Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04980

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04970 and CSW01_04975 are separated by 60 nucleotidesCSW01_04975 and CSW01_04980 are separated by 43 nucleotidesCSW01_04980 and CSW01_04985 are separated by 7 nucleotides CSW01_04970: CSW01_04970 - hypothetical protein, at 1,037,757 to 1,038,572 _04970 CSW01_04975: CSW01_04975 - transcriptional regulator, at 1,038,633 to 1,039,052 _04975 CSW01_04980: CSW01_04980 - NfeD family protein, at 1,039,096 to 1,039,545 _04980 CSW01_04985: CSW01_04985 - paraslipin, at 1,039,553 to 1,040,473 _04985 Position (kb) 1039 1040Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1038.113 kb on + strand, within CSW01_04970at 1038.113 kb on + strand, within CSW01_04970at 1038.113 kb on + strand, within CSW01_04970at 1038.113 kb on + strand, within CSW01_04970at 1038.118 kb on + strand, within CSW01_04970at 1038.118 kb on + strand, within CSW01_04970at 1038.121 kb on - strand, within CSW01_04970at 1038.126 kb on - strand, within CSW01_04970at 1038.126 kb on - strand, within CSW01_04970at 1038.136 kb on - strand, within CSW01_04970at 1038.145 kb on + strand, within CSW01_04970at 1038.202 kb on + strand, within CSW01_04970at 1038.202 kb on + strand, within CSW01_04970at 1038.210 kb on - strand, within CSW01_04970at 1038.210 kb on - strand, within CSW01_04970at 1038.212 kb on + strand, within CSW01_04970at 1038.220 kb on - strand, within CSW01_04970at 1038.220 kb on - strand, within CSW01_04970at 1038.266 kb on - strand, within CSW01_04970at 1038.339 kb on + strand, within CSW01_04970at 1038.358 kb on + strand, within CSW01_04970at 1038.358 kb on + strand, within CSW01_04970at 1038.411 kb on - strand, within CSW01_04970at 1038.411 kb on - strand, within CSW01_04970at 1038.463 kb on + strand, within CSW01_04970at 1038.464 kb on + strand, within CSW01_04970at 1038.464 kb on + strand, within CSW01_04970at 1038.464 kb on + strand, within CSW01_04970at 1038.472 kb on - strand, within CSW01_04970at 1038.472 kb on - strand, within CSW01_04970at 1038.472 kb on - strand, within CSW01_04970at 1038.472 kb on - strand, within CSW01_04970at 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.594 kb on + strandat 1038.678 kb on - strand, within CSW01_04975at 1038.751 kb on - strand, within CSW01_04975at 1038.816 kb on - strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.829 kb on + strand, within CSW01_04975at 1038.854 kb on - strand, within CSW01_04975at 1038.870 kb on - strand, within CSW01_04975at 1038.983 kb on - strand, within CSW01_04975at 1038.983 kb on - strand, within CSW01_04975at 1039.015 kb on - strandat 1039.037 kb on + strandat 1039.167 kb on + strand, within CSW01_04980at 1039.184 kb on + strand, within CSW01_04980at 1039.184 kb on + strand, within CSW01_04980at 1039.184 kb on + strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.193 kb on + strand, within CSW01_04980at 1039.239 kb on - strand, within CSW01_04980at 1039.278 kb on + strand, within CSW01_04980at 1039.278 kb on + strand, within CSW01_04980at 1039.286 kb on - strand, within CSW01_04980at 1039.313 kb on + strand, within CSW01_04980at 1039.463 kb on + strand, within CSW01_04980at 1039.481 kb on - strand, within CSW01_04980at 1039.495 kb on + strand, within CSW01_04980at 1039.503 kb on - strandat 1039.555 kb on + strandat 1039.688 kb on + strand, within CSW01_04985at 1039.688 kb on + strand, within CSW01_04985at 1039.696 kb on - strand, within CSW01_04985at 1039.701 kb on - strand, within CSW01_04985at 1039.725 kb on + strand, within CSW01_04985at 1039.747 kb on + strand, within CSW01_04985at 1039.755 kb on - strand, within CSW01_04985at 1039.929 kb on + strand, within CSW01_04985at 1040.002 kb on + strand, within CSW01_04985at 1040.002 kb on + strand, within CSW01_04985at 1040.010 kb on - strand, within CSW01_04985at 1040.010 kb on - strand, within CSW01_04985at 1040.018 kb on - strand, within CSW01_04985at 1040.092 kb on + strand, within CSW01_04985at 1040.099 kb on + strand, within CSW01_04985at 1040.107 kb on - strand, within CSW01_04985at 1040.125 kb on + strand, within CSW01_04985at 1040.133 kb on - strand, within CSW01_04985at 1040.194 kb on + strand, within CSW01_04985at 1040.202 kb on - strand, within CSW01_04985at 1040.305 kb on + strand, within CSW01_04985at 1040.337 kb on - strand, within CSW01_04985at 1040.342 kb on - strand, within CSW01_04985at 1040.381 kb on - strand, within CSW01_04985at 1040.404 kb on + strandat 1040.503 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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1,038,113 + CSW01_04970 0.44 -0.5
1,038,113 + CSW01_04970 0.44 +0.2
1,038,113 + CSW01_04970 0.44 +1.1
1,038,113 + CSW01_04970 0.44 -0.7
1,038,118 + CSW01_04970 0.44 -0.3
1,038,118 + CSW01_04970 0.44 -1.1
1,038,121 - CSW01_04970 0.45 -3.7
1,038,126 - CSW01_04970 0.45 -1.4
1,038,126 - CSW01_04970 0.45 +2.0
1,038,136 - CSW01_04970 0.46 -0.0
1,038,145 + CSW01_04970 0.48 -1.8
1,038,202 + CSW01_04970 0.55 -2.9
1,038,202 + CSW01_04970 0.55 -4.3
1,038,210 - CSW01_04970 0.56 -2.5
1,038,210 - CSW01_04970 0.56 -0.2
1,038,212 + CSW01_04970 0.56 +0.7
1,038,220 - CSW01_04970 0.57 -1.0
1,038,220 - CSW01_04970 0.57 +0.5
1,038,266 - CSW01_04970 0.62 +1.1
1,038,339 + CSW01_04970 0.71 -0.0
1,038,358 + CSW01_04970 0.74 -0.3
1,038,358 + CSW01_04970 0.74 -1.4
1,038,411 - CSW01_04970 0.80 -1.5
1,038,411 - CSW01_04970 0.80 +0.9
1,038,463 + CSW01_04970 0.87 +0.5
1,038,464 + CSW01_04970 0.87 +1.5
1,038,464 + CSW01_04970 0.87 +0.9
1,038,464 + CSW01_04970 0.87 +1.4
1,038,472 - CSW01_04970 0.88 +2.7
1,038,472 - CSW01_04970 0.88 -0.7
1,038,472 - CSW01_04970 0.88 +0.7
1,038,472 - CSW01_04970 0.88 -0.3
1,038,587 + -2.6
