Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03980

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03975 and CSW01_03980 are separated by 207 nucleotidesCSW01_03980 and CSW01_03985 are separated by 106 nucleotides CSW01_03975: CSW01_03975 - exodeoxyribonuclease VII large subunit, at 817,217 to 818,557 _03975 CSW01_03980: CSW01_03980 - IMP dehydrogenase, at 818,765 to 820,228 _03980 CSW01_03985: CSW01_03985 - GMP synthase (glutamine-hydrolyzing), at 820,335 to 821,888 _03985 Position (kb) 818 819 820 821Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 817.769 kb on + strand, within CSW01_03975at 817.789 kb on + strand, within CSW01_03975at 817.844 kb on + strand, within CSW01_03975at 817.976 kb on - strand, within CSW01_03975at 817.985 kb on + strand, within CSW01_03975at 818.022 kb on + strand, within CSW01_03975at 818.045 kb on - strand, within CSW01_03975at 818.101 kb on - strand, within CSW01_03975at 818.125 kb on + strand, within CSW01_03975at 818.361 kb on + strand, within CSW01_03975at 818.376 kb on + strand, within CSW01_03975at 818.384 kb on - strand, within CSW01_03975at 818.384 kb on - strand, within CSW01_03975at 818.421 kb on + strand, within CSW01_03975at 818.438 kb on - strandat 818.555 kb on - strandat 818.723 kb on + strandat 818.744 kb on - strandat 818.749 kb on - strandat 818.804 kb on + strandat 818.819 kb on + strandat 818.844 kb on + strandat 818.897 kb on - strandat 819.005 kb on + strand, within CSW01_03980at 819.020 kb on + strand, within CSW01_03980at 819.046 kb on + strand, within CSW01_03980at 819.054 kb on - strand, within CSW01_03980at 819.064 kb on - strand, within CSW01_03980at 819.066 kb on + strand, within CSW01_03980at 819.066 kb on + strand, within CSW01_03980at 819.071 kb on + strand, within CSW01_03980at 819.194 kb on + strand, within CSW01_03980at 819.199 kb on + strand, within CSW01_03980at 819.207 kb on - strand, within CSW01_03980at 819.225 kb on + strand, within CSW01_03980at 819.225 kb on + strand, within CSW01_03980at 819.233 kb on - strand, within CSW01_03980at 819.233 kb on - strand, within CSW01_03980at 819.327 kb on - strand, within CSW01_03980at 819.354 kb on - strand, within CSW01_03980at 819.392 kb on - strand, within CSW01_03980at 819.392 kb on - strand, within CSW01_03980at 819.392 kb on - strand, within CSW01_03980at 819.412 kb on - strand, within CSW01_03980at 819.443 kb on + strand, within CSW01_03980at 819.451 kb on - strand, within CSW01_03980at 819.451 kb on - strand, within CSW01_03980at 819.483 kb on - strand, within CSW01_03980at 819.494 kb on - strand, within CSW01_03980at 819.512 kb on + strand, within CSW01_03980at 819.531 kb on + strand, within CSW01_03980at 819.574 kb on - strand, within CSW01_03980at 819.589 kb on + strand, within CSW01_03980at 819.596 kb on - strand, within CSW01_03980at 819.635 kb on + strand, within CSW01_03980at 819.668 kb on + strand, within CSW01_03980at 819.678 kb on + strand, within CSW01_03980at 819.698 kb on + strand, within CSW01_03980at 819.706 kb on - strand, within CSW01_03980at 819.706 kb on - strand, within CSW01_03980at 819.872 kb on + strand, within CSW01_03980at 819.946 kb on + strand, within CSW01_03980at 819.946 kb on + strand, within CSW01_03980at 819.954 kb on + strand, within CSW01_03980at 820.019 kb on - strand, within CSW01_03980at 820.083 kb on + strandat 820.091 kb on - strandat 820.096 kb on + strandat 820.099 kb on - strandat 820.099 kb on - strandat 820.099 kb on - strandat 820.099 kb on - strandat 820.118 kb on - strandat 820.258 kb on + strandat 820.394 kb on - strandat 820.405 kb on + strandat 820.432 kb on + strandat 820.604 kb on + strand, within CSW01_03985at 820.604 kb on + strand, within CSW01_03985at 820.604 kb on + strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.647 kb on - strand, within CSW01_03985at 820.749 kb on - strand, within CSW01_03985at 820.842 kb on + strand, within CSW01_03985at 820.847 kb on + strand, within CSW01_03985at 820.850 kb on - strand, within CSW01_03985at 820.949 kb on - strand, within CSW01_03985at 821.002 kb on + strand, within CSW01_03985at 821.020 kb on + strand, within CSW01_03985at 821.037 kb on - strand, within CSW01_03985

