Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01480

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01470 and CSW01_01475 are separated by 153 nucleotidesCSW01_01475 and CSW01_01480 overlap by 4 nucleotidesCSW01_01480 and CSW01_01485 are separated by 76 nucleotides CSW01_01470: CSW01_01470 - permease, at 293,577 to 294,953 _01470 CSW01_01475: CSW01_01475 - gluconate kinase, at 295,107 to 295,622 _01475 CSW01_01480: CSW01_01480 - phosphogluconate dehydratase, at 295,619 to 297,415 _01480 CSW01_01485: CSW01_01485 - transcriptional regulator, at 297,492 to 298,490 _01485 Position (kb) 295 296 297 298Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 294.692 kb on - strand, within CSW01_01470at 294.724 kb on - strand, within CSW01_01470at 294.739 kb on + strand, within CSW01_01470at 294.817 kb on + strandat 294.934 kb on - strandat 294.968 kb on + strandat 295.099 kb on - strandat 295.136 kb on + strandat 295.221 kb on - strand, within CSW01_01475at 295.221 kb on - strand, within CSW01_01475at 295.245 kb on + strand, within CSW01_01475at 295.293 kb on - strand, within CSW01_01475at 295.347 kb on - strand, within CSW01_01475at 295.349 kb on - strand, within CSW01_01475at 295.426 kb on + strand, within CSW01_01475at 295.461 kb on + strand, within CSW01_01475at 295.461 kb on + strand, within CSW01_01475at 295.469 kb on - strand, within CSW01_01475at 295.469 kb on - strand, within CSW01_01475at 295.484 kb on + strand, within CSW01_01475at 295.509 kb on + strand, within CSW01_01475at 295.510 kb on + strand, within CSW01_01475at 295.510 kb on + strand, within CSW01_01475at 295.510 kb on - strand, within CSW01_01475at 295.518 kb on - strand, within CSW01_01475at 295.518 kb on - strand, within CSW01_01475at 295.520 kb on + strand, within CSW01_01475at 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.580 kb on + strandat 295.583 kb on - strandat 295.605 kb on + strandat 295.615 kb on - strandat 295.641 kb on + strandat 295.663 kb on + strandat 295.709 kb on - strandat 295.726 kb on + strandat 295.734 kb on + strandat 295.751 kb on + strandat 295.751 kb on + strandat 295.759 kb on - strandat 295.818 kb on + strand, within CSW01_01480at 295.847 kb on + strand, within CSW01_01480at 295.860 kb on - strand, within CSW01_01480at 295.861 kb on + strand, within CSW01_01480at 295.874 kb on - strand, within CSW01_01480at 295.876 kb on + strand, within CSW01_01480at 295.879 kb on - strand, within CSW01_01480at 295.879 kb on - strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.884 kb on - strand, within CSW01_01480at 295.884 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.909 kb on - strand, within CSW01_01480at 295.915 kb on + strand, within CSW01_01480at 295.964 kb on - strand, within CSW01_01480at 295.973 kb on + strand, within CSW01_01480at 296.018 kb on + strand, within CSW01_01480at 296.043 kb on + strand, within CSW01_01480at 296.051 kb on - strand, within CSW01_01480at 296.051 kb on - strand, within CSW01_01480at 296.127 kb on + strand, within CSW01_01480at 296.127 kb on - strand, within CSW01_01480at 296.227 kb on + strand, within CSW01_01480at 296.227 kb on - strand, within CSW01_01480at 296.235 kb on - strand, within CSW01_01480at 296.242 kb on + strand, within CSW01_01480at 296.242 kb on + strand, within CSW01_01480at 296.250 kb on - strand, within CSW01_01480at 296.250 kb on - strand, within CSW01_01480at 296.250 kb on - strand, within CSW01_01480at 296.254 kb on + strand, within CSW01_01480at 296.254 kb on + strand, within CSW01_01480at 296.260 kb on + strand, within CSW01_01480at 296.260 