Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04730

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04725 and CSW01_04730 overlap by 4 nucleotidesCSW01_04730 and CSW01_04735 are separated by 10 nucleotidesCSW01_04735 and CSW01_04740 overlap by 1 nucleotides CSW01_04725: CSW01_04725 - sugar transporter, at 982,268 to 983,677 _04725 CSW01_04730: CSW01_04730 - hypothetical protein, at 983,674 to 984,894 _04730 CSW01_04735: CSW01_04735 - serine acetyltransferase, at 984,905 to 985,336 _04735 CSW01_04740: CSW01_04740 - capsule biosynthesis protein CapK, at 985,336 to 986,676 _04740 Position (kb) 983 984 985Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 982.722 kb on + strand, within CSW01_04725at 982.723 kb on - strand, within CSW01_04725at 982.730 kb on - strand, within CSW01_04725at 982.738 kb on + strand, within CSW01_04725at 982.778 kb on + strand, within CSW01_04725at 982.778 kb on + strand, within CSW01_04725at 982.786 kb on - strand, within CSW01_04725at 982.786 kb on - strand, within CSW01_04725at 982.786 kb on - strand, within CSW01_04725at 982.810 kb on + strand, within CSW01_04725at 982.818 kb on - strand, within CSW01_04725at 982.846 kb on + strand, within CSW01_04725at 982.846 kb on + strand, within CSW01_04725at 982.854 kb on - strand, within CSW01_04725at 982.854 kb on - strand, within CSW01_04725at 982.898 kb on + strand, within CSW01_04725at 982.906 kb on + strand, within CSW01_04725at 982.981 kb on - strand, within CSW01_04725at 983.032 kb on + strand, within CSW01_04725at 983.032 kb on + strand, within CSW01_04725at 983.032 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.094 kb on - strand, within CSW01_04725at 983.094 kb on - strand, within CSW01_04725at 983.094 kb on - strand, within CSW01_04725at 983.181 kb on - strand, within CSW01_04725at 983.181 kb on - strand, within CSW01_04725at 983.188 kb on + strand, within CSW01_04725at 983.212 kb on + strand, within CSW01_04725at 983.220 kb on - strand, within CSW01_04725at 983.220 kb on - strand, within CSW01_04725at 983.295 kb on + strand, within CSW01_04725at 983.305 kb on + strand, within CSW01_04725at 983.395 kb on - strand, within CSW01_04725at 983.395 kb on - strand, within CSW01_04725at 983.397 kb on + strand, within CSW01_04725at 983.405 kb on - strand, within CSW01_04725at 983.407 kb on - strand, within CSW01_04725at 983.446 kb on - strand, within CSW01_04725at 983.453 kb on + strand, within CSW01_04725at 983.458 kb on + strand, within CSW01_04725at 983.465 kb on - strand, within CSW01_04725at 983.468 kb on + strand, within CSW01_04725at 983.496 kb on + strand, within CSW01_04725at 983.506 kb on + strand, within CSW01_04725at 983.506 kb on + strand, within CSW01_04725at 983.506 kb on + strand, within CSW01_04725at 983.506 kb on + strand, within CSW01_04725at 983.506 kb on + strand, within CSW01_04725at 983.514 kb on - strand, within CSW01_04725at 983.539 kb on - strandat 983.567 kb on + strandat 983.567 kb on + strandat 983.575 kb on - strandat 983.575 kb on - strandat 983.575 kb on - strandat 983.588 kb on + strandat 983.612 kb on + strandat 983.668 kb