Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04195 and CSW01_04200 are separated by 427 nucleotides CSW01_04200 and CSW01_04205 overlap by 16 nucleotides
CSW01_04195: CSW01_04195 - class I SAM-dependent methyltransferase, at 868,550 to 869,128
_04195
CSW01_04200: CSW01_04200 - XRE family transcriptional regulator, at 869,556 to 870,035
_04200
CSW01_04205: CSW01_04205 - type II toxin-antitoxin system HipA family toxin, at 870,020 to 871,390
_04205
Position (kb) 869
870
871 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 868.599 kb on + strand at 868.599 kb on + strand at 868.607 kb on - strand at 868.617 kb on + strand, within CSW01_04195 at 868.617 kb on + strand, within CSW01_04195 at 868.617 kb on + strand, within CSW01_04195 at 868.710 kb on + strand, within CSW01_04195 at 868.715 kb on + strand, within CSW01_04195 at 868.855 kb on - strand, within CSW01_04195 at 868.927 kb on - strand, within CSW01_04195 at 868.988 kb on + strand, within CSW01_04195 at 868.990 kb on - strand, within CSW01_04195 at 869.006 kb on + strand, within CSW01_04195 at 869.016 kb on + strand, within CSW01_04195 at 869.019 kb on - strand, within CSW01_04195 at 869.022 kb on - strand, within CSW01_04195 at 869.029 kb on - strand, within CSW01_04195 at 869.039 kb on - strand, within CSW01_04195 at 869.045 kb on - strand, within CSW01_04195 at 869.045 kb on - strand, within CSW01_04195 at 869.069 kb on + strand, within CSW01_04195 at 869.160 kb on + strand at 869.160 kb on + strand at 869.166 kb on + strand at 869.203 kb on + strand at 869.203 kb on + strand at 869.205 kb on + strand at 869.210 kb on - strand at 869.275 kb on + strand at 869.283 kb on - strand at 869.337 kb on - strand at 870.121 kb on + strand at 870.121 kb on + strand at 870.121 kb on + strand at 870.129 kb on - strand at 870.130 kb on - strand at 870.197 kb on + strand, within CSW01_04205 at 870.200 kb on - strand, within CSW01_04205 at 870.243 kb on - strand, within CSW01_04205 at 870.246 kb on - strand, within CSW01_04205 at 870.326 kb on - strand, within CSW01_04205 at 870.327 kb on - strand, within CSW01_04205 at 870.328 kb on - strand, within CSW01_04205 at 870.330 kb on + strand, within CSW01_04205 at 870.364 kb on + strand, within CSW01_04205 at 870.440 kb on + strand, within CSW01_04205 at 870.448 kb on - strand, within CSW01_04205 at 870.448 kb on - strand, within CSW01_04205 at 870.544 kb on - strand, within CSW01_04205 at 870.627 kb on - strand, within CSW01_04205 at 870.629 kb on + strand, within CSW01_04205 at 870.710 kb on - strand, within CSW01_04205 at 870.758 kb on + strand, within CSW01_04205 at 870.873 kb on - strand, within CSW01_04205 at 870.873 kb on - strand, within CSW01_04205 at 870.889 kb on + strand, within CSW01_04205 at 870.899 kb on + strand, within CSW01_04205 at 870.899 kb on + strand, within CSW01_04205 at 870.907 kb on - strand, within CSW01_04205 at 870.912 kb on + strand, within CSW01_04205 at 870.930 kb on - strand, within CSW01_04205 at 870.991 kb on - strand, within CSW01_04205 at 871.023 kb on - strand, within CSW01_04205
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 868,599 + +0.0 868,599 + -0.4 868,607 - -1.9 868,617 + CSW01_04195 0.12 +0.1 868,617 + CSW01_04195 0.12 -0.3 868,617 + CSW01_04195 0.12 -1.0 868,710 + CSW01_04195 0.28 +1.4 868,715 + CSW01_04195 0.28 +0.8 868,855 - CSW01_04195 0.53 -3.6 868,927 - CSW01_04195 0.65 -2.2 868,988 + CSW01_04195 0.76 +0.5 868,990 - CSW01_04195 0.76 -0.8 869,006 + CSW01_04195 0.79 +0.8 869,016 + CSW01_04195 0.80 -3.2 869,019 - CSW01_04195 0.81 +0.7 869,022 - CSW01_04195 0.82 -1.4 869,029 - CSW01_04195 0.83 -1.0 869,039 - CSW01_04195 0.84 -2.1 869,045 - CSW01_04195 0.85 +1.9 869,045 - CSW01_04195 0.85 -0.2 869,069 + CSW01_04195 0.90 -0.5 869,160 + -0.7 869,160 + -2.5 869,166 + -0.1 869,203 + +0.6 869,203 + -2.7 869,205 + -3.8 869,210 - -0.2 869,275 + -0.4 869,283 - +0.4 869,337 - +0.4 870,121 + -1.1 870,121 + +0.7 870,121 + -0.5 870,129 - +0.5 870,130 - -0.9 870,197 + CSW01_04205 0.13 -1.4 870,200 - CSW01_04205 0.13 -1.6 870,243 - CSW01_04205 0.16 +0.3 870,246 - CSW01_04205 0.16 -0.6 870,326 - CSW01_04205 0.22 -0.9 870,327 - CSW01_04205 0.22 -0.8 870,328 - CSW01_04205 0.22 -1.6 870,330 + CSW01_04205 0.23 -1.9 870,364 + CSW01_04205 0.25 +0.4 870,440 + CSW01_04205 0.31 +0.9 870,448 - CSW01_04205 0.31 -1.2 870,448 - CSW01_04205 0.31 +0.6 870,544 - CSW01_04205 0.38 -2.9 870,627 - CSW01_04205 0.44 -3.3 870,629 + CSW01_04205 0.44 -3.0 870,710 - CSW01_04205 0.50 +0.1 870,758 + CSW01_04205 0.54 -0.6 870,873 - CSW01_04205 0.62 -0.7 870,873 - CSW01_04205 0.62 +0.8 870,889 + CSW01_04205 0.63 -3.1 870,899 + CSW01_04205 0.64 -3.6 870,899 + CSW01_04205 0.64 -2.9 870,907 - CSW01_04205 0.65 -2.4 870,912 + CSW01_04205 0.65 +1.4 870,930 - CSW01_04205 0.66 -0.7 870,991 - CSW01_04205 0.71 +0.3 871,023 - CSW01_04205 0.73 -2.5
Or see this region's nucleotide sequence