Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11395

Experiment: ICP1_phage_23.5_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_23.5_MOI_rep1
2,420,696	+				+0.5
2,420,749	+				-1.0
2,420,749	+				-2.3
2,420,757	-				+0.3
2,420,969	+		CSW01_11390	0.28	-0.7
2,421,048	-		CSW01_11390	0.39	-1.8
2,421,051	+		CSW01_11390	0.39	+0.6
2,421,059	-		CSW01_11390	0.40	-3.1
2,421,079	+		CSW01_11390	0.43	-1.2
2,421,112	+		CSW01_11390	0.47	-2.8
2,421,120	-		CSW01_11390	0.49	+1.2
2,421,146	+		CSW01_11390	0.52	-2.4
2,421,176	+		CSW01_11390	0.56	-1.2
2,421,225	+		CSW01_11390	0.63	-3.2
2,421,231	-		CSW01_11390	0.64	+1.3
2,421,298	+		CSW01_11390	0.73	-0.0
2,421,344	+		CSW01_11390	0.79	-1.5
2,421,344	+		CSW01_11390	0.79	+1.9
2,421,344	+		CSW01_11390	0.79	-0.9
2,421,352	-		CSW01_11390	0.80	+0.7
2,421,392	+		CSW01_11390	0.85	+1.2
2,421,392	+		CSW01_11390	0.85	+1.6
2,421,405	-		CSW01_11390	0.87	-0.4
2,421,407	+		CSW01_11390	0.87	-0.1
2,421,407	+		CSW01_11390	0.87	-3.3
2,421,415	-		CSW01_11390	0.88	+1.2
2,421,415	-		CSW01_11390	0.88	-0.2
2,421,475	+				-1.8
2,421,631	+		CSW01_11395	0.12	+0.2
2,421,631	+		CSW01_11395	0.12	-0.2
2,421,631	+		CSW01_11395	0.12	-2.1
2,421,631	+		CSW01_11395	0.12	-2.6
2,421,639	-		CSW01_11395	0.13	+0.4
2,421,639	-		CSW01_11395	0.13	+0.9
2,421,639	-		CSW01_11395	0.13	+0.1
2,421,652	+		CSW01_11395	0.15	+1.2
2,421,674	+		CSW01_11395	0.18	+1.0
2,421,774	-		CSW01_11395	0.31	-1.3
2,421,779	-		CSW01_11395	0.32	+0.6
2,421,871	+		CSW01_11395	0.44	-0.2
2,421,871	+		CSW01_11395	0.44	-0.6
2,421,871	+		CSW01_11395	0.44	+0.3
2,421,871	+		CSW01_11395	0.44	-2.6
2,421,871	+		CSW01_11395	0.44	+0.2
2,421,871	+		CSW01_11395	0.44	-1.7
2,421,871	+		CSW01_11395	0.44	-2.4
2,421,871	+		CSW01_11395	0.44	+1.0
2,421,871	+		CSW01_11395	0.44	-3.0
2,421,871	+		CSW01_11395	0.44	+0.6
2,421,871	+		CSW01_11395	0.44	+0.1
2,421,872	-		CSW01_11395	0.44	-0.6
2,421,879	-		CSW01_11395	0.45	-1.0
2,421,879	-		CSW01_11395	0.45	+1.8
2,421,879	-		CSW01_11395	0.45	+0.8
2,421,879	-		CSW01_11395	0.45	-1.0
2,421,879	-		CSW01_11395	0.45	-0.7
2,421,879	-		CSW01_11395	0.45	+1.9
2,421,879	-		CSW01_11395	0.45	+0.1
2,421,879	-		CSW01_11395	0.45	+1.1
2,421,879	-		CSW01_11395	0.45	+0.9
2,421,879	-		CSW01_11395	0.45	-3.2
2,421,916	-		CSW01_11395	0.50	-0.1
2,421,979	-		CSW01_11395	0.58	+0.8
2,421,981	+		CSW01_11395	0.58	+1.0
2,422,005	+		CSW01_11395	0.62	-0.2
2,422,012	-		CSW01_11395	0.63	-0.3
2,422,032	+		CSW01_11395	0.65	+0.3
2,422,032	+		CSW01_11395	0.65	+0.1
2,422,034	+		CSW01_11395	0.65	-0.9
2,422,040	-		CSW01_11395	0.66	+1.3
2,422,040	-		CSW01_11395	0.66	-0.6
