Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12980

Experiment: ICP1_phage_23.5_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_23.5_MOI_rep1
2,776,647	-		CSW01_12970	0.90	+0.6
2,776,667	-				+0.0
2,776,677	+				+0.8
2,776,774	+				-3.4
2,776,817	+				-0.2
2,776,979	+				+2.9
2,776,979	+				-2.4
2,776,987	-				-0.2
2,776,987	-				+0.5
2,776,987	-				+0.1
2,777,038	+		CSW01_12975	0.12	+0.3
2,777,046	-		CSW01_12975	0.14	+1.1
2,777,046	-		CSW01_12975	0.14	-2.0
2,777,087	+		CSW01_12975	0.21	+1.3
2,777,093	+		CSW01_12975	0.22	+0.6
2,777,124	+		CSW01_12975	0.27	-2.4
2,777,124	+		CSW01_12975	0.27	-1.2
2,777,126	+		CSW01_12975	0.28	+0.6
2,777,145	-		CSW01_12975	0.31	-0.9
2,777,185	-		CSW01_12975	0.38	-0.0
2,777,187	+		CSW01_12975	0.38	+0.7
2,777,195	-		CSW01_12975	0.40	+1.4
2,777,240	-		CSW01_12975	0.48	+0.3
2,777,254	+		CSW01_12975	0.50	-0.6
2,777,254	+		CSW01_12975	0.50	+1.1
2,777,262	-		CSW01_12975	0.52	-4.2
2,777,395	+		CSW01_12975	0.75	+0.9
2,777,450	+		CSW01_12975	0.85	+0.8
2,777,610	-				-4.0
2,777,629	+				+0.8
2,777,656	+				-2.7
2,777,656	+				-0.3
2,777,656	+				-0.4
2,777,692	-		CSW01_12980	0.11	+0.3
2,777,694	+		CSW01_12980	0.11	+0.4
2,777,756	-		CSW01_12980	0.16	+0.1
2,777,814	+		CSW01_12980	0.20	-2.5
2,777,821	-		CSW01_12980	0.20	+1.7
2,777,868	+		CSW01_12980	0.24	+0.1
2,777,894	+		CSW01_12980	0.26	+1.3
2,777,901	-		CSW01_12980	0.26	+0.2
2,777,902	-		CSW01_12980	0.26	-0.5
2,777,908	-		CSW01_12980	0.27	-0.0
2,777,935	+		CSW01_12980	0.29	-1.0
2,777,944	-		CSW01_12980	0.29	+1.0
2,777,972	+		CSW01_12980	0.31	-0.1
2,777,982	+		CSW01_12980	0.32	+1.8
2,778,027	-		CSW01_12980	0.35	-3.1
2,778,078	+		CSW01_12980	0.39	+1.1
2,778,086	-		CSW01_12980	0.39	-1.1
2,778,086	-		CSW01_12980	0.39	+0.7
2,778,088	+		CSW01_12980	0.40	+0.7
2,778,091	+		CSW01_12980	0.40	+1.2
2,778,115	+		CSW01_12980	0.42	-0.7
2,778,115	+		CSW01_12980	0.42	-1.9
2,778,139	-		CSW01_12980	0.43	-3.0
2,778,148	+		CSW01_12980	0.44	+1.6
2,778,176	-		CSW01_12980	0.46	-0.2
2,778,176	-		CSW01_12980	0.46	-0.7
2,778,181	+		CSW01_12980	0.46	-1.3
2,778,195	+		CSW01_12980	0.47	+1.2
2,778,245	+		CSW01_12980	0.51	-3.3
2,778,253	-		CSW01_12980	0.52	+1.1
2,778,322	+		CSW01_12980	0.57	+0.6
2,778,381	+		CSW01_12980	0.61	-4.4
2,778,382	-		CSW01_12980	0.61	-1.5
2,778,473	+		CSW01_12980	0.67	-2.3
2,778,474	+		CSW01_12980	0.68	-3.7
2,778,474	+		CSW01_12980	0.68	+0.7
2,778,474	+		CSW01_12980	0.68	-2.5
2,778,474	+		CSW01_12980	0.68	+0.3
2,778,474	+		CSW01_12980	0.68	-1.3
2,778,474	-		CSW01_12980	0.68	-0.0
2,778,475	-		CSW01_12980	0.68	+0.9
2,778,479	-		CSW01_12980	0.68	-3.2
2,778,482	-		CSW01_12980	0.68	+3.1
2,778,482	-		CSW01_12980	0.68	+0.9
2,778,482	-		CSW01_12980	0.68	+0.6
2,778,506	+		CSW01_12980	0.70	+1.7
2,778,559	+		CSW01_12980	0.74	+0.4
2,778,594	+		CSW01_12980	0.76	-2.0
2,778,594	+		CSW01_12980	0.76	-1.4
