Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02715

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02710 and CSW01_02715 are separated by 103 nucleotidesCSW01_02715 and CSW01_02720 are separated by 621 nucleotides CSW01_02710: CSW01_02710 - chemotaxis protein, at 540,058 to 541,647 _02710 CSW01_02715: CSW01_02715 - transcriptional antiterminator, at 541,751 to 542,479 _02715 CSW01_02720: CSW01_02720 - AraC family transcriptional regulator, at 543,101 to 543,916 _02720 Position (kb) 541 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 540.781 kb on + strand, within CSW01_02710at 540.789 kb on - strand, within CSW01_02710at 540.789 kb on - strand, within CSW01_02710at 540.796 kb on + strand, within CSW01_02710at 540.796 kb on + strand, within CSW01_02710at 540.796 kb on + strand, within CSW01_02710at 540.796 kb on + strand, within CSW01_02710at 540.804 kb on - strand, within CSW01_02710at 540.804 kb on - strand, within CSW01_02710at 540.877 kb on + strand, within CSW01_02710at 540.877 kb on + strand, within CSW01_02710at 540.877 kb on + strand, within CSW01_02710at 540.885 kb on - strand, within CSW01_02710at 540.885 kb on - strand, within CSW01_02710at 540.885 kb on - strand, within CSW01_02710at 540.897 kb on + strand, within CSW01_02710at 540.897 kb on + strand, within CSW01_02710at 540.905 kb on - strand, within CSW01_02710at 540.905 kb on - strand, within CSW01_02710at 540.952 kb on - strand, within CSW01_02710at 541.003 kb on - strand, within CSW01_02710at 541.092 kb on - strand, within CSW01_02710at 541.101 kb on + strand, within CSW01_02710at 541.123 kb on - strand, within CSW01_02710at 541.191 kb on + strand, within CSW01_02710at 541.205 kb on + strand, within CSW01_02710at 541.205 kb on + strand, within CSW01_02710at 541.219 kb on + strand, within CSW01_02710at 541.219 kb on + strand, within CSW01_02710at 541.281 kb on - strand, within CSW01_02710at 541.310 kb on + strand, within CSW01_02710at 541.356 kb on - strand, within CSW01_02710at 541.371 kb on + strand, within CSW01_02710at 541.376 kb on + strand, within CSW01_02710at 541.379 kb on - strand, within CSW01_02710at 541.414 kb on + strand, within CSW01_02710at 541.421 kb on - strand, within CSW01_02710at 541.427 kb on - strand, within CSW01_02710at 541.427 kb on - strand, within CSW01_02710at 541.427 kb on - strand, within CSW01_02710at 541.451 kb on - strand, within CSW01_02710at 541.479 kb on + strand, within CSW01_02710at 541.527 kb on - strandat 541.591 kb on + strandat 541.598 kb on + strandat 541.598 kb on + strandat 541.598 kb on + strandat 541.599 kb on - strandat 541.676 kb on + strandat 541.676 kb on + strandat 541.676 kb on + strandat 541.684 kb on - strandat 541.684 kb on - strandat 541.731 kb on + strandat 541.751 kb on + strandat 541.751 kb on + strandat 541.753 kb on + strandat 541.759 kb on - strandat 541.770 kb on + strandat 541.797 kb on + strandat 541.818 kb on - strandat 541.962 kb on + strand, within CSW01_02715at 541.980 kb on - strand, within CSW01_02715at 542.047 kb on + strand, within CSW01_02715at 542.052 kb on + strand, within CSW01_02715at 542.060 kb on + strand, within CSW01_02715at 542.071 kb on + strand, within CSW01_02715at 542.125 kb on - strand, within CSW01_02715at 542.125 kb on - strand, within CSW01_02715at 542.151 kb on - strand, within CSW01_02715at 542.151 kb on - strand, within CSW01_02715at 542.195 kb on + strand, within CSW01_02715at 542.203 kb on + strand, within CSW01_02715at 542.203 kb on + strand, within CSW01_02715at 542.211 kb on - strand, within CSW01_02715at 542.211 kb on - strand, within CSW01_02715at 542.235 kb on + strand, within CSW01_02715at 542.269 kb on - strand, within CSW01_02715at 542.282 kb on + strand, within CSW01_02715at 542.282 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.292 kb on + strand, within CSW01_02715at 542.300 kb on - strand, within CSW01_02715at 542.300 kb on - strand, within CSW01_02715at 542.300 kb on - strand, within CSW01_02715at 542.307 kb on + strand, within CSW01_02715at 542.315 kb on - strand, within CSW01_02715at 542.315 kb on - strand, within CSW01_02715at 542.319 kb on + strand, within CSW01_02715at 542.327 kb on - strand, within CSW01_02715at 542.334 kb on - strand, within CSW01_02715at 542.336 kb on + strand, within CSW01_02715at 542.336 kb on + strand, within CSW01_02715at 542.371 kb on + strand, within CSW01_02715at 542.395 kb on + strand, within CSW01_02715at 542.411 kb on + strandat 542.411 kb on + strandat 542.412 kb on + strandat 542.412 kb on + strandat 542.425 kb on - strandat 542.432 kb on + strandat 542.450 kb on + strandat 542.457 kb on + strandat 542.457 kb on - strandat 542.472 kb on + strandat 542.480 kb on - strandat 542.513 kb on + strandat 542.513 kb on + strandat 542.521 kb on + strandat 542.536 kb on - strandat 542.579 kb on + strandat 542.580 kb on + strandat 542.580 kb on + strandat 542.581 kb on + strandat 542.585 kb on + strandat 542.585 kb on + strandat 542.585 kb on + strandat 542.585 kb on + strandat 542.588 kb on - strandat 542.588 kb on - strandat 542.588 kb on - strandat 542.593 kb on - strandat 542.617 kb on + strandat 542.632 kb on + strandat 542.775 kb on - strandat 542.793 kb on - strandat 542.989 kb on + strandat 542.997 kb on - strandat 543.011 kb on - strandat 543.046 kb on - strandat 543.057 kb on - strandat 543.057 kb on - strandat 543.104 kb on + strandat 543.104 kb on + strandat 543.104 kb on + strandat 543.104 kb on + strandat 543.104 kb on + strandat 543.226 kb on - strand, within CSW01_02720at 543.228 kb on - strand, within CSW01_02720at 543.257 kb on - strand, within CSW01_02720at 543.351 kb on + strand, within CSW01_02720at 543.351 kb on + strand, within CSW01_02720at 543.351 kb on + strand, within CSW01_02720at 543.364 kb on + strand, within CSW01_02720at 543.364 kb on + strand, within CSW01_02720at 543.374 kb on + strand, within CSW01_02720at 543.379 kb on + strand, within CSW01_02720at 543.386 kb on + strand, within CSW01_02720at 543.387 kb on - strand, within CSW01_02720at 543.392 kb on - strand, within CSW01_02720at 543.396 kb on - strand, within CSW01_02720at 543.396 kb on - strand, within CSW01_02720

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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540,781 + CSW01_02710 0.45 +0.7
540,789 - CSW01_02710 0.46 -2.6
540,789 - CSW01_02710 0.46 +0.7
540,796 + CSW01_02710 0.46 +0.8
540,796 + CSW01_02710 0.46 -1.4
540,796 + CSW01_02710 0.46 +0.8
540,796 + CSW01_02710 0.46 -0.4
540,804 - CSW01_02710 0.47 -0.0
540,804 - CSW01_02710 0.47 +0.0
540,877 + CSW01_02710 0.52 +1.0
540,877 + CSW01_02710 0.52 -3.3
540,877 + CSW01_02710 0.52 +0.8
540,885 - CSW01_02710 0.52 -1.0
540,885 - CSW01_02710 0.52 -2.9
540,885 - CSW01_02710 0.52 +0.4
540,897 + CSW01_02710 0.53 -0.2
540,897 + CSW01_02710 0.53 -1.7
