Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02100

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02090 and CSW01_02095 are separated by 291 nucleotidesCSW01_02095 and CSW01_02100 are separated by 114 nucleotidesCSW01_02100 and CSW01_02105 are separated by 12 nucleotides CSW01_02090: CSW01_02090 - helix-turn-helix transcriptional regulator, at 420,419 to 421,063 _02090 CSW01_02095: CSW01_02095 - ssDNA-binding protein, at 421,355 to 421,888 _02095 CSW01_02100: CSW01_02100 - RNase E specificity factor CsrD, at 422,003 to 424,024 _02100 CSW01_02105: CSW01_02105 - MSHA biogenesis protein MshI, at 424,037 to 425,476 _02105 Position (kb) 422 423 424 425Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 421.016 kb on - strandat 421.144 kb on + strandat 421.157 kb on + strandat 421.165 kb on - strandat 421.269 kb on - strandat 421.269 kb on - strandat 421.953 kb on + strandat 421.961 kb on + strandat 421.964 kb on - strandat 421.993 kb on + strandat 422.001 kb on - strandat 422.002 kb on - strandat 422.006 kb on + strandat 422.016 kb on + strandat 422.017 kb on + strandat 422.024 kb on - strandat 422.024 kb on - strandat 422.028 kb on + strandat 422.028 kb on + strandat 422.028 kb on + strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.074 kb on + strandat 422.082 kb on - strandat 422.098 kb on - strandat 422.107 kb on + strandat 422.134 kb on + strandat 422.134 kb on + strandat 422.141 kb on - strandat 422.142 kb on - strandat 422.168 kb on - strandat 422.208 kb on + strand, within CSW01_02100at 422.208 kb on + strand, within CSW01_02100at 422.216 kb on - strand, within CSW01_02100at 422.221 kb on - strand, within CSW01_02100at 422.271 kb on + strand, within CSW01_02100at 422.309 kb on + strand, within CSW01_02100at 422.397 kb on + strand, within CSW01_02100at 422.426 kb on - strand, within CSW01_02100at 422.426 kb on - strand, within CSW01_02100at 422.453 kb on - strand, within CSW01_02100at 422.453 kb on - strand, within CSW01_02100at 422.453 kb on - strand, within CSW01_02100at 422.540 kb on - strand, within CSW01_02100at 422.615 kb on + strand, within CSW01_02100at 422.615 kb on + strand, within CSW01_02100at 422.615 kb on + strand, within CSW01_02100at 422.660 kb on - strand, within CSW01_02100at 422.742 kb on - strand, within CSW01_02100at 422.764 kb on + strand, within CSW01_02100at 422.802 kb on - strand, within CSW01_02100at 422.809 kb on + strand, within CSW01_02100at 422.809 kb on + strand, within CSW01_02100at 422.817 kb on - strand, within CSW01_02100at 422.840 kb on - strand, within CSW01_02100at 422.841 kb on - strand, within CSW01_02100at 422.867 kb on - strand, within CSW01_02100at 422.875 kb on + strand, within CSW01_02100at 422.886 kb on + strand, within CSW01_02100at 422.891 kb on + strand, within CSW01_02100at 422.891 kb on + strand, within CSW01_02100at 422.894 kb on - strand, within CSW01_02100at 422.899 kb on - strand, within CSW01_02100at 422.899 kb on - strand, within CSW01_02100at 422.899 kb on - strand, within CSW01_02100at 422.933 kb on - strand, within CSW01_02100at 422.933 kb on - strand, within CSW01_02100at 422.933 kb on - strand, within CSW01_02100at 422.947 kb on + strand, within CSW01_02100at 422.947 kb on + strand, within CSW01_02100at 422.947 kb on + strand, within CSW01_02100at 422.947 kb on + strand, within CSW01_02100at 422.947 kb on + strand, within CSW01_02100at 422.955 kb on - strand, within CSW01_02100at 422.955 kb on - strand, within CSW01_02100at 422.955 kb on - strand, within