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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817,769 + CSW01_03975 0.41 -0.9
817,789 + CSW01_03975 0.43 -0.0
817,844 + CSW01_03975 0.47 +0.3
817,976 - CSW01_03975 0.57 +1.3
817,985 + CSW01_03975 0.57 -0.7
818,022 + CSW01_03975 0.60 +1.9
818,045 - CSW01_03975 0.62 +0.4
818,101 - CSW01_03975 0.66 -0.3
818,125 + CSW01_03975 0.68 +1.4
818,361 + CSW01_03975 0.85 -1.1
818,376 + CSW01_03975 0.86 +2.1
818,384 - CSW01_03975 0.87 +2.1
818,384 - CSW01_03975 0.87 -2.0
818,421 + CSW01_03975 0.90 +1.8
818,438 - -0.9
818,555 - -1.3
818,723 + -1.3
818,744 - -1.8
818,749 - -2.4
818,804 + -3.7
818,819 + -3.0
818,844 + -2.6
818,897 - -3.7
819,005 + CSW01_03980 0.16 -2.4
819,020 + CSW01_03980 0.17 -0.9
819,046 + CSW01_03980 0.19 -3.9
819,054 - CSW01_03980 0.20 -4.8
819,064 - CSW01_03980 0.20 -2.6
819,066 + CSW01_03980 0.21 -3.8
819,066 + CSW01_03980 0.21 -1.1
819,071 + CSW01_03980 0.21 -1.8
819,194 + CSW01_03980 0.29 -2.6
819,199 + CSW01_03980 0.30 -4.8
819,207 - CSW01_03980 0.30 -3.3
819,225 + CSW01_03980 0.31 -0.8
819,225 + CSW01_03980 0.31 -3.4
819,233 - CSW01_03980 0.32 -1.3
819,233 - CSW01_03980 0.32 -2.9
819,327 - CSW01_03980 0.38 -1.2
819,354 - CSW01_03980 0.40 -2.7
819,392 - CSW01_03980 0.43 -2.3
819,392 - CSW01_03980 0.43 -5.0
819,392 - CSW01_03980 0.43 +1.2
819,412 - CSW01_03980 0.44 -2.3
819,443 + CSW01_03980 0.46 -2.8
819,451 - CSW01_03980 0.47 -2.3
819,451 - CSW01_03980 0.47 +0.8
819,483 - CSW01_03980 0.49 -1.7
819,494 - CSW01_03980 0.50 -1.4
819,512 + CSW01_03980 0.51 -0.1
819,531 + CSW01_03980 0.52 -3.1
819,574 - CSW01_03980 0.55 -1.1
819,589 + CSW01_03980 0.56 -1.6
819,596 - CSW01_03980 0.57 -2.5
819,635 + CSW01_03980 0.59 -3.3
819,668 + CSW01_03980 0.62 -2.1
819,678 + CSW01_03980 0.62 -2.0
819,698 + CSW01_03980 0.64 -1.7
819,706 - CSW01_03980 0.64 -3.4
819,706 - CSW01_03980 0.64 -3.3
819,872 + CSW01_03980 0.76 -1.1
819,946 + CSW01_03980 0.81 -2.1
819,946 + CSW01_03980 0.81 -2.7
819,954 + CSW01_03980 0.81 -5.1
820,019 - CSW01_03980 0.86 -1.5
820,083 + -1.5
820,091 - -4.7
820,096 + -3.0
820,099 - -1.8
820,099 - -2.6
820,099 - -2.7
820,099 - -2.1
820,118 - -5.3
820,258 + -0.4
820,394 - -1.3
820,405 + +0.8
820,432 + -0.1
820,604 + CSW01_03985 0.17 +0.7
820,604 + CSW01_03985 0.17 -0.2
820,604 + CSW01_03985 0.17 +0.6
820,612 - CSW01_03985 0.18 -1.1
820,612 - CSW01_03985 0.18 -3.0
820,612 - CSW01_03985 0.18 -1.5
820,612 - CSW01_03985 0.18 -1.3
820,612 - CSW01_03985 0.18 -0.2
820,612 - CSW01_03985 0.18 +0.5
820,647 - CSW01_03985 0.20 -1.3
820,749 - CSW01_03985 0.27 +0.6
820,842 + CSW01_03985 0.33 -1.3
820,847 + CSW01_03985 0.33 -2.1
820,850 - CSW01_03985 0.33 -0.4
820,949 - CSW01_03985 0.40 +1.2
821,002 + CSW01_03985 0.43 -0.8
821,020 + CSW01_03985 0.44 +0.4
821,037 - CSW01_03985 0.45 +0.6

Or see this region's nucleotide sequence