Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04035

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04030 and CSW01_04035 overlap by 22 nucleotidesCSW01_04035 and CSW01_04040 are separated by 116 nucleotidesCSW01_04040 and CSW01_04045 overlap by 70 nucleotides CSW01_04030: CSW01_04030 - iron ABC transporter permease, at 832,191 to 833,243 _04030 CSW01_04035: CSW01_04035 - Fe(3+)-siderophore ABC transporter permease, at 833,222 to 834,298 _04035 CSW01_04040: CSW01_04040 - ABC transporter ATP-binding protein, at 834,415 to 835,254 _04040 CSW01_04045: CSW01_04045 - vibriobactin biosynthesis 4'-phosphopantetheinyl transferase VibD, at 835,185 to 835,970 _04045 Position (kb) 833 834 835Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 832.436 kb on - strand, within CSW01_04030at 832.454 kb on + strand, within CSW01_04030at 832.498 kb on - strand, within CSW01_04030at 832.537 kb on - strand, within CSW01_04030at 832.559 kb on - strand, within CSW01_04030at 832.566 kb on + strand, within CSW01_04030at 832.602 kb on - strand, within CSW01_04030at 832.602 kb on - strand, within CSW01_04030at 832.605 kb on + strand, within CSW01_04030at 832.628 kb on - strand, within CSW01_04030at 832.661 kb on - strand, within CSW01_04030at 832.667 kb on + strand, within CSW01_04030at 832.686 kb on + strand, within CSW01_04030at 832.686 kb on + strand, within CSW01_04030at 832.694 kb on - strand, within CSW01_04030at 832.694 kb on - strand, within CSW01_04030at 832.818 kb on - strand, within CSW01_04030at 832.886 kb on + strand, within CSW01_04030at 832.911 kb on - strand, within CSW01_04030at 832.928 kb on - strand, within CSW01_04030at 832.943 kb on + strand, within CSW01_04030at 832.943 kb on + strand, within CSW01_04030at 832.951 kb on - strand, within CSW01_04030at 832.951 kb on - strand, within CSW01_04030at 832.974 kb on + strand, within CSW01_04030at 832.993 kb on - strand, within CSW01_04030at 833.059 kb on + strand, within CSW01_04030at 833.059 kb on + strand, within CSW01_04030at 833.059 kb on + strand, within CSW01_04030at 833.067 kb on - strand, within CSW01_04030at 833.081 kb on + strand, within CSW01_04030at 833.086 kb on + strand, within CSW01_04030at 833.086 kb on + strand, within CSW01_04030at 833.089 kb on - strand, within CSW01_04030at 833.089 kb on - strand, within CSW01_04030at 833.096 kb on + strand, within CSW01_04030at 833.172 kb on - strandat 833.218 kb on - strandat 833.221 kb on + strandat 833.261 kb on + strandat 833.307 kb on + strandat 833.315 kb on - strandat 833.317 kb on + strandat 833.317 kb on + strandat 833.346 kb on + strand, within CSW01_04035at 833.354 kb on - strand, within CSW01_04035at 833.372 kb on + strand, within CSW01_04035at 833.462 kb on + strand, within CSW01_04035at 833.524 kb on - strand, within CSW01_04035at 833.524 kb on - strand, within CSW01_04035at 833.524 kb on - strand, within CSW01_04035at 833.553 kb on + strand, within CSW01_04035at 833.553 kb on + strand, within CSW01_04035at 833.578 kb on + strand, within CSW01_04035at 833.600 kb on - strand, within CSW01_04035at 833.615 kb on - strand, within CSW01_04035at 833.718 kb on + strand, within CSW01_04035at 833.750 kb on - strand, within CSW01_04035at 833.769 kb on + strand, within CSW01_04035at 833.769 kb on + strand, within CSW01_04035at 833.785 kb on + strand, within CSW01_04035at 833.813 kb on + strand, within CSW01_04035at 833.821 kb on - strand, within