Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09020

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09005 and CSW01_09010 overlap by 89 nucleotidesCSW01_09010 and CSW01_09015 overlap by 4 nucleotidesCSW01_09015 and CSW01_09020 are separated by 2 nucleotidesCSW01_09020 and CSW01_09025 overlap by 71 nucleotides CSW01_09005: CSW01_09005 - regulator of ribonuclease activity A, at 1,941,196 to 1,941,462 _09005 CSW01_09010: CSW01_09010 - hypothetical protein, at 1,941,374 to 1,941,607 _09010 CSW01_09015: CSW01_09015 - hypothetical protein, at 1,941,604 to 1,942,065 _09015 CSW01_09020: CSW01_09020 - AAA family ATPase, at 1,942,068 to 1,943,219 _09020 CSW01_09025: CSW01_09025 - transposase, at 1,943,149 to 1,944,906 _09025 Position (kb) 1942 1943 1944Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1941.221 kb on + strandat 1941.311 kb on + strand, within CSW01_09005at 1941.316 kb on - strand, within CSW01_09005at 1941.328 kb on + strand, within CSW01_09005at 1941.334 kb on + strand, within CSW01_09005at 1941.334 kb on + strand, within CSW01_09005at 1941.342 kb on - strand, within CSW01_09005at 1941.342 kb on - strand, within CSW01_09005at 1941.370 kb on - strand, within CSW01_09005at 1941.472 kb on - strand, within CSW01_09010at 1941.583 kb on - strand, within CSW01_09010at 1941.653 kb on - strand, within CSW01_09015at 1941.654 kb on + strand, within CSW01_09015at 1941.681 kb on + strand, within CSW01_09015at 1941.689 kb on - strand, within CSW01_09015at 1941.691 kb on + strand, within CSW01_09015at 1941.691 kb on + strand, within CSW01_09015at 1941.691 kb on + strand, within CSW01_09015at 1941.691 kb on + strand, within CSW01_09015at 1941.691 kb on + strand, within CSW01_09015at 1941.691 kb on + strand, within CSW01_09015at 1941.691 kb on + strand, within CSW01_09015at 1941.691 kb on + strand, within CSW01_09015at 1941.699 kb on - strand, within CSW01_09015at 1941.699 kb on - strand, within CSW01_09015at 1941.699 kb on - strand, within CSW01_09015at 1941.699 kb on - strand, within CSW01_09015at 1941.699 kb on - strand, within CSW01_09015at 1941.699 kb on - strand, within CSW01_09015at 1941.699 kb on - strand, within CSW01_09015at 1941.707 kb on - strand, within CSW01_09015at 1941.743 kb on + strand, within CSW01_09015at 1941.799 kb on - strand, within CSW01_09015at 1941.942 kb on - strand, within CSW01_09015at 1941.957 kb on - strand, within CSW01_09015at 1941.967 kb on + strand, within CSW01_09015at 1941.967 kb on - strand, within CSW01_09015at 1942.015 kb on - strand, within CSW01_09015at 1942.020 kb on - strandat 1942.068 kb on - strandat 1942.076 kb on + strandat 1942.084 kb on - strandat 1942.145 kb on + strandat 1942.182 kb on - strandat 1942.310 kb on + strand, within CSW01_09020at 1942.325 kb on - strand, within CSW01_09020at 1942.370 kb on + strand, within CSW01_09020at 1942.378 kb on - strand, within CSW01_09020at 1942.525 kb on + strand, within CSW01_09020at 1942.525 kb on + strand, within CSW01_09020at 1942.525 kb on + strand, within CSW01_09020at 1942.528 kb on - strand, within CSW01_09020at 1942.571 kb on + strand, within CSW01_09020at 1942.581 kb on + strand, within CSW01_09020at 1942.589 kb on - strand, within CSW01_09020at 1942.589 kb on - strand, within CSW01_09020at 1942.589 kb on - strand, within CSW01_09020at 1942.660 kb on + strand, within CSW01_09020at 1942.728 kb on + strand, within CSW01_09020at 1942.736 kb on - strand, within CSW01_09020at 