Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03825

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03820 and CSW01_03825 are separated by 550 nucleotidesCSW01_03825 and CSW01_03830 are separated by 129 nucleotides CSW01_03820: CSW01_03820 - hydrogen peroxide-inducible genes activator, at 786,239 to 787,144 _03820 CSW01_03825: CSW01_03825 - malate synthase A, at 787,695 to 789,365 _03825 CSW01_03830: CSW01_03830 - isocitrate lyase, at 789,495 to 790,808 _03830 Position (kb) 787 788 789 790Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 786.704 kb on + strand, within CSW01_03820at 786.730 kb on - strand, within CSW01_03820at 786.730 kb on - strand, within CSW01_03820at 786.807 kb on + strand, within CSW01_03820at 786.815 kb on - strand, within CSW01_03820at 786.820 kb on - strand, within CSW01_03820at 786.853 kb on + strand, within CSW01_03820at 786.853 kb on + strand, within CSW01_03820at 786.853 kb on + strand, within CSW01_03820at 786.855 kb on + strand, within CSW01_03820at 786.863 kb on - strand, within CSW01_03820at 786.863 kb on - strand, within CSW01_03820at 786.920 kb on - strand, within CSW01_03820at 786.929 kb on + strand, within CSW01_03820at 786.944 kb on - strand, within CSW01_03820at 787.104 kb on + strandat 787.125 kb on - strandat 787.151 kb on + strandat 787.178 kb on + strandat 787.259 kb on + strandat 787.588 kb on + strandat 787.595 kb on - strandat 787.608 kb on - strandat 787.633 kb on - strandat 787.747 kb on + strandat 787.779 kb on + strandat 787.816 kb on - strandat 787.823 kb on - strandat 788.016 kb on - strand, within CSW01_03825at 788.147 kb on - strand, within CSW01_03825at 788.159 kb on + strand, within CSW01_03825at 788.173 kb on + strand, within CSW01_03825at 788.178 kb on + strand, within CSW01_03825at 788.178 kb on + strand, within CSW01_03825at 788.186 kb on - strand, within CSW01_03825at 788.192 kb on + strand, within CSW01_03825at 788.194 kb on + strand, within CSW01_03825at 788.194 kb on + strand, within CSW01_03825at 788.196 kb on - strand, within CSW01_03825at 788.201 kb on - strand, within CSW01_03825at 788.218 kb on + strand, within CSW01_03825at 788.228 kb on + strand, within CSW01_03825at 788.236 kb on - strand, within CSW01_03825at 788.236 kb on - strand, within CSW01_03825at 788.236 kb on - strand, within CSW01_03825at 788.239 kb on + strand, within CSW01_03825at 788.247 kb on + strand, within CSW01_03825at 788.247 kb on - strand, within CSW01_03825at 788.255 kb on - strand, within CSW01_03825at 788.260 kb on - strand, within CSW01_03825at 788.260 kb on - strand, within CSW01_03825at 788.260 kb on - strand, within CSW01_03825at 788.269 kb on + strand, within CSW01_03825at 788.271 kb on + strand, within CSW01_03825at 788.295 kb on + strand, within CSW01_03825at 788.333 kb on - strand, within CSW01_03825at 788.375 kb on - strand, within CSW01_03825at 788.440 kb on - strand, within CSW01_03825at 788.445 kb on - strand, within CSW01_03825at 788.489 kb on + strand, within CSW01_03825at 788.554 kb on - strand, within CSW01_03825at 788.564 kb on + strand, within CSW01_03825at 788.582 kb on - strand, within CSW01_03825at 788.587 kb on - strand, within CSW01_03825at 788.620 kb on - strand, within CSW01_03825at 