Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14445

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14435 and CSW01_14440 are separated by 41 nucleotidesCSW01_14440 and CSW01_14445 are separated by 178 nucleotidesCSW01_14445 and CSW01_14450 are separated by 100 nucleotidesCSW01_14450 and CSW01_14455 are separated by 73 nucleotidesCSW01_14455 and CSW01_14460 are separated by 165 nucleotides CSW01_14435: CSW01_14435 - MFS transporter, at 93,580 to 94,791 _14435 CSW01_14440: CSW01_14440 - redox-sensitive transcriptional activator SoxR, at 94,833 to 95,279 _14440 CSW01_14445: CSW01_14445 - MFS transporter, at 95,458 to 96,660 _14445 CSW01_14450: CSW01_14450 - hypothetical protein, at 96,761 to 97,141 _14450 CSW01_14455: CSW01_14455 - hypothetical protein, at 97,215 to 97,379 _14455 CSW01_14460: CSW01_14460 - dicarboxylate/amino acid:cation symporter, at 97,545 to 98,818 _14460 Position (kb) 95 96 97Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 94.521 kb on + strand, within CSW01_14435at 94.544 kb on - strand, within CSW01_14435at 94.665 kb on + strand, within CSW01_14435at 94.764 kb on + strandat 94.764 kb on + strandat 94.766 kb on - strandat 94.772 kb on - strandat 94.772 kb on - strandat 94.772 kb on - strandat 94.819 kb on + strandat 94.821 kb on + strandat 94.923 kb on - strand, within CSW01_14440at 95.122 kb on + strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.132 kb on + strand, within CSW01_14440at 95.155 kb on - strand, within CSW01_14440at 95.227 kb on + strand, within CSW01_14440at 95.240 kb on + strandat 95.348 kb on + strandat 95.549 kb on - strandat 95.621 kb on + strand, within CSW01_14445at 95.703 kb on + strand, within CSW01_14445at 95.711 kb on - strand, within CSW01_14445at 95.738 kb on - strand, within CSW01_14445at 95.743 kb on + strand, within CSW01_14445at 95.751 kb on - strand, within CSW01_14445at 95.784 kb on - strand, within CSW01_14445at 95.904 kb on + strand, within CSW01_14445at 95.932 kb on - strand, within CSW01_14445at 95.932 kb on - strand, within CSW01_14445at 96.017 kb on - strand, within CSW01_14445at 96.085 kb on - strand, within CSW01_14445at 96.085 kb on - strand, within CSW01_14445at 96.130 kb on + strand, within CSW01_14445at 96.130 kb on + strand, within CSW01_14445at 96.138 kb on - strand, within CSW01_14445at 96.138 kb on - strand, within CSW01_14445at 96.143 kb on - strand, within CSW01_14445at 96.145 kb on + strand, within CSW01_14445at 96.217 kb on + strand, within CSW01_14445at 96.434 kb on + strand, within CSW01_14445at 96.455 kb on + strand, within CSW01_14445at 96.463 kb on - strand, within CSW01_14445at 96.463 kb on - strand, within CSW01_14445at 96.465 kb on + strand, within CSW01_14445at 96.511 kb on - strand, within CSW01_14445at 96.551 kb on - strandat 96.562 kb on + strandat 96.569 kb on + strandat 96.597 kb on - strandat 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.945 kb on - strand, within