CSW01_02100at 422.955 kb on - strand, within CSW01_02100at 422.955 kb on - strand, within CSW01_02100at 422.955 kb on - strand, within CSW01_02100at 422.955 kb on - strand, within CSW01_02100at 422.955 kb on - strand, within CSW01_02100at 422.955 kb on - strand, within CSW01_02100at 422.962 kb on + strand, within CSW01_02100at 423.016 kb on + strand, within CSW01_02100at 423.083 kb on + strand, within CSW01_02100at 423.091 kb on - strand, within CSW01_02100at 423.112 kb on + strand, within CSW01_02100at 423.112 kb on + strand, within CSW01_02100at 423.112 kb on + strand, within CSW01_02100at 423.120 kb on - strand, within CSW01_02100at 423.137 kb on + strand, within CSW01_02100at 423.147 kb on + strand, within CSW01_02100at 423.147 kb on + strand, within CSW01_02100at 423.155 kb on - strand, within CSW01_02100at 423.184 kb on - strand, within CSW01_02100at 423.271 kb on - strand, within CSW01_02100at 423.414 kb on + strand, within CSW01_02100at 423.415 kb on - strand, within CSW01_02100at 423.430 kb on - strand, within CSW01_02100at 423.430 kb on - strand, within CSW01_02100at 423.430 kb on - strand, within CSW01_02100at 423.453 kb on + strand, within CSW01_02100at 423.453 kb on + strand, within CSW01_02100at 423.453 kb on + strand, within CSW01_02100at 423.453 kb on + strand, within CSW01_02100at 423.461 kb on - strand, within CSW01_02100at 423.461 kb on - strand, within CSW01_02100at 423.466 kb on - strand, within CSW01_02100at 423.696 kb on + strand, within CSW01_02100at 423.729 kb on + strand, within CSW01_02100at 423.737 kb on - strand, within CSW01_02100at 423.739 kb on + strand, within CSW01_02100at 423.855 kb on + strandat 423.857 kb on + strandat 423.857 kb on + strandat 423.857 kb on + strandat 423.881 kb on - strandat 423.899 kb on + strandat 423.907 kb on - strandat 423.907 kb on - strandat 423.907 kb on - strandat 423.907 kb on - strandat 423.923 kb on + strandat 423.939 kb on - strandat 423.981 kb on + strandat 423.981 kb on + strandat 423.983 kb on + strandat 423.990 kb on - strandat 424.027 kb on + strandat 424.053 kb on + strandat 424.071 kb on + strandat 424.071 kb on + strandat 424.079 kb on - strandat 424.080 kb on - strandat 424.093 kb on + strandat 424.093 kb on + strandat 424.093 kb on + strandat 424.101 kb on - strandat 424.126 kb on + strandat 424.128 kb on - strandat 424.128 kb on - strandat 424.134 kb on - strandat 424.220 kb on + strand, within CSW01_02105at 424.220 kb on + strand, within CSW01_02105at 424.228 kb on - strand, within CSW01_02105at 424.228 kb on - strand, within CSW01_02105at 424.229 kb on + strand, within CSW01_02105at 424.239 kb on + strand, within CSW01_02105at 424.252 kb on - strand, within CSW01_02105at 424.285 kb on + strand, within CSW01_02105at 424.285 kb on + strand, within CSW01_02105at 424.285 kb on + strand, within CSW01_02105at 424.285 kb on + strand, within CSW01_02105at 424.285 kb on + strand, within CSW01_02105at 424.293 kb on - strand, within CSW01_02105at 424.345 kb on - strand, within CSW01_02105at 424.385 kb on + strand, within CSW01_02105at 424.385 kb on + strand, within CSW01_02105at 424.385 kb on + strand, within CSW01_02105at 424.389 kb on - strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.404 kb on - strand, within CSW01_02105at 424.411 kb on - strand, within CSW01_02105at 424.418 kb on - strand, within CSW01_02105at 424.433 kb on + strand, within CSW01_02105at 424.449 kb on + strand, within CSW01_02105at 424.474 kb on - strand, within CSW01_02105at 424.474 kb on - strand, within