1942.841 kb on - strand, within CSW01_09020at 1942.843 kb on + strand, within CSW01_09020at 1942.922 kb on + strand, within CSW01_09020at 1942.953 kb on - strand, within CSW01_09020at 1943.085 kb on + strand, within CSW01_09020at 1943.085 kb on + strand, within CSW01_09020at 1943.085 kb on + strand, within CSW01_09020at 1943.095 kb on + strand, within CSW01_09020at 1943.095 kb on + strand, within CSW01_09020at 1943.095 kb on + strand, within CSW01_09020at 1943.098 kb on - strand, within CSW01_09020at 1943.101 kb on - strand, within CSW01_09020at 1943.103 kb on - strand, within CSW01_09020at 1943.103 kb on - strand, within CSW01_09020at 1943.103 kb on - strand, within CSW01_09020at 1943.103 kb on - strand, within CSW01_09020at 1943.103 kb on - strand, within CSW01_09020at 1943.103 kb on - strand, within CSW01_09020at 1943.103 kb on - strand, within CSW01_09020at 1943.121 kb on + strandat 1943.214 kb on - strandat 1943.290 kb on + strandat 1943.298 kb on - strandat 1943.345 kb on + strand, within CSW01_09025at 1943.345 kb on + strand, within CSW01_09025at 1943.345 kb on + strand, within CSW01_09025at 1943.345 kb on + strand, within CSW01_09025at 1943.345 kb on + strand, within CSW01_09025at 1943.345 kb on + strand, within CSW01_09025at 1943.345 kb on + strand, within CSW01_09025at 1943.345 kb on + strand, within CSW01_09025at 1943.353 kb on - strand, within CSW01_09025at 1943.353 kb on - strand, within CSW01_09025at 1943.368 kb on + strand, within CSW01_09025at 1943.388 kb on + strand, within CSW01_09025at 1943.475 kb on + strand, within CSW01_09025at 1943.483 kb on - strand, within CSW01_09025at 1943.515 kb on + strand, within CSW01_09025at 1943.530 kb on + strand, within CSW01_09025at 1943.530 kb on + strand, within CSW01_09025at 1943.530 kb on + strand, within CSW01_09025at 1943.530 kb on + strand, within CSW01_09025at 1943.563 kb on + strand, within CSW01_09025at 1943.654 kb on - strand, within CSW01_09025at 1943.723 kb on + strand, within CSW01_09025at 1943.738 kb on - strand, within CSW01_09025at 1943.791 kb on - strand, within CSW01_09025at 1943.863 kb on - strand, within CSW01_09025at 1943.864 kb on + strand, within CSW01_09025at 1943.940 kb on - strand, within CSW01_09025at 1943.965 kb on + strand, within CSW01_09025at 1943.973 kb on - strand, within CSW01_09025at 1943.991 kb on + strand, within CSW01_09025at 1943.991 kb on + strand, within CSW01_09025at 1943.991 kb on + strand, within CSW01_09025at 1943.999 kb on - strand, within CSW01_09025at 1943.999 kb on - strand, within CSW01_09025at 1943.999 kb on - strand, within CSW01_09025at 1944.035 kb on - strand, within CSW01_09025at 1944.090 kb on - strand, within CSW01_09025at 1944.186 kb on + strand, within CSW01_09025at 1944.186 kb on + strand, within CSW01_09025

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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1,941,221 + +0.5
1,941,311 + CSW01_09005 0.43 -2.6
1,941,316 - CSW01_09005 0.45 -3.7
1,941,328 + CSW01_09005 0.49 +0.6
1,941,334 + CSW01_09005 0.52 -0.2
1,941,334 + CSW01_09005 0.52 -0.3
1,941,342 - CSW01_09005 0.55 -0.6
1,941,342 - CSW01_09005 0.55 -0.7
1,941,370 - CSW01_09005 0.65 -0.6
1,941,472 - CSW01_09010 0.42 +1.0
1,941,583 - CSW01_09010 0.89 -2.8
1,941,653 - CSW01_09015 0.11 +1.4
1,941,654 + CSW01_09015 0.11 +0.8
1,941,681 + CSW01_09015 0.17 -1.1
1,941,689 - CSW01_09015 0.18 -0.5
1,941,691 + CSW01_09015 0.19 -1.4
1,941,691 + CSW01_09015 0.19 -0.2
