CSW01_14530 - SulP family inorganic anion transporter, at 110,869 to 112,647
_14530
CSW01_14535: CSW01_14535 - RluA family pseudouridine synthase, at 112,689 to 114,368
_14535
CSW01_14540: CSW01_14540 - hypothetical protein, at 115,140 to 115,424
_14540
Position (kb)
112
113
114
115 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 111.739 kb on - strand, within CSW01_14530 at 111.797 kb on + strand, within CSW01_14530 at 111.805 kb on - strand, within CSW01_14530 at 111.963 kb on - strand, within CSW01_14530 at 111.971 kb on + strand, within CSW01_14530 at 112.050 kb on - strand, within CSW01_14530 at 112.060 kb on + strand, within CSW01_14530 at 112.060 kb on + strand, within CSW01_14530 at 112.068 kb on - strand, within CSW01_14530 at 112.068 kb on - strand, within CSW01_14530 at 112.170 kb on + strand, within CSW01_14530 at 112.259 kb on + strand, within CSW01_14530 at 112.303 kb on + strand, within CSW01_14530 at 112.366 kb on + strand, within CSW01_14530 at 112.369 kb on - strand, within CSW01_14530 at 112.369 kb on - strand, within CSW01_14530 at 112.369 kb on - strand, within CSW01_14530 at 112.439 kb on - strand, within CSW01_14530 at 112.454 kb on + strand, within CSW01_14530 at 112.474 kb on - strand at 112.555 kb on - strand at 112.555 kb on - strand at 112.573 kb on + strand at 112.588 kb on + strand at 112.714 kb on + strand at 112.714 kb on + strand at 112.714 kb on + strand at 112.714 kb on + strand at 112.714 kb on + strand at 112.714 kb on + strand at 112.714 kb on + strand at 112.722 kb on - strand at 112.722 kb on - strand at 112.722 kb on - strand at 112.722 kb on - strand at 112.729 kb on + strand at 112.729 kb on + strand at 112.729 kb on + strand at 112.729 kb on + strand at 112.729 kb on + strand at 112.729 kb on + strand at 112.737 kb on - strand at 112.737 kb on - strand at 112.737 kb on - strand at 112.876 kb on + strand, within CSW01_14535 at 112.894 kb on + strand, within CSW01_14535 at 112.939 kb on + strand, within CSW01_14535 at 113.140 kb on - strand, within CSW01_14535 at 113.213 kb on - strand, within CSW01_14535 at 113.257 kb on + strand, within CSW01_14535 at 113.265 kb on - strand, within CSW01_14535 at 113.303 kb on + strand, within CSW01_14535 at 113.304 kb on + strand, within CSW01_14535 at 113.304 kb on + strand, within CSW01_14535 at 113.312 kb on - strand, within CSW01_14535 at 113.312 kb on - strand, within CSW01_14535 at 113.312 kb on - strand, within CSW01_14535 at 113.404 kb on + strand, within CSW01_14535 at 113.412 kb on - strand, within CSW01_14535 at 113.412 kb on - strand, within CSW01_14535 at 113.452 kb on + strand, within CSW01_14535 at 113.452 kb on + strand, within CSW01_14535 at 113.452 kb on + strand, within CSW01_14535 at 113.462 kb on + strand, within CSW01_14535 at 113.529 kb on + strand, within CSW01_14535 at 113.660 kb on - strand, within CSW01_14535 at 113.678 kb on + strand, within CSW01_14535 at 113.712 kb on - strand, within CSW01_14535 at 113.740 kb on - strand, within CSW01_14535 at 113.804 kb on - strand, within CSW01_14535 at 113.804 kb on - strand, within CSW01_14535 at 113.900 kb on + strand, within CSW01_14535 at 113.900 kb on + strand, within CSW01_14535 at 113.908 kb on - strand, within CSW01_14535 at 113.935 kb on - strand, within CSW01_14535 at 113.935 kb on - strand, within CSW01_14535 at 114.090 kb on + strand, within CSW01_14535 at 114.125 kb on - strand, within CSW01_14535 at 114.133 kb on - strand, within CSW01_14535 at 114.135 kb on + strand, within CSW01_14535 at 114.144 kb on + strand, within CSW01_14535 at 114.333 kb on + strand at 114.359 kb on + strand at 114.359 kb on + strand at 114.367 kb on - strand at 114.367 kb on - strand at 114.391 kb on - strand at 