Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_05445 and CSW01_05450 are separated by 13 nucleotides CSW01_05450 and CSW01_05455 are separated by 38 nucleotides
CSW01_05445: CSW01_05445 - aldehyde dehydrogenase, at 1,135,037 to 1,136,038
_05445
CSW01_05450: CSW01_05450 - phosphatase, at 1,136,052 to 1,136,549
_05450
CSW01_05455: CSW01_05455 - MFS transporter, at 1,136,588 to 1,137,823
_05455
Position (kb) 1136
1137 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1135.086 kb on - strand at 1135.129 kb on + strand at 1135.129 kb on + strand at 1135.129 kb on + strand at 1135.129 kb on + strand at 1135.187 kb on + strand, within CSW01_05445 at 1135.216 kb on - strand, within CSW01_05445 at 1135.221 kb on - strand, within CSW01_05445 at 1135.235 kb on - strand, within CSW01_05445 at 1135.294 kb on - strand, within CSW01_05445 at 1135.312 kb on + strand, within CSW01_05445 at 1135.414 kb on - strand, within CSW01_05445 at 1135.450 kb on + strand, within CSW01_05445 at 1135.616 kb on + strand, within CSW01_05445 at 1135.624 kb on - strand, within CSW01_05445 at 1135.624 kb on - strand, within CSW01_05445 at 1135.624 kb on - strand, within CSW01_05445 at 1135.624 kb on - strand, within CSW01_05445 at 1135.649 kb on - strand, within CSW01_05445 at 1135.734 kb on - strand, within CSW01_05445 at 1135.791 kb on - strand, within CSW01_05445 at 1135.791 kb on - strand, within CSW01_05445 at 1135.857 kb on + strand, within CSW01_05445 at 1135.857 kb on + strand, within CSW01_05445 at 1135.940 kb on - strand at 1135.968 kb on - strand at 1135.987 kb on + strand at 1136.004 kb on + strand at 1136.149 kb on + strand, within CSW01_05450 at 1136.154 kb on + strand, within CSW01_05450 at 1136.157 kb on - strand, within CSW01_05450 at 1136.193 kb on + strand, within CSW01_05450 at 1136.201 kb on - strand, within CSW01_05450 at 1136.201 kb on - strand, within CSW01_05450 at 1136.282 kb on + strand, within CSW01_05450 at 1136.335 kb on + strand, within CSW01_05450 at 1136.398 kb on - strand, within CSW01_05450 at 1136.470 kb on - strand, within CSW01_05450 at 1136.474 kb on + strand, within CSW01_05450 at 1136.477 kb on - strand, within CSW01_05450 at 1136.482 kb on + strand, within CSW01_05450 at 1136.482 kb on + strand, within CSW01_05450 at 1136.621 kb on + strand at 1136.626 kb on + strand at 1136.629 kb on - strand at 1136.647 kb on - strand at 1136.716 kb on - strand, within CSW01_05455 at 1136.807 kb on - strand, within CSW01_05455 at 1136.819 kb on - strand, within CSW01_05455 at 1136.866 kb on - strand, within CSW01_05455 at 1136.910 kb on - strand, within CSW01_05455 at 1136.910 kb on - strand, within CSW01_05455 at 1136.913 kb on + strand, within CSW01_05455 at 1137.193 kb on - strand, within CSW01_05455
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 1,135,086 - -0.2 1,135,129 + -1.1 1,135,129 + -1.0 1,135,129 + -2.6 1,135,129 + -2.7 1,135,187 + CSW01_05445 0.15 +1.0 1,135,216 - CSW01_05445 0.18 -1.1 1,135,221 - CSW01_05445 0.18 +0.9 1,135,235 - CSW01_05445 0.20 +2.0 1,135,294 - CSW01_05445 0.26 -1.2 1,135,312 + CSW01_05445 0.27 +0.3 1,135,414 - CSW01_05445 0.38 +1.1 1,135,450 + CSW01_05445 0.41 -0.2 1,135,616 + CSW01_05445 0.58 +1.2 1,135,624 - CSW01_05445 0.59 -0.6 1,135,624 - CSW01_05445 0.59 +0.3 1,135,624 - CSW01_05445 0.59 -0.0 1,135,624 - CSW01_05445 0.59 -2.1 1,135,649 - CSW01_05445 0.61 -0.8 1,135,734 - CSW01_05445 0.70 +2.6 1,135,791 - CSW01_05445 0.75 +0.2 1,135,791 - CSW01_05445 0.75 +1.4 1,135,857 + CSW01_05445 0.82 -3.9 1,135,857 + CSW01_05445 0.82 -3.7 1,135,940 - +0.6 1,135,968 - +0.9 1,135,987 + +0.6 1,136,004 + -1.5 1,136,149 + CSW01_05450 0.19 -1.7 1,136,154 + CSW01_05450 0.20 +0.6 1,136,157 - CSW01_05450 0.21 -2.6 1,136,193 + CSW01_05450 0.28 -1.2 1,136,201 - CSW01_05450 0.30 -1.3 1,136,201 - CSW01_05450 0.30 -1.4 1,136,282 + CSW01_05450 0.46 -0.6 1,136,335 + CSW01_05450 0.57 -3.6 1,136,398 - CSW01_05450 0.69 -0.8 1,136,470 - CSW01_05450 0.84 +1.0 1,136,474 + CSW01_05450 0.85 +1.2 1,136,477 - CSW01_05450 0.85 +0.4 1,136,482 + CSW01_05450 0.86 -1.9 1,136,482 + CSW01_05450 0.86 -0.2 1,136,621 + +0.6 1,136,626 + +0.8 1,136,629 - +0.3 1,136,647 - +1.1 1,136,716 - CSW01_05455 0.10 -1.8 1,136,807 - CSW01_05455 0.18 +0.2 1,136,819 - CSW01_05455 0.19 +1.0 1,136,866 - CSW01_05455 0.22 -2.8 1,136,910 - CSW01_05455 0.26 -0.1 1,136,910 - CSW01_05455 0.26 +0.7 1,136,913 + CSW01_05455 0.26 +0.5 1,137,193 - CSW01_05455 0.49 +0.7
Or see this region's nucleotide sequence