1,941,691 + CSW01_09015 0.19 +0.8
1,941,691 + CSW01_09015 0.19 +2.9
1,941,691 + CSW01_09015 0.19 +1.0
1,941,691 + CSW01_09015 0.19 -0.9
1,941,691 + CSW01_09015 0.19 +0.6
1,941,691 + CSW01_09015 0.19 +0.6
1,941,699 - CSW01_09015 0.21 -0.2
1,941,699 - CSW01_09015 0.21 -2.9
1,941,699 - CSW01_09015 0.21 +1.1
1,941,699 - CSW01_09015 0.21 -0.1
1,941,699 - CSW01_09015 0.21 -0.3
1,941,699 - CSW01_09015 0.21 -2.1
1,941,699 - CSW01_09015 0.21 -0.8
1,941,707 - CSW01_09015 0.22 -1.7
1,941,743 + CSW01_09015 0.30 +0.0
1,941,799 - CSW01_09015 0.42 -2.2
1,941,942 - CSW01_09015 0.73 -0.5
1,941,957 - CSW01_09015 0.76 +0.2
1,941,967 + CSW01_09015 0.79 -3.2
1,941,967 - CSW01_09015 0.79 +0.3
1,942,015 - CSW01_09015 0.89 +0.1
1,942,020 - -0.7
1,942,068 - +0.1
1,942,076 + -0.7
1,942,084 - -0.2
1,942,145 + +0.4
1,942,182 - +0.2
1,942,310 + CSW01_09020 0.21 +0.1
1,942,325 - CSW01_09020 0.22 +1.9
1,942,370 + CSW01_09020 0.26 +1.2
1,942,378 - CSW01_09020 0.27 +1.2
1,942,525 + CSW01_09020 0.40 +0.7
1,942,525 + CSW01_09020 0.40 -2.6
1,942,525 + CSW01_09020 0.40 -0.2
1,942,528 - CSW01_09020 0.40 +0.6
1,942,571 + CSW01_09020 0.44 +0.0
1,942,581 + CSW01_09020 0.45 +0.2
1,942,589 - CSW01_09020 0.45 +1.1
1,942,589 - CSW01_09020 0.45 -0.6
1,942,589 - CSW01_09020 0.45 -1.0
1,942,660 + CSW01_09020 0.51 +0.6
1,942,728 + CSW01_09020 0.57 +0.9
1,942,736 - CSW01_09020 0.58 -2.6
1,942,841 - CSW01_09020 0.67 +0.4
1,942,843 + CSW01_09020 0.67 -0.9
1,942,922 + CSW01_09020 0.74 +0.4
1,942,953 - CSW01_09020 0.77 -1.8
1,943,085 + CSW01_09020 0.88 -0.6
1,943,085 + CSW01_09020 0.88 -3.1
1,943,085 + CSW01_09020 0.88 -0.8
1,943,095 + CSW01_09020 0.89 +0.1
1,943,095 + CSW01_09020 0.89 +1.5
1,943,095 + CSW01_09020 0.89 -0.8
1,943,098 - CSW01_09020 0.89 +1.3
1,943,101 - CSW01_09020 0.90 -0.8
1,943,103 - CSW01_09020 0.90 -2.4
1,943,103 - CSW01_09020 0.90 +0.3
1,943,103 - CSW01_09020 0.90 -1.8
1,943,103 - CSW01_09020 0.90 +1.1
1,943,103 - CSW01_09020 0.90 +2.7
1,943,103 - CSW01_09020 0.90 -1.8
1,943,103 - CSW01_09020 0.90 -1.6
1,943,121 + -3.4
1,943,214 - -1.4
1,943,290 + -0.2
1,943,298 - -2.5
1,943,345 + CSW01_09025 0.11 +0.2
1,943,345 + CSW01_09025 0.11 -1.3
1,943,345 + CSW01_09025 0.11 +0.8
1,943,345 + CSW01_09025 0.11 +1.4
1,943,345 + CSW01_09025 0.11 +1.4
1,943,345 + CSW01_09025 0.11 -0.3
1,943,345 + CSW01_09025 0.11 -0.5
1,943,345 + CSW01_09025 0.11 -0.4
1,943,353 - CSW01_09025 0.12 -3.3
1,943,353 - CSW01_09025 0.12 -3.7
1,943,368 + CSW01_09025 0.12 +1.1
1,943,388 + CSW01_09025 0.14 -3.7
1,943,475 + CSW01_09025 0.19 -0.0
1,943,483 - CSW01_09025 0.19 -0.4
1,943,515 + CSW01_09025 0.21 +1.8
1,943,530 + CSW01_09025 0.22 +1.5
1,943,530 + CSW01_09025 0.22 +0.2
1,943,530 + CSW01_09025 0.22 -1.1
1,943,530 + CSW01_09025 0.22 -2.0
1,943,563 + CSW01_09025 0.24 +0.5
1,943,654 - CSW01_09025 0.29 -1.1
1,943,723 + CSW01_09025 0.33 +1.2
1,943,738 - CSW01_09025 0.34 +0.2
1,943,791 - CSW01_09025 0.37 +0.5
1,943,863 - CSW01_09025 0.41 -3.3
1,943,864 + CSW01_09025 0.41 +1.3
1,943,940 - CSW01_09025 0.45 +2.1
1,943,965 + CSW01_09025 0.46 +0.5
1,943,973 - CSW01_09025 0.47 -4.1
1,943,991 + CSW01_09025 0.48 +0.4
1,943,991 + CSW01_09025 0.48 -0.6
1,943,991 + CSW01_09025 0.48 -0.7
1,943,999 - CSW01_09025 0.48 +1.3
1,943,999 - CSW01_09025 0.48 -1.9
1,943,999 - CSW01_09025 0.48 -2.3
1,944,035 - CSW01_09025 0.50 -0.3
1,944,090 - CSW01_09025 0.54 +0.9
1,944,186 + CSW01_09025 0.59 -0.9
1,944,186 + CSW01_09025 0.59 +1.6

Or see this region's nucleotide sequence