Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03870

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03865 and CSW01_03870 are separated by 167 nucleotidesCSW01_03870 and CSW01_03875 are separated by 178 nucleotidesCSW01_03875 and CSW01_03880 are separated by 69 nucleotides CSW01_03865: CSW01_03865 - protein translocase subunit SecF, at 796,453 to 797,400 _03865 CSW01_03870: CSW01_03870 - inositol monophosphatase, at 797,568 to 798,371 _03870 CSW01_03875: CSW01_03875 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 798,550 to 799,284 _03875 CSW01_03880: CSW01_03880 - HTH-type transcriptional regulator IscR, at 799,354 to 799,920 _03880 Position (kb) 797 798 799Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 796.580 kb on - strand, within CSW01_03865at 796.624 kb on - strand, within CSW01_03865at 796.712 kb on + strand, within CSW01_03865at 796.741 kb on + strand, within CSW01_03865at 796.981 kb on + strand, within CSW01_03865at 797.000 kb on - strand, within CSW01_03865at 797.045 kb on + strand, within CSW01_03865at 797.047 kb on + strand, within CSW01_03865at 797.047 kb on + strand, within CSW01_03865at 797.052 kb on + strand, within CSW01_03865at 797.052 kb on + strand, within CSW01_03865at 797.055 kb on - strand, within CSW01_03865at 797.055 kb on - strand, within CSW01_03865at 797.183 kb on + strand, within CSW01_03865at 797.246 kb on + strand, within CSW01_03865at 797.254 kb on - strand, within CSW01_03865at 797.270 kb on + strand, within CSW01_03865at 797.278 kb on - strand, within CSW01_03865at 797.278 kb on - strand, within CSW01_03865at 797.278 kb on - strand, within CSW01_03865at 797.330 kb on + strandat 797.375 kb on + strandat 797.389 kb on - strandat 797.466 kb on + strandat 797.474 kb on - strandat 797.756 kb on + strand, within CSW01_03870at 797.972 kb on - strand, within CSW01_03870at 797.980 kb on + strand, within CSW01_03870at 798.106 kb on + strand, within CSW01_03870at 798.201 kb on - strand, within CSW01_03870at 798.421 kb on - strandat 798.477 kb on + strandat 798.477 kb on + strandat 798.487 kb on - strandat 798.492 kb on - strandat 798.511 kb on - strandat 798.524 kb on + strandat 798.524 kb on + strandat 798.542 kb on - strandat 798.584 kb on + strandat 798.592 kb on - strandat 798.651 kb on + strand, within CSW01_03875at 798.669 kb on + strand, within CSW01_03875at 798.773 kb on + strand, within CSW01_03875at 798.778 kb on + strand, within CSW01_03875at 798.806 kb on + strand, within CSW01_03875at 798.806 kb on + strand, within CSW01_03875at 798.806 kb on + strand, within CSW01_03875at 798.806 kb on + strand, within CSW01_03875at 798.806 kb on + strand, within CSW01_03875at 798.814 kb on - strand, within CSW01_03875at 798.814 kb on - strand, within CSW01_03875at 798.814 kb on - strand, within CSW01_03875at 798.815 kb on + strand, within CSW01_03875at 798.821 kb on + strand, within CSW01_03875at 798.880 kb on + strand, within CSW01_03875at 798.888 kb on - strand, within CSW01_03875at 798.901 kb on - strand, within CSW01_03875at 798.907 kb on + strand, within CSW01_03875at 798.917 kb on + strand, within CSW01_03875at 798.952 kb on - strand, within CSW01_03875at 798.975 kb on - strand, within CSW01_03875at 798.989 kb on - strand, within CSW01_03875at 799.010 kb on + strand, within CSW01_03875at 799.010 kb on + strand, within CSW01_03875at 799.018 kb on - strand, within CSW01_03875at 799.026 kb on + strand, within CSW01_03875at 799.056 kb on + strand, within CSW01_03875at 799.064 kb on - strand, within CSW01_03875at 799.068 kb on + strand, within CSW01_03875at 799.126 kb on + strand, within CSW01_03875at 799.370 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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796,580 - CSW01_03865 0.13 +1.1
796,624 - CSW01_03865 0.18 +0.4
796,712 + CSW01_03865 0.27 +1.8
796,741 + CSW01_03865 0.30 -3.2
796,981 + CSW01_03865 0.56 +0.3
797,000 - CSW01_03865 0.58 -3.1
797,045 + CSW01_03865 0.62 -2.6
797,047 + CSW01_03865 0.63 +0.5
797,047 + CSW01_03865 0.63 +1.6
797,052 + CSW01_03865 0.63 -2.6
797,052 + CSW01_03865 0.63 -2.2
797,055 - CSW01_03865 0.64 -0.4
797,055 - CSW01_03865 0.64 -3.5
797,183 + CSW01_03865 0.77 -0.4
797,246 + CSW01_03865 0.84 +1.3
797,254 - CSW01_03865 0.84 -0.1
797,270 + CSW01_03865 0.86 -0.1
797,278 - CSW01_03865 0.87 +1.2
797,278 - CSW01_03865 0.87 +0.6
797,278 - CSW01_03865 0.87 -0.2
797,330 + +0.5
797,375 + -2.0
797,389 - +0.6
797,466 + +0.1
797,474 - -1.9
797,756 + CSW01_03870 0.23 +1.9
797,972 - CSW01_03870 0.50 -0.6
797,980 + CSW01_03870 0.51 -2.4
798,106 + CSW01_03870 0.67 +1.2
798,201 - CSW01_03870 0.79 +1.3
798,421 - +0.0
798,477 + +0.3
798,477 + +0.7
798,487 - -2.8
798,492 - +0.7
798,511 - -1.8
798,524 + +0.3
798,524 + +0.3
798,542 - +2.0
798,584 + -0.1
798,592 - -0.8
798,651 + CSW01_03875 0.14 +0.2
798,669 + CSW01_03875 0.16 -4.3
798,773 + CSW01_03875 0.30 -2.7
798,778 + CSW01_03875 0.31 -1.5
798,806 + CSW01_03875 0.35 +1.0
798,806 + CSW01_03875 0.35 -4.3
798,806 + CSW01_03875 0.35 -0.1
798,806 + CSW01_03875 0.35 +0.3
798,806 + CSW01_03875 0.35 -2.7
798,814 - CSW01_03875 0.36 +1.2
798,814 - CSW01_03875 0.36 +1.2
798,814 - CSW01_03875 0.36 -1.5
798,815 + CSW01_03875 0.36 +0.3
798,821 + CSW01_03875 0.37 -1.0
798,880 + CSW01_03875 0.45 +0.9
798,888 - CSW01_03875 0.46 +1.3
798,901 - CSW01_03875 0.48 +0.9
798,907 + CSW01_03875 0.49 +0.1
798,917 + CSW01_03875 0.50 +2.3
798,952 - CSW01_03875 0.55 +0.3
798,975 - CSW01_03875 0.58 -0.1
798,989 - CSW01_03875 0.60 -1.1
799,010 + CSW01_03875 0.63 -0.2
799,010 + CSW01_03875 0.63 +1.2
799,018 - CSW01_03875 0.64 -1.9
799,026 + CSW01_03875 0.65 +0.3
799,056 + CSW01_03875 0.69 -1.8
799,064 - CSW01_03875 0.70 -0.1
799,068 + CSW01_03875 0.70 +1.7
799,126 + CSW01_03875 0.78 -0.2
799,370 + -1.8

Or see this region's nucleotide sequence