CSW01_04035at 833.821 kb on - strand, within CSW01_04035at 833.858 kb on + strand, within CSW01_04035at 833.943 kb on + strand, within CSW01_04035at 833.951 kb on - strand, within CSW01_04035at 834.101 kb on - strand, within CSW01_04035at 834.139 kb on + strand, within CSW01_04035at 834.144 kb on + strand, within CSW01_04035at 834.144 kb on + strand, within CSW01_04035at 834.157 kb on - strand, within CSW01_04035at 834.162 kb on - strand, within CSW01_04035at 834.180 kb on - strand, within CSW01_04035at 834.180 kb on - strand, within CSW01_04035at 834.180 kb on - strand, within CSW01_04035at 834.185 kb on - strand, within CSW01_04035at 834.203 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.342 kb on + strandat 834.342 kb on + strandat 834.350 kb on - strandat 834.350 kb on - strandat 834.355 kb on + strandat 834.355 kb on + strandat 834.355 kb on + strandat 834.363 kb on - strandat 834.363 kb on - strandat 834.363 kb on - strandat 834.365 kb on + strandat 834.365 kb on + strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.436 kb on + strandat 834.436 kb on + strandat 834.436 kb on + strandat 834.444 kb on - strandat 834.451 kb on + strandat 834.459 kb on - strandat 834.459 kb on - strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.592 kb on - strand, within CSW01_04040at 834.597 kb on - strand, within CSW01_04040at 834.655 kb on + strand, within CSW01_04040at 834.663 kb on - strand, within CSW01_04040at 834.711 kb on - strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.776 kb on - strand, within CSW01_04040at 834.806 kb on + strand, within CSW01_04040at 834.814 kb on - strand, within CSW01_04040at 834.865 kb on - strand, within CSW01_04040at 834.867 kb on + strand, within CSW01_04040at 834.870 kb on - strand, within CSW01_04040at 834.875 kb on - strand, within CSW01_04040at 834.880 kb on - strand, within CSW01_04040at 834.914 kb on - strand, within CSW01_04040at 834.999 kb on + strand, within CSW01_04040at 835.033 kb on + strand, within CSW01_04040at 835.033 kb on + strand, within CSW01_04040at 835.041 kb on - strand, within CSW01_04040at 835.042 kb on - strand, within CSW01_04040at 835.059 kb on - strand, within CSW01_04040at 835.090 kb on + strand, within CSW01_04040at 835.111 kb on + strand, within CSW01_04040at 835.151 kb on + strand, within CSW01_04040at 835.159 kb on - strand, within CSW01_04040at 835.159 kb on - strand, within CSW01_04040at 835.227 kb on - strandat 835.227 kb on - strandat 835.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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832,436 - CSW01_04030 0.23 -0.5
832,454 + CSW01_04030 0.25 +1.2
832,498 - CSW01_04030 0.29 -3.9
832,537 - CSW01_04030 0.33 +1.1
832,559 - CSW01_04030 0.35 +0.1
832,566 + CSW01_04030 0.36 -0.8
832,602 - CSW01_04030 0.39 +1.6
832,602 - CSW01_04030 0.39 +1.3
832,605 + CSW01_04030 0.39 -2.3
832,628 - CSW01_04030 0.42 -0.2
832,661 - CSW01_04030 0.45 -1.9
832,667 + CSW01_04030 0.45 -1.1
832,686 + CSW01_04030 0.47 +1.0
832,686 + CSW01_04030 0.47 -2.6
832,694 - CSW01_04030 0.48 -3.3
832,694 - CSW01_04030 0.48 +0.6
832,818 - CSW01_04030 0.60 -3.9
832,886 + CSW01_04030 0.66 -0.3
832,911 - CSW01_04030 0.68 +1.2
832,928 - CSW01_04030 0.70 -0.0
832,943 + CSW01_04030 0.71 +0.7
832,943 + CSW01_04030 0.71 +0.6
832,951 - CSW01_04030 0.72 -0.4
832,951 - CSW01_04030 0.72 +0.7
832,974 + CSW01_04030 0.74 +0.9
832,993 - CSW01_04030 0.76 -0.7