2,422,163	-		CSW01_11395	0.82	+0.7
2,422,195	+		CSW01_11395	0.87	-2.0
2,422,195	+		CSW01_11395	0.87	-0.1
2,422,203	-		CSW01_11395	0.88	+1.3
2,422,203	-		CSW01_11395	0.88	+0.7
2,422,203	-		CSW01_11395	0.88	+0.7
2,422,203	-		CSW01_11395	0.88	-0.6
2,422,274	-				-0.5
2,422,355	+				+2.0
2,422,396	-				-0.0
2,422,465	-				-2.8
2,422,487	-				-0.6
2,422,588	-		CSW01_11400	0.14	-0.7
2,422,607	+		CSW01_11400	0.15	+0.1
2,422,615	+		CSW01_11400	0.16	-1.3
2,422,637	+		CSW01_11400	0.17	-2.0
2,422,714	+		CSW01_11400	0.22	-0.2
2,422,844	-		CSW01_11400	0.30	+1.5
2,422,875	-		CSW01_11400	0.32	+1.5
2,422,901	-		CSW01_11400	0.33	-0.1
2,422,939	+		CSW01_11400	0.36	+1.8
2,422,939	+		CSW01_11400	0.36	+0.7
2,422,939	+		CSW01_11400	0.36	-0.2
2,422,947	-		CSW01_11400	0.36	+1.4
2,422,952	+		CSW01_11400	0.37	+1.5
2,422,952	+		CSW01_11400	0.37	+0.3
2,422,952	+		CSW01_11400	0.37	+0.3
2,422,960	-		CSW01_11400	0.37	-2.3
2,422,960	-		CSW01_11400	0.37	-2.2
2,422,960	-		CSW01_11400	0.37	-2.3
2,422,966	+		CSW01_11400	0.37	-0.2
2,423,005	-		CSW01_11400	0.40	+0.4
2,423,015	-		CSW01_11400	0.41	+1.1
2,423,017	-		CSW01_11400	0.41	+1.0
2,423,017	-		CSW01_11400	0.41	-2.3
2,423,017	-		CSW01_11400	0.41	+0.1
2,423,017	-		CSW01_11400	0.41	+1.9
2,423,100	+		CSW01_11400	0.46	-0.3
2,423,103	+		CSW01_11400	0.46	-0.9
2,423,111	-		CSW01_11400	0.47	-0.9
2,423,123	+		CSW01_11400	0.47	+0.2
2,423,192	+		CSW01_11400	0.52	+0.6
2,423,192	+		CSW01_11400	0.52	-1.7
2,423,192	+		CSW01_11400	0.52	-2.1
2,423,192	+		CSW01_11400	0.52	+1.4
2,423,192	+		CSW01_11400	0.52	-3.0
2,423,200	-		CSW01_11400	0.52	-1.0
2,423,200	-		CSW01_11400	0.52	+0.7
2,423,200	-		CSW01_11400	0.52	+0.4
2,423,200	-		CSW01_11400	0.52	+1.9
2,423,200	-		CSW01_11400	0.52	+1.4
2,423,202	+		CSW01_11400	0.52	-0.7
2,423,245	+		CSW01_11400	0.55	+2.3
2,423,277	+		CSW01_11400	0.57	+0.4
2,423,277	+		CSW01_11400	0.57	-3.3
2,423,277	+		CSW01_11400	0.57	-0.8
2,423,277	+		CSW01_11400	0.57	+0.5
2,423,277	+		CSW01_11400	0.57	-0.9
2,423,277	+		CSW01_11400	0.57	-1.0
2,423,277	+		CSW01_11400	0.57	-0.6
2,423,277	+		CSW01_11400	0.57	-0.4
2,423,277	+		CSW01_11400	0.57	-4.0
2,423,285	-		CSW01_11400	0.57	-1.0
2,423,285	-		CSW01_11400	0.57	-0.9
2,423,285	-		CSW01_11400	0.57	-1.4
2,423,285	-		CSW01_11400	0.57	-2.2
2,423,285	-		CSW01_11400	0.57	-0.7
2,423,285	-		CSW01_11400	0.57	+1.8
2,423,285	-		CSW01_11400	0.57	-2.6
2,423,285	-		CSW01_11400	0.57	-0.6
2,423,286	-		CSW01_11400	0.57	+0.8
2,423,286	-		CSW01_11400	0.57	+0.7
2,423,286	-		CSW01_11400	0.57	-2.1
2,423,288	+		CSW01_11400	0.58	+0.2
2,423,288	+		CSW01_11400	0.58	-3.5