Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02090 and CSW01_02095 are separated by 291 nucleotides CSW01_02095 and CSW01_02100 are separated by 114 nucleotides CSW01_02100 and CSW01_02105 are separated by 12 nucleotides
CSW01_02090: CSW01_02090 - helix-turn-helix transcriptional regulator, at 420,419 to 421,063
_02090
CSW01_02095: CSW01_02095 - ssDNA-binding protein, at 421,355 to 421,888
_02095
CSW01_02100: CSW01_02100 - RNase E specificity factor CsrD, at 422,003 to 424,024
_02100
CSW01_02105: CSW01_02105 - MSHA biogenesis protein MshI, at 424,037 to 425,476
_02105
Position (kb)
422
423
424
425 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 421.016 kb on - strand at 421.144 kb on + strand at 421.157 kb on + strand at 421.165 kb on - strand at 421.269 kb on - strand at 421.269 kb on - strand at 421.953 kb on + strand at 421.961 kb on + strand at 421.964 kb on - strand at 421.993 kb on + strand at 422.001 kb on - strand at 422.002 kb on - strand at 422.006 kb on + strand at 422.016 kb on + strand at 422.017 kb on + strand at 422.024 kb on - strand at 422.024 kb on - strand at 422.028 kb on + strand at 422.028 kb on + strand at 422.028 kb on + strand at 422.036 kb on - strand at 422.036 kb on - strand at 422.036 kb on - strand at 422.036 kb on - strand at 422.036 kb on - strand at 422.074 kb on + strand at 422.082 kb on - strand at 422.098 kb on - strand at 422.107 kb on + strand at 422.134 kb on + strand at 422.134 kb on + strand at 422.141 kb on - strand at 422.142 kb on - strand at 422.168 kb on - strand at 422.208 kb on + strand, within CSW01_02100 at 422.208 kb on + strand, within CSW01_02100 at 422.216 kb on - strand, within CSW01_02100 at 422.221 kb on - strand, within CSW01_02100 at 422.271 kb on + strand, within CSW01_02100 at 422.309 kb on + strand, within CSW01_02100 at 422.397 kb on + strand, within CSW01_02100 at 422.426 kb on - strand, within CSW01_02100 at 422.426 kb on - strand, within CSW01_02100 at 422.453 kb on - strand, within CSW01_02100 at 422.453 kb on - strand, within CSW01_02100 at 422.453 kb on - strand, within CSW01_02100 at 422.540 kb on - strand, within CSW01_02100 at 422.615 kb on + strand, within CSW01_02100 at 422.615 kb on + strand, within CSW01_02100 at 422.615 kb on + strand, within CSW01_02100 at 422.660 kb on - strand, within CSW01_02100 at 422.742 kb on - strand, within CSW01_02100 at 422.764 kb on + strand, within CSW01_02100 at 422.802 kb on - strand, within CSW01_02100 at 422.809 kb on + strand, within CSW01_02100 at 422.809 kb on + strand, within CSW01_02100 at 422.817 kb on - strand, within CSW01_02100 at 422.840 kb on - strand, within CSW01_02100 at 422.841 kb on - strand, within CSW01_02100 at 422.867 kb on - strand, within CSW01_02100 at 422.875 kb on + strand, within CSW01_02100 at 422.886 kb on + strand, within CSW01_02100 at 422.891 kb on + strand, within CSW01_02100 at 422.891 kb on + strand, within CSW01_02100 