Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13860

Experiment: ICP1_phage_23.5_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_23.5_MOI_rep1
2,951,907	-				-1.6
2,951,917	-				-2.3
2,951,917	-				+0.3
2,951,965	+				-1.4
2,951,988	+				+1.8
2,952,039	+				-2.4
2,952,075	+				+0.3
2,952,087	+				-3.4
2,952,130	+				+1.4
2,952,130	+				-0.5
2,952,140	+				-0.9
2,952,188	+		CSW01_13855	0.16	-2.6
2,952,188	+		CSW01_13855	0.16	-0.4
2,952,188	+		CSW01_13855	0.16	-0.5
2,952,196	+		CSW01_13855	0.18	+1.3
2,952,196	-		CSW01_13855	0.18	-3.8
2,952,196	-		CSW01_13855	0.18	+0.8
2,952,196	-		CSW01_13855	0.18	+0.2
2,952,222	+		CSW01_13855	0.22	-1.3
2,952,254	+		CSW01_13855	0.27	+1.5
2,952,262	-		CSW01_13855	0.29	-1.0
2,952,282	+		CSW01_13855	0.32	-2.4
2,952,287	+		CSW01_13855	0.33	-0.5
2,952,287	-		CSW01_13855	0.33	-3.6
2,952,290	-		CSW01_13855	0.34	-1.7
2,952,300	-		CSW01_13855	0.35	-3.2
2,952,300	-		CSW01_13855	0.35	+0.9
2,952,310	+		CSW01_13855	0.37	-0.3
2,952,323	-		CSW01_13855	0.39	+0.1
2,952,330	-		CSW01_13855	0.40	-0.2
2,952,348	-		CSW01_13855	0.43	-0.6
2,952,358	-		CSW01_13855	0.45	+1.5
2,952,358	-		CSW01_13855	0.45	-0.7
2,952,380	-		CSW01_13855	0.49	+0.1
2,952,388	-		CSW01_13855	0.50	-3.4
2,952,417	+		CSW01_13855	0.55	-4.0
2,952,425	-		CSW01_13855	0.56	+0.7
2,952,476	-		CSW01_13855	0.65	+0.1
2,952,476	-		CSW01_13855	0.65	+0.7
2,952,518	-		CSW01_13855	0.72	+1.1
2,952,587	+		CSW01_13855	0.84	+0.8
2,952,592	+		CSW01_13855	0.85	+0.1
2,952,595	-		CSW01_13855	0.85	+0.1
2,952,595	-		CSW01_13855	0.85	-3.2
2,952,664	-				-2.6
2,952,695	+				+0.6
2,952,718	-				+0.5
2,952,740	+				-2.3
2,952,740	+				+0.9
2,952,740	+				-3.1
2,952,740	+				-0.2
2,952,740	+				+0.5
2,952,748	-				-4.0
2,952,748	-				-3.4
2,952,748	-				+1.2
2,952,793	+				-2.4
2,952,801	-				+1.1
2,952,801	-				+0.8
2,952,830	+				-1.6
2,952,836	+				+0.0
2,952,838	-				+1.7
2,952,838	-				+1.5
2,952,859	+				+1.2
2,952,859	+				+0.2
2,952,872	-				+0.1
2,952,872	-				+0.8
2,952,947	-		CSW01_13860	0.12	+1.4
2,952,963	+		CSW01_13860	0.14	-0.5
2,952,977	+		CSW01_13860	0.15	-2.3
2,952,985	-		CSW01_13860	0.16	+2.1
2,953,004	-		CSW01_13860	0.18	+1.5
2,953,019	+		CSW01_13860	0.19	+0.5
2,953,027	-		CSW01_13860	0.20	-0.4
2,953,027	-		CSW01_13860	0.20	-1.3
2,953,035	+		CSW01_13860	0.21	-4.1
2,953,084	-		CSW01_13860	0.25	+0.9
2,953,103	-		CSW01_13860	0.27	+0.9
2,953,116	+		CSW01_13860	0.28	+0.6
2,953,126	+		CSW01_13860	0.29	+0.5
2,953,181	-		CSW01_13860	0.34	+0.1
2,953,181	-		CSW01_13860	0.34	+1.6
2,953,228	-		CSW01_13860	0.39	-1.6
2,953,259	+		CSW01_13860	0.42	+1.3
2,953,267	-		CSW01_13860	0.42	+0.9
2,953,274	+		CSW01_13860	0.43	+1.6
2,953,274	+		CSW01_13860	0.43	+1.0
2,953,274	+		CSW01_13860	0.43	-0.9
2,953,274	+		CSW01_13860	0.43	-3.4
2,953,280	+		CSW01_13860	0.44	-0.5
2,953,282	-		CSW01_13860	0.44	-3.4
2,953,282	-		CSW01_13860	0.44	+1.3
2,953,310	-		CSW01_13860	0.46	+1.0
2,953,372	-		CSW01_13860	0.52	+2.7
2,953,452	+		CSW01_13860	0.60	-2.4
2,953,535	+		CSW01_13860	0.68	-0.9
2,953,566	-		CSW01_13860	0.71	-0.5
2,953,612	+		CSW01_13860	0.75	-1.2
2,953,612	+		CSW01_13860	0.75	-0.4
2,953,612	+		CSW01_13860	0.75	-1.2
2,953,612	+		CSW01_13860	0.75	+0.1