114.407 kb on - strand at 114.455 kb on + strand at 114.456 kb on - strand at 114.469 kb on + strand at 114.484 kb on + strand at 114.547 kb on + strand at 114.574 kb on - strand at 114.594 kb on + strand at 114.602 kb on - strand at 114.604 kb on + strand at 114.636 kb on - strand at 114.717 kb on + strand at 114.759 kb on - strand at 114.811 kb on - strand at 115.005 kb on - strand at 115.010 kb on - strand at 115.024 kb on + strand at 115.051 kb on - strand at 115.053 kb on + strand at 115.053 kb on + strand at 115.061 kb on - strand at 115.136 kb on + strand at 115.238 kb on + strand, within CSW01_14540 at 115.246 kb on - strand, within CSW01_14540 at 115.272 kb on - strand, within CSW01_14540 at 115.289 kb on - strand, within CSW01_14540 at 115.321 kb on + strand, within CSW01_14540 at 115.368 kb on - strand, within CSW01_14540
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 111,739 - CSW01_14530 0.49 -1.3 111,797 + CSW01_14530 0.52 -0.6 111,805 - CSW01_14530 0.53 -2.2 111,963 - CSW01_14530 0.61 -1.7 111,971 + CSW01_14530 0.62 -0.7 112,050 - CSW01_14530 0.66 -2.3 112,060 + CSW01_14530 0.67 +0.9 112,060 + CSW01_14530 0.67 +1.1 112,068 - CSW01_14530 0.67 -1.8 112,068 - CSW01_14530 0.67 -1.7 112,170 + CSW01_14530 0.73 +0.4 112,259 + CSW01_14530 0.78 -2.9 112,303 + CSW01_14530 0.81 -3.5 112,366 + CSW01_14530 0.84 -0.4 112,369 - CSW01_14530 0.84 -0.7 112,369 - CSW01_14530 0.84 +0.2 112,369 - CSW01_14530 0.84 +0.7 112,439 - CSW01_14530 0.88 -0.1 112,454 + CSW01_14530 0.89 +0.3 112,474 - -3.8 112,555 - -1.0 112,555 - -0.7 112,573 + -3.7 112,588 + -0.4 112,714 + -1.6 112,714 + -0.0 112,714 + -0.5 112,714 + +0.6 112,714 + -1.0 112,714 + +0.3 112,714 + -0.0 112,722 - +0.4 112,722 - -2.9 112,722 - +1.0 112,722 - +0.5 112,729 + +0.3 112,729 + -4.1 112,729 + +0.5 112,729 + +0.2 112,729 + +0.9 112,729 + +1.1 112,737 - -3.0 112,737 - -0.1 112,737 - -0.2 112,876 + CSW01_14535 0.11 -0.8 112,894 + CSW01_14535 0.12 -1.2 112,939 + CSW01_14535 0.15 +1.4 113,140 - CSW01_14535 0.27 -0.8 113,213 - CSW01_14535 0.31 -2.5 113,257 + CSW01_14535 0.34 +0.4 113,265 - CSW01_14535 0.34 -0.7 113,303 + CSW01_14535 0.37 -0.9 113,304 + CSW01_14535 0.37 -0.1 113,304 + CSW01_14535 0.37 +1.4 113,312 - CSW01_14535 0.37 -2.7 113,312 - CSW01_14535 0.37 -1.5 113,312 - CSW01_14535 0.37 -1.7 113,404 + CSW01_14535 0.43 -0.2 113,412 - CSW01_14535 0.43 +0.3 113,412 - CSW01_14535 0.43 -1.5 113,452 + CSW01_14535 0.45 -2.4 113,452 + CSW01_14535 0.45 -1.2 113,452 + CSW01_14535 0.45 +0.1 113,462 + CSW01_14535 0.46 +1.5 113,529 + CSW01_14535 0.50 +0.8 113,660 - CSW01_14535 0.58 +0.4 113,678 + CSW01_14535 0.59 +0.5 113,712 - CSW01_14535 0.61 +0.6 113,740 - CSW01_14535 0.63 -0.0 113,804 - CSW01_14535 0.66 -2.3 113,804 - CSW01_14535 0.66 -0.4 113,900 + CSW01_14535 0.72 -0.6 113,900 + CSW01_14535 0.72 -1.5 113,908 - CSW01_14535 0.73 +1.8 113,935 - CSW01_14535 0.74 +0.7 113,935 - CSW01_14535 0.74 -2.7 114,090 + CSW01_14535 0.83 +0.0 114,125 - CSW01_14535 0.85 +1.6 114,133 - CSW01_14535 0.86 -0.1 114,135 + CSW01_14535 0.86 +0.6 114,144 + CSW01_14535 0.87 +1.4 114,333 + -1.1 114,359 + -1.5 114,359 + -2.0 114,367 - +0.6 114,367 - -0.6 114,391 - +1.4 114,407 - +0.4 114,455 + -2.1 114,456 - +0.0 114,469 + +0.0 114,484 + -0.4 114,547 + +0.8 114,574 - -2.7 114,594 + -1.1 114,602 - +0.4 114,604 + -1.0 114,636 - -3.4 114,717 + +0.9 114,759 - +0.0 114,811 - -2.6 115,005 - -2.9 115,010 - +0.7 115,024 + -0.4 115,051 - +0.8 115,053 + -0.0 115,053 + +1.0 115,061 - +1.2 115,136 + -2.9 115,238 + CSW01_14540 0.34 -2.9 115,246 - CSW01_14540 0.37 +2.1 115,272 - CSW01_14540 0.46 +0.9 115,289 - CSW01_14540 0.52 -3.6 115,321 + CSW01_14540 0.64 +0.8 115,368 - CSW01_14540 0.80 -2.1
Or see this region's nucleotide sequence