at 422.894 kb on - strand, within CSW01_02100 at 422.899 kb on - strand, within CSW01_02100 at 422.899 kb on - strand, within CSW01_02100 at 422.899 kb on - strand, within CSW01_02100 at 422.933 kb on - strand, within CSW01_02100 at 422.933 kb on - strand, within CSW01_02100 at 422.933 kb on - strand, within CSW01_02100 at 422.947 kb on + strand, within CSW01_02100 at 422.947 kb on + strand, within CSW01_02100 at 422.947 kb on + strand, within CSW01_02100 at 422.947 kb on + strand, within CSW01_02100 at 422.947 kb on + strand, within CSW01_02100 at 422.955 kb on - strand, within CSW01_02100 at 422.955 kb on - strand, within CSW01_02100 at 422.955 kb on - strand, within CSW01_02100 at 422.955 kb on - strand, within CSW01_02100 at 422.955 kb on - strand, within CSW01_02100 at 422.955 kb on - strand, within CSW01_02100 at 422.955 kb on - strand, within CSW01_02100 at 422.955 kb on - strand, within CSW01_02100 at 422.955 kb on - strand, within CSW01_02100 at 422.962 kb on + strand, within CSW01_02100 at 423.016 kb on + strand, within CSW01_02100 at 423.083 kb on + strand, within CSW01_02100 at 423.091 kb on - strand, within CSW01_02100 at 423.112 kb on + strand, within CSW01_02100 at 423.112 kb on + strand, within CSW01_02100 at 423.112 kb on + strand, within CSW01_02100 at 423.120 kb on - strand, within CSW01_02100 at 423.137 kb on + strand, within CSW01_02100 at 423.147 kb on + strand, within CSW01_02100 at 423.147 kb on + strand, within CSW01_02100 at 423.155 kb on - strand, within CSW01_02100 at 423.184 kb on - strand, within CSW01_02100 at 423.271 kb on - strand, within CSW01_02100 at 423.414 kb on + strand, within CSW01_02100 at 423.415 kb on - strand, within CSW01_02100 at 423.430 kb on - strand, within CSW01_02100 at 423.430 kb on - strand, within CSW01_02100 at 423.430 kb on - strand, within CSW01_02100 at 423.453 kb on + strand, within CSW01_02100 at 423.453 kb on + strand, within CSW01_02100 at 423.453 kb on + strand, within CSW01_02100 at 423.453 kb on + strand, within CSW01_02100 at 423.461 kb on - strand, within CSW01_02100 at 423.461 kb on - strand, within CSW01_02100 at 423.466 kb on - strand, within CSW01_02100 at 423.696 kb on + strand, within CSW01_02100 at 423.729 kb on + strand, within CSW01_02100 at 423.737 kb on - strand, within CSW01_02100 at 423.739 kb on + strand, within CSW01_02100 at 423.855 kb on + strand at 423.857 kb on + strand at 423.857 kb on + strand at 423.857 kb on + strand at 423.881 kb on - strand at 423.899 kb on + strand at 423.907 kb on - strand at 423.907 kb on - strand at 423.907 kb on - strand at 423.907 kb on - strand at 423.923 kb on + strand at 423.939 kb on - strand at 423.981 kb on + strand at 423.981 kb on + strand at 423.983 kb on + strand at 423.990 kb on - strand at 424.027 kb on + strand at 424.053 kb on + strand at 424.071 kb on + strand at 424.071 kb on + strand at 424.079 kb on - strand at 424.080 kb on - strand