CSW01_02105at 424.574 kb on - strand, within CSW01_02105at 424.574 kb on - strand, within CSW01_02105at 424.605 kb on - strand, within CSW01_02105at 424.610 kb on - strand, within CSW01_02105at 424.685 kb on + strand, within CSW01_02105at 424.693 kb on - strand, within CSW01_02105at 424.693 kb on - strand, within CSW01_02105at 424.700 kb on + strand, within CSW01_02105at 424.708 kb on - strand, within CSW01_02105at 424.720 kb on + strand, within CSW01_02105at 424.720 kb on + strand, within CSW01_02105at 424.728 kb on - strand, within CSW01_02105at 424.734 kb on + strand, within CSW01_02105at 424.734 kb on + strand, within CSW01_02105at 424.734 kb on + strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.743 kb on + strand, within CSW01_02105at 424.778 kb on + strand, within CSW01_02105at 424.801 kb on + strand, within CSW01_02105at 424.801 kb on + strand, within CSW01_02105at 424.818 kb on + strand, within CSW01_02105at 424.818 kb on + strand, within CSW01_02105at 424.826 kb on - strand, within CSW01_02105at 424.826 kb on - strand, within CSW01_02105at 424.964 kb on + strand, within CSW01_02105at 424.973 kb on - strand, within CSW01_02105at 424.982 kb on + strand, within CSW01_02105at 425.003 kb on + strand, within CSW01_02105at 425.006 kb on - strand, within CSW01_02105

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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421,016 - -0.5
421,144 + +0.1
421,157 + +0.6
421,165 - -1.0
421,269 - -4.1
421,269 - -3.6
421,953 + -1.7
421,961 + +1.6
421,964 - +0.1
421,993 + +0.9
422,001 - -0.1
422,002 - -0.6
422,006 + -0.1
422,016 + -0.3
422,017 + -0.8
422,024 - -4.8
422,024 - -0.9
422,028 + -0.0
422,028 + -0.4
422,028 + -0.4
422,036 - -2.0
422,036 - +0.6
422,036 - +0.2
422,036 - -1.1
422,036 - -3.3
422,074 + -0.6
422,082 - -2.4
422,098 - +0.6
422,107 + +0.2
422,134 + +0.6
422,134 + -0.0
422,141 - -3.0
422,142 - -2.3
422,168 - -4.2
422,208 + CSW01_02100 0.10 -4.0
422,208 + CSW01_02100 0.10 -0.5
422,216 - CSW01_02100 0.11 -0.8
422,221 - CSW01_02100 0.11 -0.4
422,271 + CSW01_02100 0.13 -1.5
422,309 + CSW01_02100 0.15 -3.3
422,397 + CSW01_02100 0.19 +0.9
422,426 - CSW01_02100 0.21 -3.2
422,426 - CSW01_02100 0.21 -2.4
422,453 - CSW01_02100 0.22 +0.3
422,453 - CSW01_02100 0.22 -0.8
422,453 - CSW01_02100 0.22 +0.2
422,540 - CSW01_02100 0.27 -1.0
422,615 + CSW01_02100 0.30 -3.5
422,615 + CSW01_02100 0.30 -4.2
422,615 + CSW01_02100 0.30 -1.1
422,660 - CSW01_02100 0.32 -3.3
422,742 - CSW01_02100 0.37 -3.9
422,764 + CSW01_02100 0.38 -3.2
422,802 - CSW01_02100 0.40 -0.2
422,809 + CSW01_02100 0.40 -2.5
422,809 + CSW01_02100 0.40 +0.9
422,817 - CSW01_02100 0.40 -0.8
422,840 - CSW01_02100 0.41 +0.4
422,841 - CSW01_02100 0.41 +0.1
422,867 - CSW01_02100 0.43 +1.8
422,875 + CSW01_02100 0.43 -0.3
422,886 + CSW01_02100 0.44 -2.9
422,891 + CSW01_02100 0.44 +0.0
422,891 + CSW01_02100 0.44 -1.0
422,894 - CSW01_02100 0.44 -2.6
422,899 - CSW01_02100 0.44 +1.2
422,899 - CSW01_02100 0.44 +0.2
422,899 - CSW01_02100 0.44 -1.4
422,933 - CSW01_02100 0.46 -1.8
422,933 - CSW01_02100 0.46 -0.4
422,933 - CSW01_02100 0.46 -0.1
422,947 + CSW01_02100 0.47 +0.5
422,947 + CSW01_02100 0.47 +0.3
422,947 + CSW01_02100 0.47 +0.1
422,947 + CSW01_02100 0.47 -1.6
422,947 + CSW01_02100 0.47 +1.6
422,955 - CSW01_02100 0.47 -1.8
422,955 - CSW01_02100 0.47 +0.5
422,955 - CSW01_02100 0.47 +0.3
422,955 - CSW01_02100 0.47 +0.7
422,955 - CSW01_02100 0.47 -1.7
422,955 - CSW01_02100 0.47 -3.8
422,955 - CSW01_02100 0.47 +0.7
422,955 - CSW01_02100 0.47 -0.5
