Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04445

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04435 and CSW01_04440 overlap by 11 nucleotidesCSW01_04440 and CSW01_04445 are separated by 36 nucleotidesCSW01_04445 and CSW01_04450 overlap by 8 nucleotides CSW01_04435: CSW01_04435 - hypothetical protein, at 924,079 to 925,320 _04435 CSW01_04440: CSW01_04440 - type IV pilin, at 925,310 to 925,723 _04440 CSW01_04445: CSW01_04445 - hypothetical protein, at 925,760 to 926,128 _04445 CSW01_04450: CSW01_04450 - aminobenzoyl-glutamate transporter, at 926,121 to 927,680 _04450 Position (kb) 925 926 927Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 924.822 kb on + strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.830 kb on - strand, within CSW01_04435at 924.830 kb on - strand, within CSW01_04435at 924.830 kb on - strand, within CSW01_04435at 924.877 kb on + strand, within CSW01_04435at 924.903 kb on - strand, within CSW01_04435at 924.910 kb on - strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.022 kb on - strand, within CSW01_04435at 925.022 kb on - strand, within CSW01_04435at 925.022 kb on - strand, within CSW01_04435at 925.044 kb on + strand, within CSW01_04435at 925.049 kb on + strand, within CSW01_04435at 925.057 kb on - strand, within CSW01_04435at 925.060 kb on + strand, within CSW01_04435at 925.060 kb on + strand, within CSW01_04435at 925.060 kb on + strand, within CSW01_04435at 925.068 kb on - strand, within CSW01_04435at 925.068 kb on - strand, within CSW01_04435at 925.068 kb on - strand, within CSW01_04435at 925.073 kb on - strand, within CSW01_04435at 925.076 kb on + strand, within CSW01_04435at 925.106 kb on + strand, within CSW01_04435at 925.128 kb on + strand, within CSW01_04435at 925.128 kb on + strand, within CSW01_04435at 925.128 kb on + strand, within CSW01_04435at 925.175 kb on + strand, within CSW01_04435at 925.183 kb on - strand, within CSW01_04435at 925.183 kb on - strand, within CSW01_04435at 925.183 kb on - strand, within CSW01_04435at 925.185 kb on + strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.196 kb on + strandat 925.196 kb on + strandat 925.196 kb on + strandat 925.201 kb on + strandat 925.204 kb on - strandat 925.204 kb on - strandat 925.204 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.304 kb on + strandat 925.336 kb on - strandat 925.336 kb on - strandat 925.356 kb on + strand, within CSW01_04440at 925.361 kb on + strand, within CSW01_04440at 925.364 kb on - strand, within CSW01_04440at 925.364 kb on - strand, within CSW01_04440at 925.366 kb on + strand, within CSW01_04440at 925.371 kb on + strand, within CSW01_04440at 925.374 kb on - strand, within CSW01_04440at 925.379 kb on - strand, within CSW01_04440at 925.379 kb on - strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.448 kb on + strand, within CSW01_04440at 925.448 kb on - strand, within CSW01_04440at 925.456 kb on - strand, within CSW01_04440at 925.488 kb on - strand, within CSW01_04440at 925.506 kb on - strand, within CSW01_04440at 925.572 kb on - strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.590 kb on + strand, within CSW01_04440at 925.593 kb on - strand, within CSW01_04440at 925.593 kb on - strand, within CSW01_04440at 925.598 kb on - strand, within CSW01_04440at 925.599 kb on - strand, within CSW01_04440at 925.622 kb on + strand, within CSW01_04440at 925.628 kb on + strand, within CSW01_04440at 925.673 kb on - strand, within CSW01_04440at 925.698 kb on + strandat 925.706 kb on - strandat 925.706 kb on - strandat 925.712 kb on + strandat 925.779 kb on + strandat 925.826 kb on + strand, within CSW01_04445at 925.844 kb on - strand, within CSW01_04445at 925.964 kb on + strand, within CSW01_04445at 926.080 kb on + strand, within CSW01_04445at 926.086 kb on + strand, within CSW01_04445at 926.094 kb on - strandat 926.276 kb on - strandat 926.434 kb on + strand, within CSW01_04450at 926.437 kb on - strand, within CSW01_04450at 926.442 kb on - strand, within CSW01_04450at 926.442 kb on - strand, within CSW01_04450at 926.442 kb on - strand, within CSW01_04450at 926.452 kb on + strand, within CSW01_04450at 926.452 kb on + strand, within CSW01_04450at 926.467 kb on + strand, within CSW01_04450at 926.475 kb on - strand, within CSW01_04450at 926.475 kb on - strand, within CSW01_04450at 926.486 kb on + strand, within CSW01_04450at 926.533 kb on - strand, within CSW01_04450at 926.549 kb on + strand, within CSW01_04450at 926.559 kb on - strand, within CSW01_04450at 926.616 kb on - strand, within CSW01_04450at 926.756 kb on + strand, within CSW01_04450at 926.774 kb on + strand, within CSW01_04450at 926.826 kb on - strand, within CSW01_04450at 926.905 kb on + strand, within CSW01_04450at 926.913 kb on - strand, within CSW01_04450at 927.008 kb on + strand, within CSW01_04450at 927.102 kb on + strand, within CSW01_04450at 927.102 kb on + strand, within CSW01_04450at 927.102 kb on + strand, within CSW01_04450at 927.110 kb on - strand, within CSW01_04450at 927.110 kb on - strand, within CSW01_04450at 927.110 kb on - strand, within CSW01_04450

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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924,822 + CSW01_04435 0.60 -0.4
924,822 + CSW01_04435 0.60 -0.4
924,822 + CSW01_04435 0.60 +1.6
924,822 + CSW01_04435 0.60 +0.0
924,830 - CSW01_04435 0.60 -0.4
924,830 - CSW01_04435 0.60 -0.5
924,830 - CSW01_04435 0.60 +0.2
924,877 + CSW01_04435 0.64 -0.8
924,903 - CSW01_04435 0.66 -3.3
924,910 - CSW01_04435 0.67 +0.8
925,014 + CSW01_04435 0.75 +0.7
925,014 + CSW01_04435 0.75 -0.7
925,014 + CSW01_04435 0.75 -0.2
925,014 + CSW01_04435 0.75 -3.0
925,014 + CSW01_04435 0.75 -3.3
925,014 + CSW01_04435 0.75 +0.6
925,014 + CSW01_04435 0.75 -0.2
925,022 - CSW01_04435 0.76 +1.2
925,022 - CSW01_04435 0.76 -0.6
925,022 - CSW01_04435 0.76 -1.3
925,044 + CSW01_04435 0.78 +1.1
925,049 + CSW01_04435 0.78 -0.2
925,057 - CSW01_04435 0.79 -0.0
925,060 + CSW01_04435 0.79 +0.2
925,060 + CSW01_04435 0.79 -1.2
925,060 + CSW01_04435 0.79 -1.9
925,068 - CSW01_04435 0.80 -0.9
925,068 - CSW01_04435 0.80 -0.6
