Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01990

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01985 and CSW01_01990 are separated by 160 nucleotidesCSW01_01990 and CSW01_01995 are separated by 88 nucleotidesCSW01_01995 and CSW01_02000 overlap by 47 nucleotidesCSW01_02000 and CSW01_02005 overlap by 43 nucleotides CSW01_01985: CSW01_01985 - tRNA dihydrouridine(20/20a) synthase DusA, at 393,070 to 394,053 _01985 CSW01_01990: CSW01_01990 - envelope stress response protein PspG, at 394,214 to 394,426 _01990 CSW01_01995: CSW01_01995 - iron-hydroxamate ABC transporter substrate-binding protein, at 394,515 to 395,180 _01995 CSW01_02000: CSW01_02000 - Fe3+ hydroxamate ABC transporter substrate-binding protein, at 395,134 to 395,304 _02000 CSW01_02005: CSW01_02005 - hypothetical protein, at 395,262 to 395,531 _02005 Position (kb) 394 395Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 393.238 kb on - strand, within CSW01_01985at 393.293 kb on + strand, within CSW01_01985at 393.333 kb on + strand, within CSW01_01985at 393.586 kb on + strand, within CSW01_01985at 393.594 kb on - strand, within CSW01_01985at 393.690 kb on + strand, within CSW01_01985at 393.691 kb on + strand, within CSW01_01985at 393.696 kb on - strand, within CSW01_01985at 393.735 kb on - strand, within CSW01_01985at 393.835 kb on + strand, within CSW01_01985at 393.914 kb on + strand, within CSW01_01985at 393.914 kb on + strand, within CSW01_01985at 393.914 kb on + strand, within CSW01_01985at 393.922 kb on - strand, within CSW01_01985at 393.922 kb on - strand, within CSW01_01985at 393.922 kb on - strand, within CSW01_01985at 393.966 kb on - strandat 393.976 kb on - strandat 393.995 kb on + strandat 394.003 kb on - strandat 394.193 kb on + strandat 394.211 kb on - strandat 394.274 kb on + strand, within CSW01_01990at 394.274 kb on + strand, within CSW01_01990at 394.282 kb on - strand, within CSW01_01990at 394.282 kb on - strand, within CSW01_01990at 394.291 kb on - strand, within CSW01_01990at 394.335 kb on - strand, within CSW01_01990at 394.346 kb on + strand, within CSW01_01990at 394.346 kb on + strand, within CSW01_01990at 394.354 kb on - strand, within CSW01_01990at 394.354 kb on - strand, within CSW01_01990at 394.354 kb on - strand, within CSW01_01990at 394.354 kb on - strand, within CSW01_01990at 394.368 kb on - strand, within CSW01_01990at 394.416 kb on - strandat 394.432 kb on + strandat 394.455 kb on + strandat 394.504 kb on + strandat 394.512 kb on - strandat 394.544 kb on - strandat 394.549 kb on - strandat 394.589 kb on + strand, within CSW01_01995at 394.589 kb on + strand, within CSW01_01995at 394.597 kb on - strand, within CSW01_01995at 394.597 kb on - strand, within CSW01_01995at 394.597 kb on - strand, within CSW01_01995at 394.597 kb on - strand, within CSW01_01995at 394.599 kb on + strand, within CSW01_01995at 394.607 kb on - strand, within CSW01_01995at 394.676 kb on + strand, within CSW01_01995at 394.677 kb on - strand, within CSW01_01995at 394.730 kb on - strand, within CSW01_01995at 394.730 kb on - strand, within CSW01_01995at 394.816 kb on + strand, within CSW01_01995at 394.824 kb on - strand, within CSW01_01995at 394.826 kb on + strand, within CSW01_01995at 394.834 kb on + strand, within CSW01_01995at 394.842 kb on - strand, within CSW01_01995at 394.842 kb on - strand, within CSW01_01995at 395.083 kb on + strand, within CSW01_01995at 395.100 kb on - strand, within CSW01_01995at 395.109 kb on - strand, within CSW01_01995at 395.119 kb on - strandat 395.161 kb on - strandat 395.317 kb on + strand, within CSW01_02005at 395.332 kb on + strand, within CSW01_02005at 395.340 kb on - strand, within CSW01_02005at 395.361 kb on - strand, within CSW01_02005at 395.364 kb on - strand, within CSW01_02005at 395.368 kb on + strand, within CSW01_02005at 395.376 kb on - strand, within CSW01_02005at 395.376 kb on - strand, within CSW01_02005

