Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_07565 and CSW01_07570 are separated by 11 nucleotides CSW01_07570 and CSW01_07575 are separated by 134 nucleotides CSW01_07575 and CSW01_07580 are separated by 97 nucleotides CSW01_07580 and CSW01_07585 overlap by 14 nucleotides
CSW01_07565: CSW01_07565 - 3-deoxy-7-phosphoheptulonate synthase, at 1,619,055 to 1,620,116
_07565
CSW01_07570: CSW01_07570 - nucleotide-binding protein, at 1,620,128 to 1,620,610
_07570
CSW01_07575: CSW01_07575 - NAD-dependent protein deacylase, at 1,620,745 to 1,621,524
_07575
CSW01_07580: CSW01_07580 - hypothetical protein, at 1,621,622 to 1,622,044
_07580
CSW01_07585: CSW01_07585 - formate dehydrogenase subunit gamma, at 1,622,031 to 1,623,104
_07585
Position (kb) 1620
1621
1622 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1619.890 kb on - strand, within CSW01_07565 at 1619.916 kb on - strand, within CSW01_07565 at 1620.123 kb on + strand at 1620.172 kb on + strand at 1620.180 kb on - strand, within CSW01_07570 at 1620.420 kb on + strand, within CSW01_07570 at 1620.420 kb on + strand, within CSW01_07570 at 1620.426 kb on - strand, within CSW01_07570 at 1620.618 kb on - strand at 1620.777 kb on - strand at 1620.817 kb on + strand at 1620.852 kb on + strand, within CSW01_07575 at 1620.876 kb on + strand, within CSW01_07575 at 1620.929 kb on + strand, within CSW01_07575 at 1620.929 kb on + strand, within CSW01_07575 at 1620.937 kb on - strand, within CSW01_07575 at 1621.006 kb on - strand, within CSW01_07575 at 1621.119 kb on + strand, within CSW01_07575 at 1621.119 kb on + strand, within CSW01_07575 at 1621.119 kb on + strand, within CSW01_07575 at 1621.127 kb on - strand, within CSW01_07575 at 1621.127 kb on - strand, within CSW01_07575 at 1621.127 kb on - strand, within CSW01_07575 at 1621.215 kb on + strand, within CSW01_07575 at 1621.215 kb on + strand, within CSW01_07575 at 1621.220 kb on + strand, within CSW01_07575 at 1621.268 kb on + strand, within CSW01_07575 at 1621.268 kb on + strand, within CSW01_07575 at 1621.276 kb on - strand, within CSW01_07575 at 1621.276 kb on - strand, within CSW01_07575 at 1621.276 kb on - strand, within CSW01_07575 at 1621.276 kb on - strand, within CSW01_07575 at 1621.281 kb on - strand, within CSW01_07575 at 1621.472 kb on - strand at 1621.488 kb on - strand at 1621.488 kb on - strand at 1621.488 kb on - strand at 1621.524 kb on - strand at 1621.561 kb on - strand at 1621.609 kb on + strand at 1621.838 kb on + strand, within CSW01_07580 at 1621.872 kb on + strand, within CSW01_07580 at 1621.976 kb on + strand, within CSW01_07580 at 1622.014 kb on + strand at 1622.014 kb on + strand at 1622.029 kb on - strand at 1622.054 kb on - strand at 1622.289 kb on - strand, within CSW01_07585 at 1622.298 kb on + strand, within CSW01_07585 at 1622.416 kb on + strand, within CSW01_07585 at 1622.416 kb on + strand, within CSW01_07585 at 1622.416 kb on + strand, within CSW01_07585 at 1622.424 kb on - strand, within CSW01_07585 at 1622.519 kb on + strand, within CSW01_07585
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 1,619,890 - CSW01_07565 0.79 -3.9 1,619,916 - CSW01_07565 0.81 -2.1 1,620,123 + -1.0 1,620,172 + +0.3 1,620,180 - CSW01_07570 0.11 -0.3 1,620,420 + CSW01_07570 0.60 -0.9 1,620,420 + CSW01_07570 0.60 -0.5 1,620,426 - CSW01_07570 0.62 +0.1 1,620,618 - +0.3 1,620,777 - -1.1 1,620,817 + -1.7 1,620,852 + CSW01_07575 0.14 +2.6 1,620,876 + CSW01_07575 0.17 -0.7 1,620,929 + CSW01_07575 0.24 +0.5 1,620,929 + CSW01_07575 0.24 -2.6 1,620,937 - CSW01_07575 0.25 -1.7 1,621,006 - CSW01_07575 0.33 -2.2 1,621,119 + CSW01_07575 0.48 -0.9 1,621,119 + CSW01_07575 0.48 +0.5 1,621,119 + CSW01_07575 0.48 +2.7 1,621,127 - CSW01_07575 0.49 +0.9 1,621,127 - CSW01_07575 0.49 -0.0 1,621,127 - CSW01_07575 0.49 -1.4 1,621,215 + CSW01_07575 0.60 +2.2 1,621,215 + CSW01_07575 0.60 +1.6 1,621,220 + CSW01_07575 0.61 -0.8 1,621,268 + CSW01_07575 0.67 +1.1 1,621,268 + CSW01_07575 0.67 +1.8 1,621,276 - CSW01_07575 0.68 +0.2 1,621,276 - CSW01_07575 0.68 +0.3 1,621,276 - CSW01_07575 0.68 -1.6 1,621,276 - CSW01_07575 0.68 -1.3 1,621,281 - CSW01_07575 0.69 -0.3 1,621,472 - +1.6 1,621,488 - +0.4 1,621,488 - -2.7 1,621,488 - +0.6 1,621,524 - -0.9 1,621,561 - -0.3 1,621,609 + +0.3 1,621,838 + CSW01_07580 0.51 -0.8 1,621,872 + CSW01_07580 0.59 -2.2 1,621,976 + CSW01_07580 0.84 -2.6 1,622,014 + -0.1 1,622,014 + -0.4 1,622,029 - -2.1 1,622,054 - -0.2 1,622,289 - CSW01_07585 0.24 -2.5 1,622,298 + CSW01_07585 0.25 +2.4 1,622,416 + CSW01_07585 0.36 +1.9 1,622,416 + CSW01_07585 0.36 +0.9 1,622,416 + CSW01_07585 0.36 -1.2 1,622,424 - CSW01_07585 0.37 +0.1 1,622,519 + CSW01_07585 0.45 +0.9
Or see this region's nucleotide sequence