at 424.093 kb on + strand at 424.093 kb on + strand at 424.093 kb on + strand at 424.101 kb on - strand at 424.126 kb on + strand at 424.128 kb on - strand at 424.128 kb on - strand at 424.134 kb on - strand at 424.220 kb on + strand, within CSW01_02105 at 424.220 kb on + strand, within CSW01_02105 at 424.228 kb on - strand, within CSW01_02105 at 424.228 kb on - strand, within CSW01_02105 at 424.229 kb on + strand, within CSW01_02105 at 424.239 kb on + strand, within CSW01_02105 at 424.252 kb on - strand, within CSW01_02105 at 424.285 kb on + strand, within CSW01_02105 at 424.285 kb on + strand, within CSW01_02105 at 424.285 kb on + strand, within CSW01_02105 at 424.285 kb on + strand, within CSW01_02105 at 424.285 kb on + strand, within CSW01_02105 at 424.293 kb on - strand, within CSW01_02105 at 424.345 kb on - strand, within CSW01_02105 at 424.385 kb on + strand, within CSW01_02105 at 424.385 kb on + strand, within CSW01_02105 at 424.385 kb on + strand, within CSW01_02105 at 424.389 kb on - strand, within CSW01_02105 at 424.403 kb on + strand, within CSW01_02105 at 424.403 kb on + strand, within CSW01_02105 at 424.403 kb on + strand, within CSW01_02105 at 424.403 kb on + strand, within CSW01_02105 at 424.403 kb on + strand, within CSW01_02105 at 424.403 kb on + strand, within CSW01_02105 at 424.404 kb on - strand, within CSW01_02105 at 424.411 kb on - strand, within CSW01_02105 at 424.418 kb on - strand, within CSW01_02105 at 424.433 kb on + strand, within CSW01_02105 at 424.449 kb on + strand, within CSW01_02105 at 424.474 kb on - strand, within CSW01_02105 at 424.474 kb on - strand, within CSW01_02105 at 424.574 kb on - strand, within CSW01_02105 at 424.574 kb on - strand, within CSW01_02105 at 424.605 kb on - strand, within CSW01_02105 at 424.610 kb on - strand, within CSW01_02105 at 424.685 kb on + strand, within CSW01_02105 at 424.693 kb on - strand, within CSW01_02105 at 424.693 kb on - strand, within CSW01_02105 at 424.700 kb on + strand, within CSW01_02105 at 424.708 kb on - strand, within CSW01_02105 at 424.720 kb on + strand, within CSW01_02105 at 424.720 kb on + strand, within CSW01_02105 at 424.728 kb on - strand, within CSW01_02105 at 424.734 kb on + strand, within CSW01_02105 at 424.734 kb on + strand, within CSW01_02105 at 424.734 kb on + strand, within CSW01_02105 at 424.742 kb on - strand, within CSW01_02105 at 424.742 kb on - strand, within CSW01_02105 at 424.742 kb on - strand, within CSW01_02105 at 424.742 kb on - strand, within CSW01_02105 at 424.743 kb on + strand, within CSW01_02105 at 424.778 kb on + strand, within CSW01_02105 at 424.801 kb on + strand, within CSW01_02105 at 424.801 kb on + strand, within CSW01_02105 at 424.818 kb on + strand, within CSW01_02105 at 424.818 kb on + strand, within CSW01_02105 at 424.826 kb on - strand, within CSW01_02105 at 424.826 kb on - strand, within CSW01_02105 at 424.964 kb on + strand, within CSW01_02105 at 424.973 kb on - strand, within CSW01_02105 at 424.982 kb on + strand, within CSW01_02105 at 425.003 kb on + strand, within CSW01_02105 at 425.006 kb on - strand, within CSW01_02105