on + strandat 983.769 kb on - strandat 983.814 kb on - strand, within CSW01_04730at 983.849 kb on - strand, within CSW01_04730at 983.852 kb on + strand, within CSW01_04730at 983.860 kb on - strand, within CSW01_04730at 983.879 kb on + strand, within CSW01_04730at 983.889 kb on + strand, within CSW01_04730at 983.964 kb on + strand, within CSW01_04730at 983.973 kb on + strand, within CSW01_04730at 983.973 kb on + strand, within CSW01_04730at 983.981 kb on - strand, within CSW01_04730at 984.022 kb on + strand, within CSW01_04730at 984.022 kb on + strand, within CSW01_04730at 984.022 kb on + strand, within CSW01_04730at 984.030 kb on - strand, within CSW01_04730at 984.043 kb on + strand, within CSW01_04730at 984.119 kb on - strand, within CSW01_04730at 984.126 kb on + strand, within CSW01_04730at 984.128 kb on + strand, within CSW01_04730at 984.128 kb on + strand, within CSW01_04730at 984.128 kb on + strand, within CSW01_04730at 984.134 kb on - strand, within CSW01_04730at 984.134 kb on - strand, within CSW01_04730at 984.136 kb on - strand, within CSW01_04730at 984.136 kb on - strand, within CSW01_04730at 984.190 kb on + strand, within CSW01_04730at 984.190 kb on + strand, within CSW01_04730at 984.190 kb on + strand, within CSW01_04730at 984.251 kb on + strand, within CSW01_04730at 984.289 kb on - strand, within CSW01_04730at 984.289 kb on - strand, within CSW01_04730at 984.321 kb on - strand, within CSW01_04730at 984.415 kb on + strand, within CSW01_04730at 984.470 kb on + strand, within CSW01_04730at 984.471 kb on + strand, within CSW01_04730at 984.472 kb on + strand, within CSW01_04730at 984.478 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.490 kb on - strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.563 kb on - strand, within CSW01_04730at 984.570 kb on - strand, within CSW01_04730at 984.576 kb on + strand, within CSW01_04730at 984.576 kb on + strand, within CSW01_04730at 984.666 kb on - strand, within CSW01_04730at 984.666 kb on - strand, within CSW01_04730at 984.689 kb on + strand, within CSW01_04730at 984.689 kb on + strand, within CSW01_04730at 984.689 kb on + strand, within CSW01_04730at 984.689 kb on + strand, within CSW01_04730at 984.697 kb on - strand, within CSW01_04730at 984.697 kb on - strand, within CSW01_04730at 984.704 kb on + strand, within CSW01_04730at 984.710 kb on - strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.767 kb on + strand, within CSW01_04730at 984.775 kb on - strandat 984.786 kb on + strandat 984.812 kb on + strandat 984.812 kb on + strandat 984.887 kb on + strandat 984.943 kb on + strandat 984.965 kb on - strand, within CSW01_04735at 984.975 kb on - strand, within CSW01_04735at 984.994 kb on + strand, within CSW01_04735at 985.032 kb on + strand, within CSW01_04735at 985.037 kb on + strand, within CSW01_04735at 985.037 kb on + strand, within CSW01_04735at 985.115 kb on - strand, within CSW01_04735at 985.121 kb on + strand, within CSW01_04735at 985.154 kb on - strand, within CSW01_04735at 985.156 kb on - strand, within CSW01_04735at 985.156 kb on - strand, within CSW01_04735at 985.194 kb on - strand, within CSW01_04735at 985.223 kb on + strand, within CSW01_04735at 985.252 kb on - strand, within CSW01_04735at 985.300 kb on + strandat 985.572 kb on + strand, within CSW01_04740at 985.572 kb on + strand, within CSW01_04740at 985.572 kb on + strand, within CSW01_04740at 985.702 kb on + strand, within CSW01_04740at 985.702 kb on + strand, within CSW01_04740at 985.789 kb on + strand, within CSW01_04740at 985.791 kb on + strand, within CSW01_04740at 985.799 kb on - strand, within CSW01_04740at 985.809 kb on - strand, within CSW01_04740at 985.814 kb on + strand, within CSW01_04740at 985.814 kb on + strand, within CSW01_04740at 985.863 kb on + strand, within CSW01_04740at 985.870 kb on - strand, within CSW01_04740at 985.878 kb on + strand, within CSW01_04740at 985.885 kb on + strand, within CSW01_04740

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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982,722 + CSW01_04725 0.32 +1.1
982,723 - CSW01_04725 0.32 -1.3
982,730 - CSW01_04725 0.33 +0.8
982,738 + CSW01_04725 0.33 +0.5
982,778 + CSW01_04725 0.36 +0.5
982,778 + CSW01_04725 0.36 +0.4
982,786 - CSW01_04725 0.37 -0.7
982,786 - CSW01_04725 0.37 -1.1
982,786 - CSW01_04725 0.37 +1.3
982,810 + CSW01_04725 0.38 +2.1
982,818 - CSW01_04725 0.39 -4.2
982,846 + CSW01_04725 0.41 -1.4
982,846 + CSW01_04725 0.41 +0.2
982,854 - CSW01_04725 0.42 +0.3
982,854 - CSW01_04725 0.42 +1.0
982,898 + CSW01_04725 0.45 -0.1
982,906 + CSW01_04725 0.45 -1.2
982,981 - CSW01_04725 0.51 -4.4
983,032 + CSW01_04725 0.54 -0.7
983,032 + CSW01_04725 0.54 +0.9
983,032 + CSW01_04725 0.54 +2.8
983,086 + CSW01_04725 0.58 -0.5
983,086 + CSW01_04725 0.58 -1.3
983,086 + CSW01_04725 0.58 +1.3
983,086 + CSW01_04725 0.58 +1.4
983,094 - CSW01_04725 0.59 +0.9
983,094 - CSW01_04725 0.59 +0.2
983,094 - CSW01_04725 0.59 -1.7
983,181 - CSW01_04725 0.65 -3.3
983,181 - CSW01_04725 0.65 +0.3
983,188 + CSW01_04725 0.65 +0.2
983,212 + CSW01_04725 0.67 +1.9
983,220 - CSW01_04725 0.68 -1.0
983,220 - CSW01_04725 0.68 +1.4
983,295 + CSW01_04725 0.73 -0.2
983,305 + CSW01_04725 0.74 +1.2
983,395 - CSW01_04725 0.80 +0.1
983,395 - CSW01_04725 0.80 +0.7
983,397 + CSW01_04725 0.80 +1.1
983,405 - CSW01_04725 0.81 -2.0
983,407 - CSW01_04725 0.81 +0.8
983,446 - CSW01_04725 0.84 -0.6
983,453 + CSW01_04725 0.84 +0.0
983,458 + CSW01_04725 0.84 -0.9
983,465 - CSW01_04725 0.85 +1.1
983,468 + CSW01_04725 0.85 +0.1
983,496 + CSW01_04725 0.87 +0.4
983,506 + CSW01_04725 0.88 -1.5
983,506 + CSW01_04725 0.88 -0.6
983,506 + CSW01_04725 0.88 +1.0
983,506 + CSW01_04725 0.88 +1.2
983,506 + CSW01_04725 0.88 -0.5
983,514 - CSW01_04725 0.88 -1.2
983,539 - +0.2
983,567 + +0.7
983,567 + +1.0
983,575 - +1.0
983,575 - -2.4
983,575 - -3.8
983,588 + -1.9
983,612 + +0.3
983,668 + +0.4
983,769 - +0.7
983,814 - CSW01_04730 0.11 -0.2
983,849 - CSW01_04730 0.14 +0.5
983,852 + CSW01_04730 0.15 -1.5
983,860 - CSW01_04730 0.15 -0.3
983,879 + CSW01_04730 0.17 +0.7
983,889 + CSW01_04730 0.18 +0.9
983,964 + CSW01_04730 0.24 +1.7
983,973 + CSW01_04730 0.24 +0.6
983,973 + CSW01_04730 0.24 +1.6
983,981 - CSW01_04730 0.25 -3.6
984,022 + CSW01_04730 0.29 -0.3
