Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13345

Experiment: ICP1_phage_23.5_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_23.5_MOI_rep1
2,839,746	-				+1.1
2,839,750	+				-0.0
2,839,758	-				-0.2
2,839,864	-		CSW01_13340	0.18	+1.0
2,839,868	+		CSW01_13340	0.18	-1.9
2,839,868	+		CSW01_13340	0.18	+0.2
2,839,876	-		CSW01_13340	0.19	+1.6
2,839,886	+		CSW01_13340	0.20	-0.3
2,839,894	-		CSW01_13340	0.21	-1.0
2,839,919	-		CSW01_13340	0.24	+1.8
2,840,002	+		CSW01_13340	0.33	-0.2
2,840,010	-		CSW01_13340	0.34	+1.2
2,840,029	-		CSW01_13340	0.36	-0.4
2,840,044	+		CSW01_13340	0.38	+1.2
2,840,092	+		CSW01_13340	0.43	+0.2
2,840,100	-		CSW01_13340	0.44	+0.1
2,840,102	+		CSW01_13340	0.44	+0.4
2,840,102	+		CSW01_13340	0.44	-1.6
2,840,110	-		CSW01_13340	0.45	-0.8
2,840,110	-		CSW01_13340	0.45	-2.3
2,840,110	-		CSW01_13340	0.45	-1.2
2,840,112	+		CSW01_13340	0.45	+1.4
2,840,112	+		CSW01_13340	0.45	+0.4
2,840,112	+		CSW01_13340	0.45	-0.5
2,840,112	+		CSW01_13340	0.45	-1.0
2,840,120	-		CSW01_13340	0.46	+0.0
2,840,120	-		CSW01_13340	0.46	+0.6
2,840,120	-		CSW01_13340	0.46	-3.9
2,840,148	-		CSW01_13340	0.49	-0.2
2,840,178	+		CSW01_13340	0.53	-2.5
2,840,187	+		CSW01_13340	0.54	+0.3
2,840,213	+		CSW01_13340	0.57	+0.6
2,840,234	-		CSW01_13340	0.59	-1.1
2,840,237	+		CSW01_13340	0.59	-2.4
2,840,293	+		CSW01_13340	0.66	+1.3
2,840,300	+		CSW01_13340	0.66	+1.6
2,840,305	+		CSW01_13340	0.67	+1.2
2,840,308	-		CSW01_13340	0.67	+0.5
2,840,310	+		CSW01_13340	0.68	+0.6
2,840,313	-		CSW01_13340	0.68	+1.3
2,840,330	+		CSW01_13340	0.70	+0.9
2,840,342	+		CSW01_13340	0.71	+1.2
2,840,342	+		CSW01_13340	0.71	-2.5
2,840,386	+		CSW01_13340	0.76	-2.3
2,840,445	+		CSW01_13340	0.83	+0.5
2,840,602	-				-0.5
2,840,699	-				+0.8
2,840,804	-		CSW01_13345	0.10	-2.6
2,840,831	+		CSW01_13345	0.14	-0.3
2,840,838	+		CSW01_13345	0.15	-1.3
2,840,904	-		CSW01_13345	0.24	+1.0
2,841,015	+		CSW01_13345	0.39	+0.6
2,841,121	+		CSW01_13345	0.53	+0.0
2,841,131	+		CSW01_13345	0.54	+0.9
2,841,131	+		CSW01_13345	0.54	-2.6
2,841,134	-		CSW01_13345	0.55	-0.2
2,841,139	-		CSW01_13345	0.55	+0.3
2,841,139	-		CSW01_13345	0.55	+1.0
2,841,188	+		CSW01_13345	0.62	-0.5
2,841,239	-		CSW01_13345	0.69	-0.9
2,841,243	+		CSW01_13345	0.69	+0.5
2,841,251	-		CSW01_13345	0.70	-0.2
2,841,251	-		CSW01_13345	0.70	+1.5
2,841,272	+		CSW01_13345	0.73	+2.2
2,841,278	-		CSW01_13345	0.74	+1.2
2,841,306	+		CSW01_13345	0.78	-1.9
2,841,311	+		CSW01_13345	0.78	-2.2
2,841,319	-		CSW01_13345	0.80	-2.0
2,841,321	+		CSW01_13345	0.80	+0.4
2,841,329	-		CSW01_13345	0.81	+2.1
2,841,364	+		CSW01_13345	0.86	-2.2
2,841,381	+		CSW01_13345	0.88	+0.4
2,841,389	-		CSW01_13345	0.89	+0.9
2,841,420	+				+1.3
2,841,426	-				-0.7
2,841,428	-				-1.7
2,841,445	+				-1.8
2,841,445	+				-1.1
2,841,445	+				-1.0
2,841,453	-				+1.5
2,841,465	-				-1.9
2,841,465	-				+0.5
2,841,493	+				+3.0
2,841,493	+				+1.3
2,841,501	-				+0.7
2,841,501	-				-0.2
2,841,501	-				+0.3
2,841,564	-				-0.7
