Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13195

Experiment: ICP1_phage_23.5_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_23.5_MOI_rep1
2,805,337	+				+0.3
2,805,337	+				-0.5
2,805,345	-				+0.6
2,805,356	-				+0.7
2,805,358	-				-0.2
2,805,406	-		CSW01_13185	0.11	-0.7
2,805,434	-		CSW01_13185	0.16	+0.1
2,805,476	-		CSW01_13185	0.22	-1.4
2,805,497	-		CSW01_13185	0.26	-0.3
2,805,631	+		CSW01_13185	0.48	-1.3
2,805,631	+		CSW01_13185	0.48	+1.6
2,805,671	+		CSW01_13185	0.55	+1.1
2,805,681	+		CSW01_13185	0.56	-2.9
2,805,681	+		CSW01_13185	0.56	-2.3
2,805,689	+		CSW01_13185	0.58	-1.0
2,805,689	+		CSW01_13185	0.58	+1.3
2,805,689	+		CSW01_13185	0.58	+0.4
2,805,697	-		CSW01_13185	0.59	+0.8
2,805,697	-		CSW01_13185	0.59	-2.6
2,805,697	-		CSW01_13185	0.59	+1.4
2,805,816	-		CSW01_13185	0.79	+0.4
2,805,879	+		CSW01_13185	0.89	-1.2
2,805,950	+				-3.3
2,805,958	-				-3.6
2,805,958	-				+0.7
2,806,087	+		CSW01_13190	0.25	+1.1
2,806,101	+		CSW01_13190	0.32	+0.7
2,806,103	-		CSW01_13190	0.33	+0.8
2,806,111	+		CSW01_13190	0.37	+1.9
2,806,134	+		CSW01_13190	0.48	-2.6
2,806,134	+		CSW01_13190	0.48	+0.9
2,806,134	+		CSW01_13190	0.48	+2.5
2,806,142	-		CSW01_13190	0.52	+0.3
2,806,144	+		CSW01_13190	0.53	+1.2
2,806,144	+		CSW01_13190	0.53	-2.2
2,806,144	+		CSW01_13190	0.53	-0.5
2,806,144	+		CSW01_13190	0.53	+0.5
2,806,144	+		CSW01_13190	0.53	+0.6
2,806,144	+		CSW01_13190	0.53	-1.8
2,806,144	+		CSW01_13190	0.53	-3.2
2,806,149	+		CSW01_13190	0.56	-3.5
2,806,152	-		CSW01_13190	0.57	+0.4
2,806,152	-		CSW01_13190	0.57	+0.9
2,806,154	+		CSW01_13190	0.58	+0.6
2,806,157	-		CSW01_13190	0.60	-2.2
2,806,164	-		CSW01_13190	0.63	-1.1
2,806,167	-		CSW01_13190	0.65	-1.4
2,806,168	+		CSW01_13190	0.65	-0.2
2,806,185	+		CSW01_13190	0.74	-3.1
2,806,185	+		CSW01_13190	0.74	-0.3
2,806,193	-		CSW01_13190	0.78	-3.1
2,806,193	-		CSW01_13190	0.78	-0.8
2,806,193	-		CSW01_13190	0.78	+1.0
2,806,202	-		CSW01_13190	0.82	-3.9
2,806,252	-				-2.1
2,806,252	-				-0.8
2,806,287	-				+0.1
2,806,498	-		CSW01_13195	0.14	+0.4
2,806,527	-		CSW01_13195	0.16	-1.1
2,806,542	+		CSW01_13195	0.16	-1.1
2,806,542	+		CSW01_13195	0.16	-0.3
2,806,614	-		CSW01_13195	0.20	+2.9
2,806,619	-		CSW01_13195	0.21	+0.7
2,806,621	-		CSW01_13195	0.21	-0.2
2,806,624	+		CSW01_13195	0.21	+0.2
2,806,652	+		CSW01_13195	0.22	+0.5
2,806,653	+		CSW01_13195	0.23	+1.4
2,806,672	-		CSW01_13195	0.24	+1.1
2,806,679	+		CSW01_13195	0.24	+1.0
2,806,791	+		CSW01_13195	0.30	+2.1
2,806,791	+		CSW01_13195	0.30	-0.4
2,806,799	-		CSW01_13195	0.31	+0.2
2,806,799	-		CSW01_13195	0.31	-2.3
2,806,931	+		CSW01_13195	0.38	-0.8
2,806,942	+		CSW01_13195	0.39	-3.1
2,806,959	-		CSW01_13195	0.39	-0.2
2,806,967	-		CSW01_13195	0.40	-0.3