2,778,681	+		CSW01_12980	0.83	-0.3
2,778,691	+		CSW01_12980	0.83	-0.6
2,778,691	+		CSW01_12980	0.83	+0.8
2,778,699	-		CSW01_12980	0.84	+0.7
2,778,801	+				-1.8
2,778,802	-				+0.5
2,778,809	-				-0.2
2,778,838	+				+2.6
2,778,846	-				+1.8
2,778,909	+				-3.8
2,779,014	+				-0.3
2,779,014	+				-2.4
2,779,014	+				+1.9
2,779,014	+				-5.4
2,779,014	+				-1.0
2,779,022	-				+0.4
2,779,022	-				-0.3
2,779,022	-				-2.0
2,779,047	+				-0.1
2,779,047	+				+0.7
2,779,049	+				+1.1
2,779,055	-				-2.5
2,779,055	-				-0.6
2,779,055	-				-2.5
2,779,055	-				+1.7
2,779,065	-				+0.2
2,779,188	+				+1.1
2,779,207	+		CSW01_12985	0.13	-0.6
2,779,238	+		CSW01_12985	0.20	+0.2
2,779,238	+		CSW01_12985	0.20	-0.7
2,779,243	+		CSW01_12985	0.21	+0.9
2,779,243	+		CSW01_12985	0.21	-0.3
2,779,243	+		CSW01_12985	0.21	-0.1
2,779,243	+		CSW01_12985	0.21	+0.7
2,779,251	-		CSW01_12985	0.23	+2.2
2,779,251	-		CSW01_12985	0.23	-0.3
2,779,251	-		CSW01_12985	0.23	-0.2
2,779,251	-		CSW01_12985	0.23	+0.0
2,779,251	-		CSW01_12985	0.23	+0.4
2,779,282	+		CSW01_12985	0.30	+1.5
2,779,337	+		CSW01_12985	0.42	+0.3
2,779,337	+		CSW01_12985	0.42	+0.4
2,779,345	-		CSW01_12985	0.44	+0.7
2,779,353	+		CSW01_12985	0.46	+0.3
2,779,362	+		CSW01_12985	0.48	+0.4
2,779,362	+		CSW01_12985	0.48	-2.4
2,779,368	+		CSW01_12985	0.49	-2.3
2,779,370	-		CSW01_12985	0.49	+0.2
2,779,370	-		CSW01_12985	0.49	+0.2
2,779,376	-		CSW01_12985	0.51	+0.7
2,779,399	-		CSW01_12985	0.56	-1.2
2,779,451	-		CSW01_12985	0.67	+0.7
2,779,531	-		CSW01_12985	0.85	+0.1
2,779,672	+				-0.6
2,779,738	+		CSW01_12990	0.17	+0.7
2,779,743	+		CSW01_12990	0.18	-0.5
2,779,743	+		CSW01_12990	0.18	+0.4
2,779,743	+		CSW01_12990	0.18	-1.8
2,779,743	+		CSW01_12990	0.18	-3.3
2,779,743	+		CSW01_12990	0.18	-0.1
2,779,743	+		CSW01_12990	0.18	-0.5
2,779,751	-		CSW01_12990	0.19	-2.2
2,779,751	-		CSW01_12990	0.19	-0.1
2,779,751	-		CSW01_12990	0.19	-2.5
2,779,751	-		CSW01_12990	0.19	+0.1
2,779,751	-		CSW01_12990	0.19	+1.0
2,779,774	+		CSW01_12990	0.21	+0.0
2,779,774	+		CSW01_12990	0.21	+0.6
2,779,804	+		CSW01_12990	0.25	-3.9
2,779,819	+		CSW01_12990	0.27	+0.9
2,779,827	-		CSW01_12990	0.28	-1.9
2,779,827	-		CSW01_12990	0.28	-1.0
2,779,827	-		CSW01_12990	0.28	-2.9
2,779,827	-		CSW01_12990	0.28	-0.5
2,779,870	+		CSW01_12990	0.33	+1.7
2,779,878	-		CSW01_12990	0.34	-4.8
2,779,878	-		CSW01_12990	0.34	-2.2
2,779,878	-		CSW01_12990	0.34	+1.4
2,779,878	-		CSW01_12990	0.34	-3.5
2,779,878	-		CSW01_12990	0.34	-0.3
2,779,893	+		CSW01_12990	0.36	+1.2
2,779,893	+		CSW01_12990	0.36	-0.1
2,779,893	+		CSW01_12990	0.36	-3.2
2,779,893	+		CSW01_12990	0.36	+0.2
2,779,893	+		CSW01_12990	0.36	+0.3
2,779,893	+		CSW01_12990	0.36	+0.7
2,779,893	+		CSW01_12990	0.36	+0.2
2,779,901	-		CSW01_12990	0.37	+0.1
2,779,901	-		CSW01_12990	0.37	+1.4
2,779,901	-		CSW01_12990	0.37	+0.8
2,779,901	-		CSW01_12990	0.37	-0.4