Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03400 and CSW01_03405 are separated by 141 nucleotides CSW01_03405 and CSW01_03410 are separated by 362 nucleotides CSW01_03410 and CSW01_03415 are separated by 115 nucleotides
CSW01_03400: CSW01_03400 - tRNA pseudouridine(55) synthase TruB, at 687,277 to 688,215
_03400
CSW01_03405: CSW01_03405 - 30S ribosomal protein S15, at 688,357 to 688,626
_03405
CSW01_03410: CSW01_03410 - polyribonucleotide nucleotidyltransferase, at 688,989 to 691,118
_03410
CSW01_03415: CSW01_03415 - lipoprotein NlpI, at 691,234 to 692,145
_03415
Position (kb) 688
689
690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 688.021 kb on + strand, within CSW01_03400 at 688.173 kb on + strand at 688.173 kb on + strand at 688.181 kb on - strand at 688.181 kb on - strand at 688.181 kb on - strand at 688.181 kb on - strand at 688.181 kb on - strand at 689.753 kb on + strand, within CSW01_03410 at 689.858 kb on - strand, within CSW01_03410 at 690.015 kb on - strand, within CSW01_03410 at 690.092 kb on + strand, within CSW01_03410 at 690.124 kb on - strand, within CSW01_03410 at 690.844 kb on + strand, within CSW01_03410 at 690.854 kb on - strand, within CSW01_03410 at 690.944 kb on - strand at 691.224 kb on + strand at 691.224 kb on + strand at 691.230 kb on - strand at 691.323 kb on + strand at 691.557 kb on + strand, within CSW01_03415 at 691.557 kb on + strand, within CSW01_03415 at 691.634 kb on + strand, within CSW01_03415 at 691.830 kb on + strand, within CSW01_03415 at 691.838 kb on + strand, within CSW01_03415 at 691.853 kb on + strand, within CSW01_03415 at 691.947 kb on + strand, within CSW01_03415 at 691.955 kb on - strand, within CSW01_03415 at 691.987 kb on + strand, within CSW01_03415 at 692.027 kb on + strand, within CSW01_03415 at 692.035 kb on - strand, within CSW01_03415 at 692.073 kb on + strand at 692.115 kb on - strand at 692.118 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 688,021 + CSW01_03400 0.79 -3.1 688,173 + +2.0 688,173 + +0.9 688,181 - +1.0 688,181 - +2.2 688,181 - +0.3 688,181 - +0.4 688,181 - +1.9 689,753 + CSW01_03410 0.36 -1.7 689,858 - CSW01_03410 0.41 -2.9 690,015 - CSW01_03410 0.48 -1.4 690,092 + CSW01_03410 0.52 -1.7 690,124 - CSW01_03410 0.53 -1.7 690,844 + CSW01_03410 0.87 -3.3 690,854 - CSW01_03410 0.88 -2.6 690,944 - -1.7 691,224 + -2.6 691,224 + +0.7 691,230 - -0.3 691,323 + -0.4 691,557 + CSW01_03415 0.35 +0.5 691,557 + CSW01_03415 0.35 +0.8 691,634 + CSW01_03415 0.44 +1.3 691,830 + CSW01_03415 0.65 +1.5 691,838 + CSW01_03415 0.66 -2.3 691,853 + CSW01_03415 0.68 -0.7 691,947 + CSW01_03415 0.78 -2.9 691,955 - CSW01_03415 0.79 -0.9 691,987 + CSW01_03415 0.83 +0.3 692,027 + CSW01_03415 0.87 +0.4 692,035 - CSW01_03415 0.88 -0.3 692,073 + -2.8 692,115 - -0.7 692,118 + +0.2
Or see this region's nucleotide sequence