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 421,016 - -0.5 421,144 + +0.1 421,157 + +0.6 421,165 - -1.0 421,269 - -4.1 421,269 - -3.6 421,953 + -1.7 421,961 + +1.6 421,964 - +0.1 421,993 + +0.9 422,001 - -0.1 422,002 - -0.6 422,006 + -0.1 422,016 + -0.3 422,017 + -0.8 422,024 - -4.8 422,024 - -0.9 422,028 + -0.0 422,028 + -0.4 422,028 + -0.4 422,036 - -2.0 422,036 - +0.6 422,036 - +0.2 422,036 - -1.1 422,036 - -3.3 422,074 + -0.6 422,082 - -2.4 422,098 - +0.6 422,107 + +0.2 422,134 + +0.6 422,134 + -0.0 422,141 - -3.0 422,142 - -2.3 422,168 - -4.2 422,208 + CSW01_02100 0.10 -4.0 422,208 + CSW01_02100 0.10 -0.5 422,216 - CSW01_02100 0.11 -0.8 422,221 - CSW01_02100 0.11 -0.4 422,271 + CSW01_02100 0.13 -1.5 422,309 + CSW01_02100 0.15 -3.3 422,397 + CSW01_02100 0.19 +0.9 422,426 - CSW01_02100 0.21 -3.2 422,426 - CSW01_02100 0.21 -2.4 422,453 - CSW01_02100 0.22 +0.3 422,453 - CSW01_02100 0.22 -0.8 422,453 - CSW01_02100 0.22 +0.2 422,540 - CSW01_02100 0.27 -1.0 422,615 + CSW01_02100 0.30 -3.5 422,615 + CSW01_02100 0.30 -4.2 422,615 + CSW01_02100 0.30 -1.1 422,660 - CSW01_02100 0.32 -3.3 422,742 - CSW01_02100 0.37 -3.9 422,764 + CSW01_02100 0.38 -3.2 422,802 - CSW01_02100 0.40 -0.2 422,809 + CSW01_02100 0.40 -2.5 422,809 + CSW01_02100 0.40 +0.9 422,817 - CSW01_02100 0.40 -0.8 422,840 - CSW01_02100 0.41 +0.4 422,841 - CSW01_02100 0.41 +0.1 422,867 - CSW01_02100 0.43 +1.8 422,875 + CSW01_02100 0.43 -0.3 422,886 + CSW01_02100 0.44 -2.9 422,891 + CSW01_02100 0.44 +0.0 422,891 + CSW01_02100 0.44 -1.0 422,894 - CSW01_02100 0.44 -2.6 422,899 - CSW01_02100 0.44 +1.2 422,899 - CSW01_02100 0.44 +0.2 422,899 - CSW01_02100 0.44 -1.4 422,933 - CSW01_02100 0.46 -1.8 422,933 - CSW01_02100 0.46 -0.4 422,933 - CSW01_02100 0.46 -0.1 422,947 + CSW01_02100 0.47 +0.5 422,947 + CSW01_02100 0.47 +0.3 422,947 + CSW01_02100 0.47 +0.1 422,947 + CSW01_02100 0.47 -1.6 422,947 + CSW01_02100 0.47 +1.6 422,955 - CSW01_02100 0.47 -1.8 422,955 - CSW01_02100 0.47 +0.5 422,955 - CSW01_02100 0.47 +0.3 422,955 - CSW01_02100 0.47 +0.7 422,955 - CSW01_02100 0.47 -1.7 422,955 - CSW01_02100 0.47 -3.8 422,955 - CSW01_02100 0.47 +0.7 422,955 - CSW01_02100 0.47 -0.5 422,955 - CSW01_02100 0.47 -2.1 422,962 + CSW01_02100 0.47 -2.1 423,016 + CSW01_02100 0.50 -3.8 423,083 + CSW01_02100 0.53 +0.0 423,091 - CSW01_02100 0.54 +2.2 423,112 + CSW01_02100 0.55 -3.5 423,112 + CSW01_02100 0.55 -3.2 423,112 + CSW01_02100 0.55 +0.8 423,120 - CSW01_02100 0.55 -1.5 423,137 + CSW01_02100 0.56 +1.9 423,147 + CSW01_02100 0.57 -2.8 423,147 + CSW01_02100 0.57 +1.2 423,155 - CSW01_02100 0.57 +0.3 423,184 - CSW01_02100 0.58 -2.6 423,271 - CSW01_02100 0.63 -3.7 423,414 + CSW01_02100 0.70 +1.9 423,415 - CSW01_02100 0.70 -0.6 423,430 - CSW01_02100 0.71 -2.0 