984,022 + CSW01_04730 0.29 -3.1
984,022 + CSW01_04730 0.29 +0.7
984,030 - CSW01_04730 0.29 -2.6
984,043 + CSW01_04730 0.30 +0.1
984,119 - CSW01_04730 0.36 +0.8
984,126 + CSW01_04730 0.37 -2.3
984,128 + CSW01_04730 0.37 -3.1
984,128 + CSW01_04730 0.37 -1.5
984,128 + CSW01_04730 0.37 +1.0
984,134 - CSW01_04730 0.38 -0.5
984,134 - CSW01_04730 0.38 +1.1
984,136 - CSW01_04730 0.38 +0.8
984,136 - CSW01_04730 0.38 -0.5
984,190 + CSW01_04730 0.42 +0.8
984,190 + CSW01_04730 0.42 -0.0
984,190 + CSW01_04730 0.42 +1.1
984,251 + CSW01_04730 0.47 +1.4
984,289 - CSW01_04730 0.50 -1.7
984,289 - CSW01_04730 0.50 -0.1
984,321 - CSW01_04730 0.53 -2.6
984,415 + CSW01_04730 0.61 -2.9
984,470 + CSW01_04730 0.65 -2.7
984,471 + CSW01_04730 0.65 +1.2
984,472 + CSW01_04730 0.65 +1.5
984,478 - CSW01_04730 0.66 +1.1
984,479 - CSW01_04730 0.66 -0.4
984,479 - CSW01_04730 0.66 -1.2
984,479 - CSW01_04730 0.66 +0.9
984,479 - CSW01_04730 0.66 +0.7
984,490 - CSW01_04730 0.67 +1.2
984,555 + CSW01_04730 0.72 -0.1
984,555 + CSW01_04730 0.72 +1.3
984,555 + CSW01_04730 0.72 +0.5
984,555 + CSW01_04730 0.72 -0.1
984,563 - CSW01_04730 0.73 +0.9
984,570 - CSW01_04730 0.73 -1.2
984,576 + CSW01_04730 0.74 -1.1
984,576 + CSW01_04730 0.74 -1.4
984,666 - CSW01_04730 0.81 +0.1
984,666 - CSW01_04730 0.81 +0.8
984,689 + CSW01_04730 0.83 -2.1
984,689 + CSW01_04730 0.83 +0.1
984,689 + CSW01_04730 0.83 -4.1
984,689 + CSW01_04730 0.83 +0.9
984,697 - CSW01_04730 0.84 -0.0
984,697 - CSW01_04730 0.84 +0.1
984,704 + CSW01_04730 0.84 +0.7
984,710 - CSW01_04730 0.85 +1.2
984,712 + CSW01_04730 0.85 -0.3
984,712 + CSW01_04730 0.85 +0.1
984,712 + CSW01_04730 0.85 +1.9
984,712 + CSW01_04730 0.85 -1.9
984,712 + CSW01_04730 0.85 -2.2
984,712 + CSW01_04730 0.85 +1.5
984,712 + CSW01_04730 0.85 -0.4
984,712 + CSW01_04730 0.85 +1.8
984,720 - CSW01_04730 0.86 -0.2
984,720 - CSW01_04730 0.86 -0.3
984,720 - CSW01_04730 0.86 -0.1
984,720 - CSW01_04730 0.86 +1.4
984,720 - CSW01_04730 0.86 +0.2
984,720 - CSW01_04730 0.86 -3.7
984,767 + CSW01_04730 0.90 -4.2
984,775 - +0.9
984,786 + -0.5
984,812 + +0.8
984,812 + -1.7
984,887 + +1.7
984,943 + +1.2
984,965 - CSW01_04735 0.14 -0.5
984,975 - CSW01_04735 0.16 -0.2
984,994 + CSW01_04735 0.21 -2.5
985,032 + CSW01_04735 0.29 +0.2
985,037 + CSW01_04735 0.31 -1.6
985,037 + CSW01_04735 0.31 +1.0
985,115 - CSW01_04735 0.49 -3.1
985,121 + CSW01_04735 0.50 +0.4
985,154 - CSW01_04735 0.58 +0.3
985,156 - CSW01_04735 0.58 -1.0
985,156 - CSW01_04735 0.58 -0.5
985,194 - CSW01_04735 0.67 -0.1
985,223 + CSW01_04735 0.74 -0.5
985,252 - CSW01_04735 0.80 +1.0
985,300 + -1.2
985,572 + CSW01_04740 0.18 -0.5
985,572 + CSW01_04740 0.18 +0.4
985,572 + CSW01_04740 0.18 +1.2
985,702 + CSW01_04740 0.27 +0.1
985,702 + CSW01_04740 0.27 +0.4
985,789 + CSW01_04740 0.34 +0.3
985,791 + CSW01_04740 0.34 -0.2
985,799 - CSW01_04740 0.35 -1.5
985,809 - CSW01_04740 0.35 +0.1
985,814 + CSW01_04740 0.36 -1.9
985,814 + CSW01_04740 0.36 -2.9
985,863 + CSW01_04740 0.39 +2.3
985,870 - CSW01_04740 0.40 +1.5
985,878 + CSW01_04740 0.40 +0.5
985,885 + CSW01_04740 0.41 +0.8

Or see this region's nucleotide sequence