788.664 kb on - strand, within CSW01_03825at 788.672 kb on + strand, within CSW01_03825at 788.672 kb on + strand, within CSW01_03825at 788.680 kb on - strand, within CSW01_03825at 788.680 kb on - strand, within CSW01_03825at 788.691 kb on + strand, within CSW01_03825at 788.742 kb on - strand, within CSW01_03825at 788.744 kb on + strand, within CSW01_03825at 788.752 kb on - strand, within CSW01_03825at 788.872 kb on + strand, within CSW01_03825at 788.875 kb on - strand, within CSW01_03825at 788.905 kb on - strand, within CSW01_03825at 788.918 kb on + strand, within CSW01_03825at 788.978 kb on + strand, within CSW01_03825at 789.006 kb on + strand, within CSW01_03825at 789.073 kb on + strand, within CSW01_03825at 789.187 kb on + strand, within CSW01_03825at 789.189 kb on + strand, within CSW01_03825at 789.228 kb on - strandat 789.313 kb on + strandat 789.321 kb on + strandat 789.321 kb on - strandat 789.329 kb on - strandat 789.367 kb on - strandat 789.412 kb on - strandat 789.429 kb on + strandat 789.429 kb on + strandat 789.429 kb on + strandat 789.429 kb on + strandat 789.437 kb on - strandat 789.442 kb on - strandat 789.442 kb on - strandat 789.475 kb on + strandat 789.499 kb on - strandat 789.583 kb on - strandat 789.618 kb on - strandat 789.623 kb on + strandat 789.623 kb on + strandat 789.646 kb on + strand, within CSW01_03830at 789.649 kb on - strand, within CSW01_03830at 789.770 kb on - strand, within CSW01_03830at 789.792 kb on + strand, within CSW01_03830at 789.800 kb on - strand, within CSW01_03830at 789.807 kb on + strand, within CSW01_03830at 789.807 kb on + strand, within CSW01_03830at 789.820 kb on - strand, within CSW01_03830at 789.835 kb on + strand, within CSW01_03830at 789.852 kb on - strand, within CSW01_03830at 789.858 kb on + strand, within CSW01_03830at 789.866 kb on - strand, within CSW01_03830at 789.938 kb on - strand, within CSW01_03830at 789.940 kb on + strand, within CSW01_03830at 789.950 kb on - strand, within CSW01_03830at 789.995 kb on + strand, within CSW01_03830at 790.047 kb on - strand, within CSW01_03830at 790.059 kb on + strand, within CSW01_03830at 790.060 kb on - strand, within CSW01_03830at 790.113 kb on - strand, within CSW01_03830at 790.281 kb on + strand, within CSW01_03830at 790.289 kb on - strand, within CSW01_03830at 790.289 kb on - strand, within CSW01_03830at 790.289 kb on - strand, within CSW01_03830at 790.302 kb on + strand, within CSW01_03830at 790.348 kb on - strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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786,704 + CSW01_03820 0.51 +1.8
786,730 - CSW01_03820 0.54 +0.6
786,730 - CSW01_03820 0.54 -0.1
786,807 + CSW01_03820 0.63 -2.0
786,815 - CSW01_03820 0.64 +0.6
786,820 - CSW01_03820 0.64 +1.7
786,853 + CSW01_03820 0.68 +1.1
786,853 + CSW01_03820 0.68 +1.3
786,853 + CSW01_03820 0.68 +0.8
786,855 + CSW01_03820 0.68 +0.2
786,863 - CSW01_03820 0.69 +1.7
786,863 - CSW01_03820 0.69 -2.5
786,920 - CSW01_03820 0.75 +1.1
786,929 + CSW01_03820 0.76 -1.8
786,944 - CSW01_03820 0.78 -2.6
787,104 + +1.4
787,125 - +1.2
787,151 + -4.1
787,178 + +0.0
787,259 + +0.6
787,588 + +1.1
787,595 - +0.5
787,608 - +0.7
787,633 - -2.4
787,747 + -1.0
787,779 + +0.9
787,816 - +0.8
787,823 - -3.3
