Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02825

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02815 and CSW01_02820 overlap by 38 nucleotidesCSW01_02820 and CSW01_02825 overlap by 8 nucleotidesCSW01_02825 and CSW01_02830 overlap by 1 nucleotides CSW01_02815: CSW01_02815 - tRNA pseudouridine(13) synthase TruD, at 560,006 to 561,091 _02815 CSW01_02820: CSW01_02820 - 5'-nucleotidase SurE, at 561,054 to 561,845 _02820 CSW01_02825: CSW01_02825 - protein-L-isoaspartate O-methyltransferase, at 561,838 to 562,464 _02825 CSW01_02830: CSW01_02830 - murein hydrolase activator NlpD, at 562,464 to 563,399 _02830 Position (kb) 561 562 563Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 560.956 kb on - strand, within CSW01_02815at 560.975 kb on + strand, within CSW01_02815at 560.975 kb on + strand, within CSW01_02815at 561.024 kb on + strandat 561.024 kb on + strandat 561.030 kb on - strandat 561.229 kb on + strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.259 kb on - strand, within CSW01_02820at 561.334 kb on - strand, within CSW01_02820at 561.346 kb on + strand, within CSW01_02820at 561.373 kb on + strand, within CSW01_02820at 561.406 kb on - strand, within CSW01_02820at 561.465 kb on - strand, within CSW01_02820at 561.525 kb on + strand, within CSW01_02820at 561.756 kb on + strand, within CSW01_02820at 561.770 kb on + strandat 561.778 kb on - strandat 561.894 kb on - strandat 561.960 kb on + strand, within CSW01_02825at 561.977 kb on + strand, within CSW01_02825at 561.987 kb on + strand, within CSW01_02825at 561.987 kb on + strand, within CSW01_02825at 561.994 kb on + strand, within CSW01_02825at 561.995 kb on + strand, within CSW01_02825at 562.000 kb on + strand, within CSW01_02825at 562.000 kb on + strand, within CSW01_02825at 562.002 kb on - strand, within CSW01_02825at 562.002 kb on - strand, within CSW01_02825at 562.003 kb on - strand, within CSW01_02825at 562.008 kb on - strand, within CSW01_02825at 562.008 kb on - strand, within CSW01_02825at 562.017 kb on + strand, within CSW01_02825at 562.025 kb on - strand, within CSW01_02825at 562.098 kb on - strand, within CSW01_02825at 562.142 kb on + strand, within CSW01_02825at 562.142 kb on + strand, within CSW01_02825at 562.152 kb on + strand, within CSW01_02825at 562.152 kb on + strand, within CSW01_02825at 562.160 kb on - strand, within CSW01_02825at 562.315 kb on - strand, within CSW01_02825at 562.334 kb on + strand, within CSW01_02825at 562.409 kb on - strandat 562.416 kb on + strandat 562.423 kb on + strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.522 kb on + strandat 562.530 kb on - strandat 562.530 kb on - strandat 562.592 kb on + strand, within CSW01_02830at 562.633 kb on + strand, within CSW01_02830at 562.697 kb on + strand, within CSW01_02830at 562.705 kb on - strand, within CSW01_02830at 562.705 kb on - strand, within CSW01_02830at 562.714 kb on - strand, within CSW01_02830at 562.786 kb on - strand, within CSW01_02830at 562.962 kb on - strand, within CSW01_02830at 562.969 kb on - strand, within CSW01_02830at 563.012 kb on + strand, within CSW01_02830at 563.025 kb on + strand, within CSW01_02830at 563.060 kb on + strand, within CSW01_02830at 563.114 kb on - strand, within CSW01_02830at 563.114 kb on - strand, within CSW01_02830at 563.139 kb on + strand, within CSW01_02830at 563.142 kb on - strand, within CSW01_02830at 563.147 kb on - strand, within CSW01_02830at 563.168 kb on + strand, within CSW01_02830at 563.236 kb on - strand, within CSW01_02830at 563.292 kb on + strand, within CSW01_02830at 563.332 kb on + strandat 563.332 kb on - strandat 563.402 kb on - strandat 563.456 kb on + strandat 563.461 kb on - strandat 563.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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560,956 - CSW01_02815 0.87 -1.6
560,975 + CSW01_02815 0.89 -0.7
560,975 + CSW01_02815 0.89 -0.6
561,024 + -0.4
561,024 + -0.0
561,030 - -0.5
561,229 + CSW01_02820 0.22 +1.4
561,237 - CSW01_02820 0.23 +1.6
561,237 - CSW01_02820 0.23 +1.8
561,237 - CSW01_02820 0.23 +0.5
561,237 - CSW01_02820 0.23 +1.0
561,259 - CSW01_02820 0.26 +0.1
561,334 - CSW01_02820 0.35 +2.1
561,346 + CSW01_02820 0.37 +1.1
561,373 + CSW01_02820 0.40 +0.1
561,406 - CSW01_02820 0.44 -0.5
561,465 - CSW01_02820 0.52 +0.6
561,525 + CSW01_02820 0.59 -2.9
561,756 + CSW01_02820 0.89 +0.1
561,770 + -0.0
561,778 - -0.1
561,894 - -0.7
561,960 + CSW01_02825 0.19 +0.5
561,977 + CSW01_02825 0.22 +1.7
561,987 + CSW01_02825 0.24 +0.6
561,987 + CSW01_02825 0.24 +0.9
561,994 + CSW01_02825 0.25 +0.9
561,995 + CSW01_02825 0.25 +0.0
562,000 + CSW01_02825 0.26 -3.0
562,000 + CSW01_02825 0.26 -1.9
562,002 - CSW01_02825 0.26 -1.6
562,002 - CSW01_02825 0.26 +1.1
562,003 - CSW01_02825 0.26 -4.1
562,008 - CSW01_02825 0.27 +0.8
562,008 - CSW01_02825 0.27 -3.0
562,017 + CSW01_02825 0.29 -1.9
562,025 - CSW01_02825 0.30 +0.3
562,098 - CSW01_02825 0.41 -1.4
562,142 + CSW01_02825 0.48 -1.7
562,142 + CSW01_02825 0.48 -0.3
562,152 + CSW01_02825 0.50 -0.4
562,152 + CSW01_02825 0.50 +1.1
562,160 - CSW01_02825 0.51 +0.5
562,315 - CSW01_02825 0.76 +0.7
562,334 + CSW01_02825 0.79 -0.7
562,409 - -0.4
562,416 + -2.3
562,423 + +0.0
562,424 - +0.7
562,424 - -3.0
562,424 - -0.4
562,424 - -2.2
562,424 - -0.8
562,522 + -3.0
562,530 - +1.0
562,530 - -1.7
562,592 + CSW01_02830 0.14 -1.1
562,633 + CSW01_02830 0.18 -2.3
562,697 + CSW01_02830 0.25 +0.4
562,705 - CSW01_02830 0.26 -3.0
562,705 - CSW01_02830 0.26 +1.2
562,714 - CSW01_02830 0.27 -1.1
562,786 - CSW01_02830 0.34 +0.9
562,962 - CSW01_02830 0.53 +0.6
562,969 - CSW01_02830 0.54 +2.3
563,012 + CSW01_02830 0.59 -0.3
563,025 + CSW01_02830 0.60 +1.8
563,060 + CSW01_02830 0.64 +2.0
563,114 - CSW01_02830 0.69 +2.5
563,114 - CSW01_02830 0.69 -0.8
563,139 + CSW01_02830 0.72 -1.9
563,142 - CSW01_02830 0.72 -0.8
563,147 - CSW01_02830 0.73 +2.2
563,168 + CSW01_02830 0.75 -2.3
563,236 - CSW01_02830 0.82 +1.7
563,292 + CSW01_02830 0.88 -1.4
563,332 + +0.7
563,332 - +1.6
563,402 - +1.2
563,456 + +1.8
563,461 - -2.5
563,464 - -3.1

Or see this region's nucleotide sequence