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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393,238 - CSW01_01985 0.17 +0.5
393,293 + CSW01_01985 0.23 +0.8
393,333 + CSW01_01985 0.27 -2.1
393,586 + CSW01_01985 0.52 -4.0
393,594 - CSW01_01985 0.53 +0.9
393,690 + CSW01_01985 0.63 -1.3
393,691 + CSW01_01985 0.63 +0.4
393,696 - CSW01_01985 0.64 +1.4
393,735 - CSW01_01985 0.68 +0.5
393,835 + CSW01_01985 0.78 +0.5
393,914 + CSW01_01985 0.86 -1.2
393,914 + CSW01_01985 0.86 +1.5
393,914 + CSW01_01985 0.86 +0.7
393,922 - CSW01_01985 0.87 -1.7
393,922 - CSW01_01985 0.87 -0.7
393,922 - CSW01_01985 0.87 -1.6
393,966 - -0.1
393,976 - +0.1
393,995 + +0.5
394,003 - +0.3
394,193 + +0.7
394,211 - +1.0
394,274 + CSW01_01990 0.28 +0.5
394,274 + CSW01_01990 0.28 -3.7
394,282 - CSW01_01990 0.32 -2.5
394,282 - CSW01_01990 0.32 +0.5
394,291 - CSW01_01990 0.36 +1.1
394,335 - CSW01_01990 0.57 -3.4
394,346 + CSW01_01990 0.62 -1.2
394,346 + CSW01_01990 0.62 +0.4
394,354 - CSW01_01990 0.66 +0.3
394,354 - CSW01_01990 0.66 +0.4
394,354 - CSW01_01990 0.66 +0.5
394,354 - CSW01_01990 0.66 -0.8
394,368 - CSW01_01990 0.72 -2.2
394,416 - +0.4
394,432 + -2.2
394,455 + -0.1
394,504 + +0.4
394,512 - +0.9
394,544 - +0.4
394,549 - -2.0
394,589 + CSW01_01995 0.11 -2.6
394,589 + CSW01_01995 0.11 -0.7
394,597 - CSW01_01995 0.12 -0.2
394,597 - CSW01_01995 0.12 +1.3
394,597 - CSW01_01995 0.12 -3.3
394,597 - CSW01_01995 0.12 -2.0
394,599 + CSW01_01995 0.13 -3.6
394,607 - CSW01_01995 0.14 -1.1
394,676 + CSW01_01995 0.24 -1.3
394,677 - CSW01_01995 0.24 +0.8
394,730 - CSW01_01995 0.32 +0.4
394,730 - CSW01_01995 0.32 -0.1
394,816 + CSW01_01995 0.45 -0.1
394,824 - CSW01_01995 0.46 -2.6
394,826 + CSW01_01995 0.47 -4.2
394,834 + CSW01_01995 0.48 -3.9
394,842 - CSW01_01995 0.49 -1.6
394,842 - CSW01_01995 0.49 -3.6
395,083 + CSW01_01995 0.85 +0.4
395,100 - CSW01_01995 0.88 +0.4
395,109 - CSW01_01995 0.89 -2.0
395,119 - -0.6
395,161 - +1.4
395,317 + CSW01_02005 0.20 -3.8
395,332 + CSW01_02005 0.26 +0.0
395,340 - CSW01_02005 0.29 -1.1
395,361 - CSW01_02005 0.37 -1.5
395,364 - CSW01_02005 0.38 -0.4
395,368 + CSW01_02005 0.39 -0.8
395,376 - CSW01_02005 0.42 -4.1
395,376 - CSW01_02005 0.42 +0.1

Or see this region's nucleotide sequence