CSW01_14450at 96.986 kb on - strand, within CSW01_14450at 97.007 kb on + strand, within CSW01_14450at 97.198 kb on + strandat 97.250 kb on - strand, within CSW01_14455at 97.250 kb on - strand, within CSW01_14455at 97.275 kb on + strand, within CSW01_14455at 97.275 kb on + strand, within CSW01_14455at 97.584 kb on - strandat 97.603 kb on + strandat 97.627 kb on - strandat 97.629 kb on + strandat 97.631 kb on + strandat 97.652 kb on - strandat 97.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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94,521 + CSW01_14435 0.78 +1.2
94,544 - CSW01_14435 0.80 -2.0
94,665 + CSW01_14435 0.90 +1.6
94,764 + -1.6
94,764 + +0.8
94,766 - +1.0
94,772 - +1.7
94,772 - -2.5
94,772 - +1.0
94,819 + +0.5
94,821 + +0.6
94,923 - CSW01_14440 0.20 +0.6
95,122 + CSW01_14440 0.65 +0.2
95,130 - CSW01_14440 0.66 +0.5
95,130 - CSW01_14440 0.66 +2.4
95,130 - CSW01_14440 0.66 -0.8
95,130 - CSW01_14440 0.66 -2.3
95,130 - CSW01_14440 0.66 -3.7
95,130 - CSW01_14440 0.66 +1.6
95,132 + CSW01_14440 0.67 +1.0
95,155 - CSW01_14440 0.72 +0.3
95,227 + CSW01_14440 0.88 -4.9
95,240 + -2.4
95,348 + -0.7
95,549 - -0.9
95,621 + CSW01_14445 0.14 -1.2
95,703 + CSW01_14445 0.20 +1.8
95,711 - CSW01_14445 0.21 -3.3
95,738 - CSW01_14445 0.23 -0.7
95,743 + CSW01_14445 0.24 -1.0
95,751 - CSW01_14445 0.24 -0.7
95,784 - CSW01_14445 0.27 -1.8
95,904 + CSW01_14445 0.37 -0.2
95,932 - CSW01_14445 0.39 +1.6
95,932 - CSW01_14445 0.39 +1.1
96,017 - CSW01_14445 0.46 +0.8
96,085 - CSW01_14445 0.52 +0.1
96,085 - CSW01_14445 0.52 -1.8
96,130 + CSW01_14445 0.56 -0.5
96,130 + CSW01_14445 0.56 -3.1
96,138 - CSW01_14445 0.57 +2.2
96,138 - CSW01_14445 0.57 -3.6
96,143 - CSW01_14445 0.57 +0.5
96,145 + CSW01_14445 0.57 +1.2
96,217 + CSW01_14445 0.63 -0.7
96,434 + CSW01_14445 0.81 -0.3
96,455 + CSW01_14445 0.83 -1.5
96,463 - CSW01_14445 0.84 -0.5
96,463 - CSW01_14445 0.84 +2.2
96,465 + CSW01_14445 0.84 -0.2
96,511 - CSW01_14445 0.88 -2.5
96,551 - -0.9
96,562 + -0.2
96,569 + +0.7
96,597 - +0.4
96,855 + CSW01_14450 0.25 +0.7
96,855 + CSW01_14450 0.25 +1.8
96,855 + CSW01_14450 0.25 -1.2
96,855 + CSW01_14450 0.25 +0.5
96,855 + CSW01_14450 0.25 +0.3
96,855 + CSW01_14450 0.25 -1.1
96,855 + CSW01_14450 0.25 +0.1
96,855 + CSW01_14450 0.25 +1.0
96,855 + CSW01_14450 0.25 +1.1
96,855 + CSW01_14450 0.25 +0.4
96,855 + CSW01_14450 0.25 +0.7
96,855 + CSW01_14450 0.25 -3.1
96,863 - CSW01_14450 0.27 -2.0
96,863 - CSW01_14450 0.27 +1.2
96,863 - CSW01_14450 0.27 -0.8
96,863 - CSW01_14450 0.27 +1.1
96,863 - CSW01_14450 0.27 +0.2
96,863 - CSW01_14450 0.27 +0.3
96,945 - CSW01_14450 0.48 -3.1
96,986 - CSW01_14450 0.59 -0.8
97,007 + CSW01_14450 0.65 -0.2
97,198 + -0.2
97,250 - CSW01_14455 0.21 -1.3
97,250 - CSW01_14455 0.21 +0.8
97,275 + CSW01_14455 0.36 -2.8
97,275 + CSW01_14455 0.36 +0.6
97,584 - +0.9
97,603 + -0.7
97,627 - -4.4
97,629 + -1.0
97,631 + -3.3
97,652 - -0.2
97,652 - +0.4

Or see this region's nucleotide sequence