2,807,105	-		CSW01_13195	0.48	-1.0
2,807,133	-		CSW01_13195	0.49	-3.6
2,807,134	-		CSW01_13195	0.49	-0.3
2,807,158	+		CSW01_13195	0.51	+0.1
2,807,162	-		CSW01_13195	0.51	+0.8
2,807,178	+		CSW01_13195	0.52	-2.9
2,807,178	+		CSW01_13195	0.52	+0.4
2,807,178	+		CSW01_13195	0.52	-0.1
2,807,186	-		CSW01_13195	0.52	+0.8
2,807,186	-		CSW01_13195	0.52	-2.7
2,807,186	-		CSW01_13195	0.52	+0.1
2,807,186	-		CSW01_13195	0.52	-3.2
2,807,186	-		CSW01_13195	0.52	+0.4
2,807,208	+		CSW01_13195	0.53	+1.6
2,807,240	+		CSW01_13195	0.55	-4.5
2,807,330	-		CSW01_13195	0.60	-1.6
2,807,340	+		CSW01_13195	0.61	+0.7
2,807,349	-		CSW01_13195	0.61	-0.5
2,807,349	-		CSW01_13195	0.61	+0.1
2,807,381	+		CSW01_13195	0.63	+0.9
2,807,381	+		CSW01_13195	0.63	+1.8
2,807,381	+		CSW01_13195	0.63	+0.3
2,807,381	+		CSW01_13195	0.63	-0.3
2,807,381	+		CSW01_13195	0.63	+0.8
2,807,381	+		CSW01_13195	0.63	-1.6
2,807,389	-		CSW01_13195	0.63	-0.4
2,807,389	-		CSW01_13195	0.63	-3.3
2,807,389	-		CSW01_13195	0.63	-2.9
2,807,389	-		CSW01_13195	0.63	+1.4
2,807,417	+		CSW01_13195	0.65	+3.3
2,807,425	-		CSW01_13195	0.65	-1.6
2,807,425	-		CSW01_13195	0.65	-0.4
2,807,450	-		CSW01_13195	0.67	+1.2
2,807,450	-		CSW01_13195	0.67	+0.5
2,807,500	-		CSW01_13195	0.69	+1.4
2,807,525	-		CSW01_13195	0.71	-0.3
2,807,556	-		CSW01_13195	0.73	-1.3
2,807,566	+		CSW01_13195	0.73	+0.1
2,807,574	+		CSW01_13195	0.74	+0.8
2,807,620	+		CSW01_13195	0.76	-0.4
2,807,620	+		CSW01_13195	0.76	+2.2
2,807,628	-		CSW01_13195	0.77	+0.1
2,807,628	-		CSW01_13195	0.77	+1.7
2,807,635	+		CSW01_13195	0.77	-0.3
2,807,635	-		CSW01_13195	0.77	+0.5
2,807,635	-		CSW01_13195	0.77	+0.8
2,807,677	+		CSW01_13195	0.79	+1.8
2,807,677	+		CSW01_13195	0.79	+1.0
2,807,685	-		CSW01_13195	0.80	-1.4
2,807,698	-		CSW01_13195	0.80	+0.7
2,807,738	-		CSW01_13195	0.83	-1.6
2,807,758	-		CSW01_13195	0.84	-2.3
2,807,779	-		CSW01_13195	0.85	+0.7
2,807,821	+		CSW01_13195	0.87	+1.6
2,807,821	+		CSW01_13195	0.87	+1.6
2,807,821	+		CSW01_13195	0.87	-1.6
2,807,821	+		CSW01_13195	0.87	+1.2
2,807,821	+		CSW01_13195	0.87	-2.0
2,807,821	+		CSW01_13195	0.87	+0.0
2,807,829	-		CSW01_13195	0.88	-1.6
2,807,829	-		CSW01_13195	0.88	-2.3
2,807,829	-		CSW01_13195	0.88	-0.3
2,807,843	+		CSW01_13195	0.89	-3.4
2,807,849	+		CSW01_13195	0.89	-0.5
2,807,853	+		CSW01_13195	0.89	+0.9
2,807,879	+				+0.4
2,807,879	+				+0.4
2,807,879	+				-2.4
2,807,879	+				+0.5
2,807,879	+				+1.6
2,807,887	-				+1.9
2,807,887	-				+1.4
2,807,916	-				-1.6
2,807,954	+				-3.6
2,807,954	+				+2.5
2,807,954	+				-0.3
2,807,954	+				+2.1
2,807,954	+				-2.5
2,807,954	+				+0.2
2,807,954	+				-2.3
2,807,954	+				+1.1
2,807,954	+				-0.2
2,807,954	+				+1.4
2,807,954	+				-0.3