540,905 - CSW01_02710 0.53 -0.5
540,905 - CSW01_02710 0.53 -0.8
540,952 - CSW01_02710 0.56 -1.7
541,003 - CSW01_02710 0.59 -0.2
541,092 - CSW01_02710 0.65 +0.2
541,101 + CSW01_02710 0.66 +1.4
541,123 - CSW01_02710 0.67 +1.2
541,191 + CSW01_02710 0.71 +1.6
541,205 + CSW01_02710 0.72 +0.8
541,205 + CSW01_02710 0.72 +0.9
541,219 + CSW01_02710 0.73 +1.0
541,219 + CSW01_02710 0.73 -0.1
541,281 - CSW01_02710 0.77 +0.7
541,310 + CSW01_02710 0.79 -0.6
541,356 - CSW01_02710 0.82 +1.4
541,371 + CSW01_02710 0.83 -1.9
541,376 + CSW01_02710 0.83 +0.5
541,379 - CSW01_02710 0.83 -1.4
541,414 + CSW01_02710 0.85 -2.1
541,421 - CSW01_02710 0.86 -1.6
541,427 - CSW01_02710 0.86 +1.9
541,427 - CSW01_02710 0.86 +0.1
541,427 - CSW01_02710 0.86 +1.4
541,451 - CSW01_02710 0.88 +0.6
541,479 + CSW01_02710 0.89 +0.4
541,527 - -1.4
541,591 + +0.5
541,598 + +0.7
541,598 + -0.2
541,598 + +1.5
541,599 - +0.7
541,676 + -0.6
541,676 + +1.1
541,676 + -1.9
541,684 - -0.3
541,684 - -0.5
541,731 + -3.5
541,751 + +1.9
541,751 + +2.0
541,753 + -0.1
541,759 - -0.2
541,770 + +0.8
541,797 + -0.7
541,818 - -1.2
541,962 + CSW01_02715 0.29 +0.5
541,980 - CSW01_02715 0.31 -0.6
542,047 + CSW01_02715 0.41 -2.9
542,052 + CSW01_02715 0.41 +0.7
542,060 + CSW01_02715 0.42 +1.5
542,071 + CSW01_02715 0.44 -3.1
542,125 - CSW01_02715 0.51 +0.2
542,125 - CSW01_02715 0.51 +0.9
542,151 - CSW01_02715 0.55 -0.4
542,151 - CSW01_02715 0.55 -1.4
542,195 + CSW01_02715 0.61 +0.4
542,203 + CSW01_02715 0.62 +0.8
542,203 + CSW01_02715 0.62 -3.0
542,211 - CSW01_02715 0.63 -2.7
542,211 - CSW01_02715 0.63 -1.5
542,235 + CSW01_02715 0.66 -0.7
542,269 - CSW01_02715 0.71 +1.0
542,282 + CSW01_02715 0.73 -3.4
542,282 + CSW01_02715 0.73 +0.3
542,292 + CSW01_02715 0.74 +1.0
542,292 + CSW01_02715 0.74 -0.5
542,292 + CSW01_02715 0.74 +0.3
542,292 + CSW01_02715 0.74 -0.2
542,300 - CSW01_02715 0.75 +0.6
542,300 - CSW01_02715 0.75 -2.5
542,300 - CSW01_02715 0.75 +0.1
542,307 + CSW01_02715 0.76 -3.5
542,315 - CSW01_02715 0.77 -1.0
542,315 - CSW01_02715 0.77 -2.9
542,319 + CSW01_02715 0.78 +1.9
542,327 - CSW01_02715 0.79 -0.7
542,334 - CSW01_02715 0.80 -2.8
542,336 + CSW01_02715 0.80 -2.4
542,336 + CSW01_02715 0.80 -1.8
542,371 + CSW01_02715 0.85 -1.0
542,395 + CSW01_02715 0.88 +1.2
542,411 + -1.0
542,411 + +1.5
542,412 + +1.7
542,412 + -0.6
542,425 - -2.5
542,432 + +0.6
542,450 + +0.6
542,457 + +0.4
542,457 - -0.3
542,472 + +1.1
542,480 - -1.1
542,513 + +0.2
542,513 + +1.1
542,521 + -2.8
542,536 - +0.3
542,579 + +1.5
542,580 + +0.8
542,580 + -0.6
542,581 + -1.3
542,585 + +2.8
542,585 + -2.1
542,585 + -0.4
542,585 + -1.7
542,588 - +0.4
542,588 - -2.3
542,588 - +0.6
542,593 - -0.0
542,617 + +0.8
542,632 + +1.3
542,775 - +1.5
542,793 - -3.3
542,989 + +0.6
542,997 - -1.3
543,011 - +1.1
543,046 - -0.4
543,057 - -0.2
543,057 - +0.5
543,104 + -1.2
543,104 + -0.5
543,104 + +0.8
543,104 + -0.8
543,104 + +0.1
543,226 - CSW01_02720 0.15 -0.1
543,228 - CSW01_02720 0.16 -0.4
543,257 - CSW01_02720 0.19 -1.8
543,351 + CSW01_02720 0.31 -0.5
543,351 + CSW01_02720 0.31 +0.5
543,351 + CSW01_02720 0.31 -0.8
543,364 + CSW01_02720 0.32 +0.7
543,364 + CSW01_02720 0.32 -0.9
543,374 + CSW01_02720 0.33 -2.4
543,379 + CSW01_02720 0.34 +1.5
543,386 + CSW01_02720 0.35 +0.0
543,387 - CSW01_02720 0.35 +0.3
543,392 - CSW01_02720 0.36 -0.4
543,396 - CSW01_02720 0.36 -2.7
543,396 - CSW01_02720 0.36 +1.3

Or see this region's nucleotide sequence