423,430 - CSW01_02100 0.71 -1.0 423,430 - CSW01_02100 0.71 +0.3 423,453 + CSW01_02100 0.72 -0.4 423,453 + CSW01_02100 0.72 +0.4 423,453 + CSW01_02100 0.72 +0.5 423,453 + CSW01_02100 0.72 +0.2 423,461 - CSW01_02100 0.72 +0.5 423,461 - CSW01_02100 0.72 -0.3 423,466 - CSW01_02100 0.72 -0.2 423,696 + CSW01_02100 0.84 +1.3 423,729 + CSW01_02100 0.85 -1.5 423,737 - CSW01_02100 0.86 -3.1 423,739 + CSW01_02100 0.86 -1.4 423,855 + +0.6 423,857 + -2.8 423,857 + +1.0 423,857 + -0.6 423,881 - -1.8 423,899 + -2.8 423,907 - -0.7 423,907 - -0.7 423,907 - -1.6 423,907 - -2.0 423,923 + -0.8 423,939 - +0.8 423,981 + +1.3 423,981 + +1.0 423,983 + -0.9 423,990 - -0.4 424,027 + +1.7 424,053 + -1.4 424,071 + -2.5 424,071 + -0.8 424,079 - -0.2 424,080 - +0.4 424,093 + -2.7 424,093 + +1.7 424,093 + -3.0 424,101 - +0.4 424,126 + -0.7 424,128 - +0.4 424,128 - +0.6 424,134 - +0.1 424,220 + CSW01_02105 0.13 -1.4 424,220 + CSW01_02105 0.13 +1.1 424,228 - CSW01_02105 0.13 -2.2 424,228 - CSW01_02105 0.13 -2.7 424,229 + CSW01_02105 0.13 -0.4 424,239 + CSW01_02105 0.14 +0.3 424,252 - CSW01_02105 0.15 +1.0 424,285 + CSW01_02105 0.17 -1.8 424,285 + CSW01_02105 0.17 +1.5 424,285 + CSW01_02105 0.17 -1.5 424,285 + CSW01_02105 0.17 -1.8 424,285 + CSW01_02105 0.17 +1.0 424,293 - CSW01_02105 0.18 +0.7 424,345 - CSW01_02105 0.21 -0.0 424,385 + CSW01_02105 0.24 +0.2 424,385 + CSW01_02105 0.24 +0.2 424,385 + CSW01_02105 0.24 -2.3 424,389 - CSW01_02105 0.24 +0.1 424,403 + CSW01_02105 0.25 +0.1 424,403 + CSW01_02105 0.25 +1.1 424,403 + CSW01_02105 0.25 -3.9 424,403 + CSW01_02105 0.25 +0.2 424,403 + CSW01_02105 0.25 -4.8 424,403 + CSW01_02105 0.25 -1.0 424,404 - CSW01_02105 0.25 +2.2 424,411 - CSW01_02105 0.26 +1.1 424,418 - CSW01_02105 0.26 -0.5 424,433 + CSW01_02105 0.28 -0.3 424,449 + CSW01_02105 0.29 -0.5 424,474 - CSW01_02105 0.30 +0.8 424,474 - CSW01_02105 0.30 -2.5 424,574 - CSW01_02105 0.37 -1.7 424,574 - CSW01_02105 0.37 +0.3 424,605 - CSW01_02105 0.39 -0.1 424,610 - CSW01_02105 0.40 +1.2 424,685 + CSW01_02105 0.45 +0.2 424,693 - CSW01_02105 0.46 -4.8 424,693 - CSW01_02105 0.46 -0.3 424,700 + CSW01_02105 0.46 -2.3 424,708 - CSW01_02105 0.47 -3.6 424,720 + CSW01_02105 0.47 -1.7 424,720 + CSW01_02105 0.47 +0.4 424,728 - CSW01_02105 0.48 +0.6 424,734 + CSW01_02105 0.48 -3.8 424,734 + CSW01_02105 0.48 +0.6 424,734 + CSW01_02105 0.48 -1.8 424,742 - CSW01_02105 0.49 -1.3 424,742 - CSW01_02105 0.49 -0.1 424,742 - CSW01_02105 0.49 -3.3 424,742 - CSW01_02105 0.49 -0.6 424,743 + CSW01_02105 0.49 -0.3 424,778 + CSW01_02105 0.51 -3.6 424,801 + CSW01_02105 0.53 +0.4 424,801 + CSW01_02105 0.53 -3.4 424,818 + CSW01_02105 0.54 +0.2 424,818 + CSW01_02105 0.54 -0.1 424,826 - CSW01_02105 0.55 +0.5 424,826 - CSW01_02105 0.55 -3.5 424,964 + CSW01_02105 0.64 -1.9 424,973 - CSW01_02105 0.65 +0.5 424,982 + CSW01_02105 0.66 -0.9 425,003 + CSW01_02105 0.67 +0.9 425,006 - CSW01_02105 0.67 +1.0
Or see this region's nucleotide sequence