788,016 - CSW01_03825 0.19 -0.3
788,147 - CSW01_03825 0.27 -0.3
788,159 + CSW01_03825 0.28 +1.1
788,173 + CSW01_03825 0.29 -2.3
788,178 + CSW01_03825 0.29 -2.7
788,178 + CSW01_03825 0.29 -2.0
788,186 - CSW01_03825 0.29 +1.2
788,192 + CSW01_03825 0.30 +1.0
788,194 + CSW01_03825 0.30 +0.6
788,194 + CSW01_03825 0.30 -4.2
788,196 - CSW01_03825 0.30 -2.2
788,201 - CSW01_03825 0.30 +0.1
788,218 + CSW01_03825 0.31 +2.2
788,228 + CSW01_03825 0.32 -3.5
788,236 - CSW01_03825 0.32 -2.1
788,236 - CSW01_03825 0.32 -3.4
788,236 - CSW01_03825 0.32 +1.1
788,239 + CSW01_03825 0.33 -1.1
788,247 + CSW01_03825 0.33 +0.6
788,247 - CSW01_03825 0.33 -4.0
788,255 - CSW01_03825 0.34 -2.2
788,260 - CSW01_03825 0.34 -0.9
788,260 - CSW01_03825 0.34 -1.2
788,260 - CSW01_03825 0.34 -1.1
788,269 + CSW01_03825 0.34 -0.5
788,271 + CSW01_03825 0.34 -1.2
788,295 + CSW01_03825 0.36 -1.1
788,333 - CSW01_03825 0.38 +0.2
788,375 - CSW01_03825 0.41 -2.5
788,440 - CSW01_03825 0.45 -3.3
788,445 - CSW01_03825 0.45 -2.7
788,489 + CSW01_03825 0.48 -0.4
788,554 - CSW01_03825 0.51 +0.0
788,564 + CSW01_03825 0.52 +0.7
788,582 - CSW01_03825 0.53 +1.4
788,587 - CSW01_03825 0.53 +1.0
788,620 - CSW01_03825 0.55 +0.2
788,664 - CSW01_03825 0.58 -2.2
788,672 + CSW01_03825 0.58 -2.7
788,672 + CSW01_03825 0.58 -1.1
788,680 - CSW01_03825 0.59 -0.7
788,680 - CSW01_03825 0.59 -0.0
788,691 + CSW01_03825 0.60 -3.2
788,742 - CSW01_03825 0.63 -1.4
788,744 + CSW01_03825 0.63 -0.4
788,752 - CSW01_03825 0.63 +0.9
788,872 + CSW01_03825 0.70 -2.0
788,875 - CSW01_03825 0.71 -2.0
788,905 - CSW01_03825 0.72 -2.1
788,918 + CSW01_03825 0.73 -3.5
788,978 + CSW01_03825 0.77 -1.2
789,006 + CSW01_03825 0.78 +0.6
789,073 + CSW01_03825 0.82 -0.4
789,187 + CSW01_03825 0.89 +0.2
789,189 + CSW01_03825 0.89 +0.3
789,228 - -0.9
789,313 + -0.0
789,321 + -0.3
789,321 - -2.0
789,329 - -0.3
789,367 - +0.3
789,412 - -2.5
789,429 + -0.1
789,429 + +0.9
789,429 + +0.4
789,429 + -0.0
789,437 - -1.6
789,442 - -1.4
789,442 - +0.8
789,475 + -1.6
789,499 - -0.3
789,583 - +0.9
789,618 - +1.3
789,623 + -1.1
789,623 + +0.8
789,646 + CSW01_03830 0.11 +0.5
789,649 - CSW01_03830 0.12 +2.1
789,770 - CSW01_03830 0.21 -0.2
789,792 + CSW01_03830 0.23 +0.0
789,800 - CSW01_03830 0.23 +0.1
789,807 + CSW01_03830 0.24 -0.2
789,807 + CSW01_03830 0.24 -2.5
789,820 - CSW01_03830 0.25 +0.2
789,835 + CSW01_03830 0.26 -4.0
789,852 - CSW01_03830 0.27 +1.3
789,858 + CSW01_03830 0.28 +0.8
789,866 - CSW01_03830 0.28 -0.1
789,938 - CSW01_03830 0.34 -0.1
789,940 + CSW01_03830 0.34 -2.8
789,950 - CSW01_03830 0.35 -1.1
789,995 + CSW01_03830 0.38 -2.4
790,047 - CSW01_03830 0.42 -2.1
790,059 + CSW01_03830 0.43 -2.2
790,060 - CSW01_03830 0.43 -3.1
790,113 - CSW01_03830 0.47 +0.2
790,281 + CSW01_03830 0.60 +0.2
790,289 - CSW01_03830 0.60 -1.1
790,289 - CSW01_03830 0.60 -1.2
790,289 - CSW01_03830 0.60 +1.0
790,302 + CSW01_03830 0.61 +1.5
790,348 - CSW01_03830 0.65 -3.1
790,350 + CSW01_03830 0.65 +0.8
790,350 + CSW01_03830 0.65 +0.8
790,350 + CSW01_03830 0.65 +0.5
790,350 + CSW01_03830 0.65 +0.4
790,358 - CSW01_03830 0.66 +0.1
790,358 - CSW01_03830 0.66 -1.6
790,358 - CSW01_03830 0.66 +0.3
790,358 - CSW01_03830 0.66 +0.5
790,358 - CSW01_03830 0.66 +1.7

Or see this region's nucleotide sequence