2,953,620	-		CSW01_13860	0.76	-1.8
2,953,620	-		CSW01_13860	0.76	-3.1
2,953,620	-		CSW01_13860	0.76	+1.2
2,953,620	-		CSW01_13860	0.76	-1.8
2,953,620	-		CSW01_13860	0.76	-1.9
2,953,622	-		CSW01_13860	0.76	-0.5
2,953,622	-		CSW01_13860	0.76	+2.0
2,953,666	-		CSW01_13860	0.80	+2.5
2,953,701	+		CSW01_13860	0.83	+0.6
2,953,701	+		CSW01_13860	0.83	-3.1
2,953,701	+		CSW01_13860	0.83	-3.2
2,953,709	-		CSW01_13860	0.84	+1.0
2,953,723	+		CSW01_13860	0.85	+2.4
2,953,723	+		CSW01_13860	0.85	+0.0
2,953,723	+		CSW01_13860	0.85	+1.3
2,953,723	+		CSW01_13860	0.85	-3.8
2,953,731	-		CSW01_13860	0.86	-2.9
2,953,731	-		CSW01_13860	0.86	+1.9
2,953,731	-		CSW01_13860	0.86	+1.9
2,953,731	-		CSW01_13860	0.86	+2.5
2,953,736	-		CSW01_13860	0.86	+1.4
2,953,760	+		CSW01_13860	0.89	+0.9
2,953,760	+		CSW01_13860	0.89	+0.5
2,953,760	+		CSW01_13860	0.89	-0.1
2,953,760	+		CSW01_13860	0.89	+0.9
2,953,760	+		CSW01_13860	0.89	-0.1
2,953,760	+		CSW01_13860	0.89	-2.4
2,953,760	+		CSW01_13860	0.89	+0.3
2,953,760	+		CSW01_13860	0.89	+1.0
2,953,760	+		CSW01_13860	0.89	+0.8
2,953,760	+		CSW01_13860	0.89	-0.2
2,953,761	+		CSW01_13860	0.89	+0.9
2,953,766	+		CSW01_13860	0.89	+0.8
2,953,768	-		CSW01_13860	0.89	+0.1
2,953,768	-		CSW01_13860	0.89	+0.4
2,953,768	-		CSW01_13860	0.89	-0.1
2,953,768	-		CSW01_13860	0.89	+0.9
2,953,768	-		CSW01_13860	0.89	+0.4
2,953,768	-		CSW01_13860	0.89	+1.5
2,953,768	-		CSW01_13860	0.89	-0.2
2,953,768	-		CSW01_13860	0.89	-0.8
2,953,768	-		CSW01_13860	0.89	+0.6
2,953,768	-		CSW01_13860	0.89	-1.3
2,953,768	-		CSW01_13860	0.89	+0.0
2,953,768	-		CSW01_13860	0.89	+1.5
2,953,768	-		CSW01_13860	0.89	-3.3
2,953,816	+				-4.1
2,953,817	+				+1.1
2,953,835	-				-2.3
2,953,835	-				-0.1
2,953,835	-				+2.5
2,953,904	-				-0.2
2,953,906	-				+0.1
2,953,911	-				-2.1
2,953,957	+				+0.6
2,953,957	+				+1.1
2,953,957	+				-1.2
2,954,001	+				+1.3
2,954,016	-				-1.5
2,954,073	+		CSW01_13865	0.13	-0.0
2,954,078	+		CSW01_13865	0.13	-1.3
2,954,081	-		CSW01_13865	0.14	+2.1
2,954,081	-		CSW01_13865	0.14	+0.7
2,954,081	-		CSW01_13865	0.14	+3.5
2,954,083	+		CSW01_13865	0.14	+0.4
2,954,086	-		CSW01_13865	0.14	-0.2
2,954,106	+		CSW01_13865	0.15	-0.8
2,954,106	+		CSW01_13865	0.15	+0.6
2,954,106	+		CSW01_13865	0.15	-0.2
2,954,106	+		CSW01_13865	0.15	+1.1
2,954,106	+		CSW01_13865	0.15	-0.2
2,954,125	+		CSW01_13865	0.17	-3.8
2,954,133	-		CSW01_13865	0.17	+1.1
2,954,152	-		CSW01_13865	0.19	+0.5
2,954,180	+		CSW01_13865	0.21	-0.2
2,954,212	+		CSW01_13865	0.23	-2.9
2,954,232	-		CSW01_13865	0.24	+2.2
2,954,253	+		CSW01_13865	0.26	+1.0
2,954,253	+		CSW01_13865	0.26	-2.9
2,954,261	-		CSW01_13865	0.27	+0.4
2,954,261	-		CSW01_13865	0.27	-1.8
2,954,261	-		CSW01_13865	0.27	-2.9
2,954,271	-		CSW01_13865	0.27	-0.8
2,954,271	-		CSW01_13865	0.27	-1.9
2,954,432	-		CSW01_13865	0.39	-0.4
2,954,439	+		CSW01_13865	0.39	-2.3
2,954,442	-		CSW01_13865	0.39	+1.5
2,954,447	-		CSW01_13865	0.40	-0.4
2,954,447	-		CSW01_13865	0.40	-3.5
2,954,447	-		CSW01_13865	0.40	-2.2
2,954,471	+		CSW01_13865	0.42	-1.9
2,954,547	-		CSW01_13865	0.47	+1.2
2,954,650	-		CSW01_13865	0.54	+1.1
2,954,832	-		CSW01_13865	0.67	-1.7
2,954,843	+		CSW01_13865	0.68	-0.7