1,038,587 + +1.0
1,038,587 + +0.1
1,038,587 + +0.6
1,038,587 + +1.8
1,038,594 + -0.8
1,038,678 - CSW01_04975 0.11 -0.2
1,038,751 - CSW01_04975 0.28 +2.6
1,038,816 - CSW01_04975 0.44 +0.6
1,038,818 + CSW01_04975 0.44 -0.2
1,038,818 + CSW01_04975 0.44 -3.9
1,038,818 + CSW01_04975 0.44 -2.1
1,038,818 + CSW01_04975 0.44 +1.3
1,038,818 + CSW01_04975 0.44 +0.4
1,038,818 + CSW01_04975 0.44 -0.4
1,038,818 + CSW01_04975 0.44 +0.1
1,038,818 + CSW01_04975 0.44 +0.9
1,038,818 + CSW01_04975 0.44 +0.7
1,038,826 - CSW01_04975 0.46 -1.6
1,038,826 - CSW01_04975 0.46 -3.2
1,038,826 - CSW01_04975 0.46 +0.3
1,038,826 - CSW01_04975 0.46 +0.7
1,038,826 - CSW01_04975 0.46 -1.8
1,038,826 - CSW01_04975 0.46 -1.9
1,038,826 - CSW01_04975 0.46 +0.4
1,038,826 - CSW01_04975 0.46 +0.5
1,038,826 - CSW01_04975 0.46 +1.1
1,038,826 - CSW01_04975 0.46 -0.9
1,038,826 - CSW01_04975 0.46 +0.4
1,038,826 - CSW01_04975 0.46 +1.1
1,038,829 + CSW01_04975 0.47 +2.0
1,038,854 - CSW01_04975 0.53 +0.3
1,038,870 - CSW01_04975 0.56 -2.2
1,038,983 - CSW01_04975 0.83 -1.6
1,038,983 - CSW01_04975 0.83 -3.6
1,039,015 - +0.2
1,039,037 + -0.4
1,039,167 + CSW01_04980 0.16 -0.5
1,039,184 + CSW01_04980 0.20 -3.2
1,039,184 + CSW01_04980 0.20 +0.5
1,039,184 + CSW01_04980 0.20 +0.4
1,039,192 - CSW01_04980 0.21 -1.1
1,039,192 - CSW01_04980 0.21 +0.1
1,039,192 - CSW01_04980 0.21 +1.2
1,039,192 - CSW01_04980 0.21 -3.9
1,039,192 - CSW01_04980 0.21 +0.6
1,039,192 - CSW01_04980 0.21 +2.3
1,039,192 - CSW01_04980 0.21 -2.6
1,039,192 - CSW01_04980 0.21 -1.0
1,039,192 - CSW01_04980 0.21 +1.6
1,039,192 - CSW01_04980 0.21 -1.4
1,039,192 - CSW01_04980 0.21 -2.2
1,039,193 + CSW01_04980 0.22 -2.9
1,039,239 - CSW01_04980 0.32 +0.0
1,039,278 + CSW01_04980 0.40 -1.5
1,039,278 + CSW01_04980 0.40 -0.5
1,039,286 - CSW01_04980 0.42 -0.9
1,039,313 + CSW01_04980 0.48 +0.3
1,039,463 + CSW01_04980 0.82 +0.2
1,039,481 - CSW01_04980 0.86 +2.0
1,039,495 + CSW01_04980 0.89 -0.2
1,039,503 - +0.3
1,039,555 + +0.7
1,039,688 + CSW01_04985 0.15 +0.2
1,039,688 + CSW01_04985 0.15 +1.5
1,039,696 - CSW01_04985 0.16 +2.6
1,039,701 - CSW01_04985 0.16 -1.9
1,039,725 + CSW01_04985 0.19 +0.3
1,039,747 + CSW01_04985 0.21 +0.2
1,039,755 - CSW01_04985 0.22 +1.2
1,039,929 + CSW01_04985 0.41 +0.1
1,040,002 + CSW01_04985 0.49 +0.3
1,040,002 + CSW01_04985 0.49 +2.1
1,040,010 - CSW01_04985 0.50 +0.4
1,040,010 - CSW01_04985 0.50 -0.3
1,040,018 - CSW01_04985 0.50 +0.9
1,040,092 + CSW01_04985 0.59 -0.2
1,040,099 + CSW01_04985 0.59 +1.2
1,040,107 - CSW01_04985 0.60 -2.4
1,040,125 + CSW01_04985 0.62 +0.4
1,040,133 - CSW01_04985 0.63 -2.8
1,040,194 + CSW01_04985 0.70 -0.9
1,040,202 - CSW01_04985 0.70 +1.1
1,040,305 + CSW01_04985 0.82 -0.6
1,040,337 - CSW01_04985 0.85 +1.3
1,040,342 - CSW01_04985 0.86 +0.4
1,040,381 - CSW01_04985 0.90 -0.7
1,040,404 + -1.6
1,040,503 - +0.4

Or see this region's nucleotide sequence