2,841,585	+				-3.3
2,841,587	+				-1.4
2,841,592	-				-2.8
2,841,624	-				+0.7
2,841,677	-				+1.6
2,841,681	+				-0.3
2,841,684	-				+1.5
2,841,689	-		CSW01_13350	0.10	+1.2
2,841,698	-		CSW01_13350	0.11	-3.9
2,841,698	-		CSW01_13350	0.11	-0.1
2,841,728	-		CSW01_13350	0.13	-0.7
2,841,728	-		CSW01_13350	0.13	-1.6
2,841,747	+		CSW01_13350	0.14	+0.9
2,841,747	+		CSW01_13350	0.14	+0.9
2,841,747	+		CSW01_13350	0.14	-3.6
2,841,747	+		CSW01_13350	0.14	-3.0
2,841,755	-		CSW01_13350	0.15	+2.0
2,841,755	-		CSW01_13350	0.15	-2.3
2,841,755	-		CSW01_13350	0.15	+0.9
2,841,755	-		CSW01_13350	0.15	-0.8
2,841,877	+		CSW01_13350	0.23	-0.1
2,841,879	-		CSW01_13350	0.23	-1.0
2,841,885	-		CSW01_13350	0.24	-0.4
2,841,941	-		CSW01_13350	0.27	+1.4
2,841,959	-		CSW01_13350	0.29	+0.7
2,841,980	+		CSW01_13350	0.30	+0.1
2,842,082	+		CSW01_13350	0.37	-2.3
2,842,092	+		CSW01_13350	0.38	-3.6
2,842,092	+		CSW01_13350	0.38	+1.7
2,842,092	+		CSW01_13350	0.38	-5.0
2,842,092	+		CSW01_13350	0.38	+1.4
2,842,092	+		CSW01_13350	0.38	+0.4
2,842,092	+		CSW01_13350	0.38	-1.0
2,842,092	+		CSW01_13350	0.38	+1.7
2,842,092	+		CSW01_13350	0.38	-3.5
2,842,092	+		CSW01_13350	0.38	+1.0
2,842,092	+		CSW01_13350	0.38	-0.6
2,842,092	+		CSW01_13350	0.38	-2.4
2,842,092	+		CSW01_13350	0.38	+0.5
2,842,092	+		CSW01_13350	0.38	+0.6
2,842,092	+		CSW01_13350	0.38	+0.7
2,842,092	+		CSW01_13350	0.38	+2.7
2,842,092	+		CSW01_13350	0.38	+1.3
2,842,092	+		CSW01_13350	0.38	-1.6
2,842,092	+		CSW01_13350	0.38	-3.1
2,842,092	+		CSW01_13350	0.38	-1.9
2,842,092	+		CSW01_13350	0.38	-1.0
2,842,092	+		CSW01_13350	0.38	-1.8
2,842,092	+		CSW01_13350	0.38	+1.4
2,842,100	-		CSW01_13350	0.38	+0.0
2,842,100	-		CSW01_13350	0.38	+0.4
2,842,100	-		CSW01_13350	0.38	-0.8
2,842,100	-		CSW01_13350	0.38	+1.1
2,842,100	-		CSW01_13350	0.38	+0.6
2,842,100	-		CSW01_13350	0.38	-1.1
2,842,100	-		CSW01_13350	0.38	+0.4
2,842,100	-		CSW01_13350	0.38	-0.2
2,842,100	-		CSW01_13350	0.38	-2.2
2,842,100	-		CSW01_13350	0.38	-1.0
2,842,100	-		CSW01_13350	0.38	-1.2
2,842,100	-		CSW01_13350	0.38	+1.0
2,842,100	-		CSW01_13350	0.38	-3.6
2,842,100	-		CSW01_13350	0.38	-1.9
2,842,100	-		CSW01_13350	0.38	-0.7
2,842,100	-		CSW01_13350	0.38	+0.5
2,842,139	+		CSW01_13350	0.41	-4.3
2,842,147	-		CSW01_13350	0.42	-1.1
2,842,159	+		CSW01_13350	0.42	-1.5
2,842,167	-		CSW01_13350	0.43	-3.4
2,842,219	+		CSW01_13350	0.47	+0.4
2,842,245	-		CSW01_13350	0.48	-2.6
2,842,245	-		CSW01_13350	0.48	-1.7
2,842,329	+		CSW01_13350	0.54	-3.4
2,842,376	+		CSW01_13350	0.57	+0.3
2,842,381	+		CSW01_13350	0.58	-0.2
2,842,384	-		CSW01_13350	0.58	-1.8
2,842,385	-		CSW01_13350	0.58	+1.0
2,842,389	-		CSW01_13350	0.58	-1.3
2,842,400	-		CSW01_13350	0.59	-0.3
2,842,417	+		CSW01_13350	0.60	-4.3
2,842,425	-		CSW01_13350	0.61	+1.1
2,842,425	-		CSW01_13350	0.61	+1.2
2,842,425	-		CSW01_13350	0.61	-2.4
2,842,425	-		CSW01_13350	0.61	-1.7
2,842,429	+		CSW01_13350	0.61	-4.2
2,842,447	-		CSW01_13350	0.62	+0.6
2,842,454	-		CSW01_13350	0.63	-1.3