925,068 - CSW01_04435 0.80 +1.0
925,073 - CSW01_04435 0.80 +0.1
925,076 + CSW01_04435 0.80 -0.3
925,106 + CSW01_04435 0.83 +0.0
925,128 + CSW01_04435 0.84 +0.3
925,128 + CSW01_04435 0.84 -0.0
925,128 + CSW01_04435 0.84 +0.6
925,175 + CSW01_04435 0.88 -0.1
925,183 - CSW01_04435 0.89 -2.8
925,183 - CSW01_04435 0.89 -0.2
925,183 - CSW01_04435 0.89 +0.5
925,185 + CSW01_04435 0.89 -4.8
925,194 - CSW01_04435 0.90 +0.4
925,194 - CSW01_04435 0.90 +0.8
925,194 - CSW01_04435 0.90 +1.3
925,194 - CSW01_04435 0.90 +1.4
925,194 - CSW01_04435 0.90 +0.2
925,194 - CSW01_04435 0.90 +1.0
925,194 - CSW01_04435 0.90 -1.9
925,196 + -0.8
925,196 + -2.0
925,196 + +1.5
925,201 + +0.9
925,204 - -1.2
925,204 - +0.4
925,204 - +1.5
925,209 - +0.9
925,209 - -3.0
925,209 - -2.7
925,209 - -4.2
925,209 - -0.4
925,304 + -0.1
925,336 - +0.7
925,336 - -1.3
925,356 + CSW01_04440 0.11 -2.2
925,361 + CSW01_04440 0.12 -1.1
925,364 - CSW01_04440 0.13 +0.4
925,364 - CSW01_04440 0.13 +0.2
925,366 + CSW01_04440 0.14 +2.0
925,371 + CSW01_04440 0.15 +0.1
925,374 - CSW01_04440 0.15 -2.3
925,379 - CSW01_04440 0.17 +0.4
925,379 - CSW01_04440 0.17 +1.0
925,440 + CSW01_04440 0.31 -1.5
925,440 + CSW01_04440 0.31 +0.2
925,440 + CSW01_04440 0.31 +0.9
925,440 + CSW01_04440 0.31 +2.1
925,440 + CSW01_04440 0.31 -2.4
925,448 + CSW01_04440 0.33 -3.4
925,448 - CSW01_04440 0.33 -0.4
925,456 - CSW01_04440 0.35 -0.2
925,488 - CSW01_04440 0.43 +0.4
925,506 - CSW01_04440 0.47 +0.0
925,572 - CSW01_04440 0.63 +1.0
925,585 + CSW01_04440 0.66 +0.3
925,585 + CSW01_04440 0.66 -1.8
925,585 + CSW01_04440 0.66 -1.5
925,585 + CSW01_04440 0.66 -2.6
925,585 + CSW01_04440 0.66 +1.8
925,590 + CSW01_04440 0.68 +0.7
925,593 - CSW01_04440 0.68 -3.0
925,593 - CSW01_04440 0.68 -1.2
925,598 - CSW01_04440 0.70 +0.0
925,599 - CSW01_04440 0.70 +0.3
925,622 + CSW01_04440 0.75 -3.2
925,628 + CSW01_04440 0.77 -2.1
925,673 - CSW01_04440 0.88 -3.5
925,698 + +0.7
925,706 - +2.4
925,706 - +0.1
925,712 + +0.9
925,779 + +0.7
925,826 + CSW01_04445 0.18 -0.7
925,844 - CSW01_04445 0.23 +0.2
925,964 + CSW01_04445 0.55 +1.8
926,080 + CSW01_04445 0.87 -1.1
926,086 + CSW01_04445 0.88 +1.2
926,094 - +0.8
926,276 - -2.2
926,434 + CSW01_04450 0.20 -3.5
926,437 - CSW01_04450 0.20 -2.2
926,442 - CSW01_04450 0.21 +0.5
926,442 - CSW01_04450 0.21 -1.2
926,442 - CSW01_04450 0.21 +0.0
926,452 + CSW01_04450 0.21 -2.4
926,452 + CSW01_04450 0.21 -0.2
926,467 + CSW01_04450 0.22 +0.5
926,475 - CSW01_04450 0.23 -1.2
926,475 - CSW01_04450 0.23 +0.7
926,486 + CSW01_04450 0.23 -0.6
926,533 - CSW01_04450 0.26 -1.7
926,549 + CSW01_04450 0.27 -0.1
926,559 - CSW01_04450 0.28 +1.7
926,616 - CSW01_04450 0.32 -0.6
926,756 + CSW01_04450 0.41 -2.5
926,774 + CSW01_04450 0.42 +1.2
926,826 - CSW01_04450 0.45 -0.6
926,905 + CSW01_04450 0.50 +1.5
926,913 - CSW01_04450 0.51 -2.7
927,008 + CSW01_04450 0.57 +0.3
927,102 + CSW01_04450 0.63 +0.1
927,102 + CSW01_04450 0.63 +1.0
927,102 + CSW01_04450 0.63 +0.5
927,110 - CSW01_04450 0.63 -0.7
927,110 - CSW01_04450 0.63 -1.1
927,110 - CSW01_04450 0.63 -2.3

Or see this region's nucleotide sequence