2,807,962	-				+1.1
2,807,962	-				+1.1
2,807,962	-				+0.2
2,807,962	-				+0.3
2,807,962	-				+0.6
2,807,962	-				+0.3
2,807,962	-				+1.0
2,807,962	-				-1.6
2,807,962	-				-0.8
2,807,962	-				+1.0
2,807,962	-				-2.6
2,807,971	+				+0.3
2,807,971	+				-0.0
2,807,978	+				-0.1
2,807,978	+				-3.5
2,807,979	-				-0.1
2,807,979	-				-1.1
2,807,985	-				-3.0
2,807,986	-				-3.8
2,807,986	-				-2.6
2,807,986	-				+1.4
2,807,995	-				-0.3
2,808,043	-				-1.3
2,808,056	+				-4.6
2,808,085	-				+0.3
2,808,117	+		CSW01_13200	0.15	-2.9
2,808,117	+		CSW01_13200	0.15	+0.2
2,808,117	+		CSW01_13200	0.15	-0.3
2,808,117	+		CSW01_13200	0.15	+0.8
2,808,117	+		CSW01_13200	0.15	+0.3
2,808,119	+		CSW01_13200	0.15	-3.1
2,808,139	+		CSW01_13200	0.18	-0.7
2,808,144	+		CSW01_13200	0.19	-2.4
2,808,158	+		CSW01_13200	0.22	-0.1
2,808,229	+		CSW01_13200	0.34	+0.2
2,808,229	-		CSW01_13200	0.34	-2.1
2,808,230	+		CSW01_13200	0.34	-1.3
2,808,231	+		CSW01_13200	0.34	+1.9
2,808,275	+		CSW01_13200	0.41	-0.0
2,808,293	-		CSW01_13200	0.45	+0.4
2,808,324	+		CSW01_13200	0.50	-3.1
2,808,324	+		CSW01_13200	0.50	-2.9
2,808,332	-		CSW01_13200	0.51	+1.1
2,808,368	-		CSW01_13200	0.57	-3.9
2,808,373	+		CSW01_13200	0.58	-0.4
2,808,378	+		CSW01_13200	0.59	-0.2
2,808,381	-		CSW01_13200	0.59	+3.1
2,808,386	-		CSW01_13200	0.60	+0.9
2,808,437	+		CSW01_13200	0.69	-0.1
2,808,467	+		CSW01_13200	0.74	+1.3
2,808,475	+		CSW01_13200	0.75	-0.6
2,808,475	+		CSW01_13200	0.75	-3.0
2,808,553	+		CSW01_13200	0.88	+1.5
2,808,553	+		CSW01_13200	0.88	+0.4
2,808,556	-		CSW01_13200	0.89	-1.4
2,808,576	-				-0.0
2,808,596	+				-0.2
2,808,612	+				+0.3
2,808,630	-				-2.6
2,808,630	-				-0.4
2,808,881	+				+0.9
2,808,889	-				-0.6
2,808,889	-				+1.2
2,808,889	-				-3.3
2,808,889	-				+0.5
2,808,889	-				+1.5
2,808,889	-				-2.8
2,808,898	+				+1.5
2,808,931	+				-0.5
2,808,936	+		CSW01_13205	0.10	-3.1
2,808,941	+		CSW01_13205	0.10	+1.2
2,808,941	+		CSW01_13205	0.10	+1.5
2,808,941	+		CSW01_13205	0.10	-1.9
2,808,941	+		CSW01_13205	0.10	-4.4
2,808,941	+		CSW01_13205	0.10	+1.3
2,808,941	+		CSW01_13205	0.10	+0.5
2,808,941	+		CSW01_13205	0.10	+0.1
2,808,941	+		CSW01_13205	0.10	-2.6
2,808,941	+		CSW01_13205	0.10	-4.5
2,808,941	+		CSW01_13205	0.10	-0.3
2,808,946	+		CSW01_13205	0.11	-2.1
2,808,946	+		CSW01_13205	0.11	-1.6
2,808,949	-		CSW01_13205	0.11	+0.2
2,808,949	-		CSW01_13205	0.11	+1.1
2,808,949	-		CSW01_13205	0.11	-4.8
2,808,949	-		CSW01_13205	0.11	-3.5
2,808,949	-		CSW01_13205	0.11	-2.7
2,808,969	-		CSW01_13205	0.12	+0.6
2,808,971	+		CSW01_13205	0.12	+1.0
2,808,981	+		CSW01_13205	0.12	+1.3
2,808,989	-		CSW01_13205	0.13	-0.9
2,808,989	-		CSW01_13205	0.13	-1.0
2,808,989	-		CSW01_13205	0.13	+0.4