422,955 - CSW01_02100 0.47 -2.1
422,962 + CSW01_02100 0.47 -2.1
423,016 + CSW01_02100 0.50 -3.8
423,083 + CSW01_02100 0.53 +0.0
423,091 - CSW01_02100 0.54 +2.2
423,112 + CSW01_02100 0.55 -3.5
423,112 + CSW01_02100 0.55 -3.2
423,112 + CSW01_02100 0.55 +0.8
423,120 - CSW01_02100 0.55 -1.5
423,137 + CSW01_02100 0.56 +1.9
423,147 + CSW01_02100 0.57 -2.8
423,147 + CSW01_02100 0.57 +1.2
423,155 - CSW01_02100 0.57 +0.3
423,184 - CSW01_02100 0.58 -2.6
423,271 - CSW01_02100 0.63 -3.7
423,414 + CSW01_02100 0.70 +1.9
423,415 - CSW01_02100 0.70 -0.6
423,430 - CSW01_02100 0.71 -2.0
423,430 - CSW01_02100 0.71 -1.0
423,430 - CSW01_02100 0.71 +0.3
423,453 + CSW01_02100 0.72 -0.4
423,453 + CSW01_02100 0.72 +0.4
423,453 + CSW01_02100 0.72 +0.5
423,453 + CSW01_02100 0.72 +0.2
423,461 - CSW01_02100 0.72 +0.5
423,461 - CSW01_02100 0.72 -0.3
423,466 - CSW01_02100 0.72 -0.2
423,696 + CSW01_02100 0.84 +1.3
423,729 + CSW01_02100 0.85 -1.5
423,737 - CSW01_02100 0.86 -3.1
423,739 + CSW01_02100 0.86 -1.4
423,855 + +0.6
423,857 + -2.8
423,857 + +1.0
423,857 + -0.6
423,881 - -1.8
423,899 + -2.8
423,907 - -0.7
423,907 - -0.7
423,907 - -1.6
423,907 - -2.0
423,923 + -0.8
423,939 - +0.8
423,981 + +1.3
423,981 + +1.0
423,983 + -0.9
423,990 - -0.4
424,027 + +1.7
424,053 + -1.4
424,071 + -2.5
424,071 + -0.8
424,079 - -0.2
424,080 - +0.4
424,093 + -2.7
424,093 + +1.7
424,093 + -3.0
424,101 - +0.4
424,126 + -0.7
424,128 - +0.4
424,128 - +0.6
424,134 - +0.1
424,220 + CSW01_02105 0.13 -1.4
424,220 + CSW01_02105 0.13 +1.1
424,228 - CSW01_02105 0.13 -2.2
424,228 - CSW01_02105 0.13 -2.7
424,229 + CSW01_02105 0.13 -0.4
424,239 + CSW01_02105 0.14 +0.3
424,252 - CSW01_02105 0.15 +1.0
424,285 + CSW01_02105 0.17 -1.8
424,285 + CSW01_02105 0.17 +1.5
424,285 + CSW01_02105 0.17 -1.5
424,285 + CSW01_02105 0.17 -1.8
424,285 + CSW01_02105 0.17 +1.0
424,293 - CSW01_02105 0.18 +0.7
424,345 - CSW01_02105 0.21 -0.0
424,385 + CSW01_02105 0.24 +0.2
424,385 + CSW01_02105 0.24 +0.2
424,385 + CSW01_02105 0.24 -2.3
424,389 - CSW01_02105 0.24 +0.1
424,403 + CSW01_02105 0.25 +0.1
424,403 + CSW01_02105 0.25 +1.1
424,403 + CSW01_02105 0.25 -3.9
424,403 + CSW01_02105 0.25 +0.2
424,403 + CSW01_02105 0.25 -4.8
424,403 + CSW01_02105 0.25 -1.0
424,404 - CSW01_02105 0.25 +2.2
424,411 - CSW01_02105 0.26 +1.1
424,418 - CSW01_02105 0.26 -0.5
424,433 + CSW01_02105 0.28 -0.3
424,449 + CSW01_02105 0.29 -0.5
424,474 - CSW01_02105 0.30 +0.8
424,474 - CSW01_02105 0.30 -2.5
424,574 - CSW01_02105 0.37 -1.7
424,574 - CSW01_02105 0.37 +0.3
424,605 - CSW01_02105 0.39 -0.1
424,610 - CSW01_02105 0.40 +1.2
424,685 + CSW01_02105 0.45 +0.2
424,693 - CSW01_02105 0.46 -4.8
424,693 - CSW01_02105 0.46 -0.3
424,700 + CSW01_02105 0.46 -2.3
424,708 - CSW01_02105 0.47 -3.6
424,720 + CSW01_02105 0.47 -1.7
424,720 + CSW01_02105 0.47 +0.4
424,728 - CSW01_02105 0.48 +0.6
424,734 + CSW01_02105 0.48 -3.8
424,734 + CSW01_02105 0.48 +0.6
424,734 + CSW01_02105 0.48 -1.8
424,742 - CSW01_02105 0.49 -1.3
424,742 - CSW01_02105 0.49 -0.1
424,742 - CSW01_02105 0.49 -3.3
424,742 - CSW01_02105 0.49 -0.6
424,743 + CSW01_02105 0.49 -0.3
424,778 + CSW01_02105 0.51 -3.6
424,801 + CSW01_02105 0.53 +0.4
424,801 + CSW01_02105 0.53 -3.4
424,818 + CSW01_02105 0.54 +0.2
424,818 + CSW01_02105 0.54 -0.1
424,826 - CSW01_02105 0.55 +0.5
424,826 - CSW01_02105 0.55 -3.5
424,964 + CSW01_02105 0.64 -1.9
424,973 - CSW01_02105 0.65 +0.5
424,982 + CSW01_02105 0.66 -0.9
425,003 + CSW01_02105 0.67 +0.9
425,006 - CSW01_02105 0.67 +1.0

Or see this region's nucleotide sequence