833,059 + CSW01_04030 0.82 -1.8
833,059 + CSW01_04030 0.82 +0.2
833,059 + CSW01_04030 0.82 +1.0
833,067 - CSW01_04030 0.83 +0.6
833,081 + CSW01_04030 0.85 +0.9
833,086 + CSW01_04030 0.85 +1.4
833,086 + CSW01_04030 0.85 +0.6
833,089 - CSW01_04030 0.85 -2.9
833,089 - CSW01_04030 0.85 +0.1
833,096 + CSW01_04030 0.86 -0.8
833,172 - -2.7
833,218 - -0.8
833,221 + -3.0
833,261 + -4.3
833,307 + +1.6
833,315 - -3.8
833,317 + -1.5
833,317 + -0.5
833,346 + CSW01_04035 0.12 -2.5
833,354 - CSW01_04035 0.12 +0.0
833,372 + CSW01_04035 0.14 +0.4
833,462 + CSW01_04035 0.22 -0.4
833,524 - CSW01_04035 0.28 +1.3
833,524 - CSW01_04035 0.28 +0.3
833,524 - CSW01_04035 0.28 +0.1
833,553 + CSW01_04035 0.31 -3.7
833,553 + CSW01_04035 0.31 -0.9
833,578 + CSW01_04035 0.33 +0.1
833,600 - CSW01_04035 0.35 +0.0
833,615 - CSW01_04035 0.36 -0.8
833,718 + CSW01_04035 0.46 -3.4
833,750 - CSW01_04035 0.49 -0.7
833,769 + CSW01_04035 0.51 -2.2
833,769 + CSW01_04035 0.51 -2.8
833,785 + CSW01_04035 0.52 -2.4
833,813 + CSW01_04035 0.55 -2.8
833,821 - CSW01_04035 0.56 -2.0
833,821 - CSW01_04035 0.56 +0.2
833,858 + CSW01_04035 0.59 +0.8
833,943 + CSW01_04035 0.67 +1.5
833,951 - CSW01_04035 0.68 -0.4
834,101 - CSW01_04035 0.82 -1.6
834,139 + CSW01_04035 0.85 -0.2
834,144 + CSW01_04035 0.86 -0.6
834,144 + CSW01_04035 0.86 +1.0
834,157 - CSW01_04035 0.87 +1.2
834,162 - CSW01_04035 0.87 +0.7
834,180 - CSW01_04035 0.89 +0.8
834,180 - CSW01_04035 0.89 -1.4
834,180 - CSW01_04035 0.89 -4.0
834,185 - CSW01_04035 0.89 -3.2
834,203 + -0.8
834,210 + +0.8
834,210 + -2.2
834,210 + -1.7
834,210 + +2.2
834,210 + +1.0
834,218 - +0.0
834,218 - +0.0
834,218 - -0.0
834,218 - +0.2
834,342 + -1.8
834,342 + +0.2
834,350 - -0.9
834,350 - +0.3
834,355 + +0.3
834,355 + +2.5
834,355 + +0.0
834,363 - -0.3
834,363 - +1.2
834,363 - +0.7
834,365 + -0.2
834,365 + -2.3
834,373 - +0.2
834,373 - +0.5
834,373 - +0.9
834,373 - -0.4
834,373 - +0.4
834,436 + -2.4
834,436 + -0.1
834,436 + +3.1
834,444 - -0.3
834,451 + +0.2
834,459 - -0.4
834,459 - +0.1
834,474 + -1.2
834,474 + +0.9
834,482 - -1.0
834,482 - -1.9
834,482 - -0.6
834,482 - -2.2
834,482 - -2.1
834,592 - CSW01_04040 0.21 -0.6
834,597 - CSW01_04040 0.22 -2.8
834,655 + CSW01_04040 0.29 -2.0
834,663 - CSW01_04040 0.30 -0.5
834,711 - CSW01_04040 0.35 -0.7
834,737 + CSW01_04040 0.38 +0.1
834,737 + CSW01_04040 0.38 +1.3
834,737 + CSW01_04040 0.38 -1.3
834,737 + CSW01_04040 0.38 +0.4
834,737 + CSW01_04040 0.38 +0.0
834,737 + CSW01_04040 0.38 +1.1
834,745 - CSW01_04040 0.39 -0.6
834,745 - CSW01_04040 0.39 -2.4
834,745 - CSW01_04040 0.39 +0.7
834,745 - CSW01_04040 0.39 -2.0
834,745 - CSW01_04040 0.39 +1.4
834,745 - CSW01_04040 0.39 +0.5
834,745 - CSW01_04040 0.39 +0.1
834,776 - CSW01_04040 0.43 -1.0
834,806 + CSW01_04040 0.47 -0.3
834,814 - CSW01_04040 0.47 -1.8
834,865 - CSW01_04040 0.54 +1.0
834,867 + CSW01_04040 0.54 +0.2
834,870 - CSW01_04040 0.54 +1.0
834,875 - CSW01_04040 0.55 +0.4
834,880 - CSW01_04040 0.55 -3.2
834,914 - CSW01_04040 0.59 +0.5
834,999 + CSW01_04040 0.70 -1.3
835,033 + CSW01_04040 0.74 -3.1
835,033 + CSW01_04040 0.74 +0.1
835,041 - CSW01_04040 0.75 -0.4
835,042 - CSW01_04040 0.75 -0.5
835,059 - CSW01_04040 0.77 -1.3
835,090 + CSW01_04040 0.80 -0.6
835,111 + CSW01_04040 0.83 +0.1
835,151 + CSW01_04040 0.88 +0.8
835,159 - CSW01_04040 0.89 +0.9
835,159 - CSW01_04040 0.89 -0.1
835,227 - +1.7
835,227 - -4.0
835,227 - -2.8

Or see this region's nucleotide sequence