kb on + strand, within CSW01_01480at 296.262 kb on - strand, within CSW01_01480at 296.280 kb on + strand, within CSW01_01480at 296.333 kb on + strand, within CSW01_01480at 296.333 kb on + strand, within CSW01_01480at 296.333 kb on + strand, within CSW01_01480at 296.336 kb on - strand, within CSW01_01480at 296.433 kb on + strand, within CSW01_01480at 296.434 kb on - strand, within CSW01_01480at 296.438 kb on + strand, within CSW01_01480at 296.441 kb on - strand, within CSW01_01480at 296.443 kb on + strand, within CSW01_01480at 296.446 kb on - strand, within CSW01_01480at 296.451 kb on - strand, within CSW01_01480at 296.463 kb on - strand, within CSW01_01480at 296.463 kb on - strand, within CSW01_01480at 296.506 kb on + strand, within CSW01_01480at 296.509 kb on - strand, within CSW01_01480at 296.520 kb on + strand, within CSW01_01480at 296.524 kb on + strand, within CSW01_01480at 296.534 kb on + strand, within CSW01_01480at 296.534 kb on + strand, within CSW01_01480at 296.534 kb on + strand, within CSW01_01480at 296.542 kb on - strand, within CSW01_01480at 296.542 kb on - strand, within CSW01_01480at 296.589 kb on + strand, within CSW01_01480at 296.589 kb on + strand, within CSW01_01480at 296.597 kb on - strand, within CSW01_01480at 296.626 kb on + strand, within CSW01_01480at 296.633 kb on - strand, within CSW01_01480at 296.640 kb on + strand, within CSW01_01480at 296.643 kb on - strand, within CSW01_01480at 296.648 kb on + strand, within CSW01_01480at 296.667 kb on - strand, within CSW01_01480at 296.669 kb on - strand, within CSW01_01480at 296.684 kb on + strand, within CSW01_01480at 296.706 kb on + strand, within CSW01_01480at 296.729 kb on - strand, within CSW01_01480at 296.749 kb on + strand, within CSW01_01480at 296.757 kb on - strand, within CSW01_01480at 296.757 kb on - strand, within CSW01_01480at 296.757 kb on - strand, within CSW01_01480at 296.796 kb on + strand, within CSW01_01480at 296.796 kb on + strand, within CSW01_01480at 296.796 kb on + strand, within CSW01_01480at 296.804 kb on - strand, within CSW01_01480at 296.806 kb on + strand, within CSW01_01480at 296.985 kb on - strand, within CSW01_01480at 296.991 kb on + strand, within CSW01_01480at 296.999 kb on - strand, within CSW01_01480at 297.013 kb on + strand, within CSW01_01480at 297.032 kb on - strand, within CSW01_01480at 297.032 kb on - strand, within CSW01_01480at 297.043 kb on + strand, within CSW01_01480at 297.066 kb on + strand, within CSW01_01480at 297.066 kb on + strand, within CSW01_01480at 297.076 kb on + strand, within CSW01_01480at 297.084 kb on - strand, within CSW01_01480at 297.092 kb on + strand, within CSW01_01480at 297.118 kb on + strand, within CSW01_01480at 297.141 kb on - strand, within CSW01_01480at 297.141 kb on - strand, within CSW01_01480at 297.141 kb on - strand, within CSW01_01480at 297.221 kb on + strand, within CSW01_01480at 297.253 kb on + strandat 297.280 kb on - strandat 297.280 kb on - strandat 297.280 kb on - strandat 297.280 kb on - strandat 297.340 kb on - strandat 297.363 kb on - strandat 297.410 kb on - strandat 297.418 kb on - strandat 297.433 kb on + strandat 297.466 kb on + strandat 297.473 kb on + strandat 297.474 kb on - strandat 297.478 kb on + strandat 297.481 kb on + strandat 297.483 kb on + strandat 297.483 kb on + strandat 297.484 kb on + strandat 297.488 kb on + strandat 297.489 kb on + strandat 297.491 kb on + strandat 297.491 kb on - strandat 297.497 kb on - strandat 297.509 kb on - strandat 297.556 kb on + strandat 297.681 kb on + strand, within CSW01_01485at 297.689 kb on - strand, within CSW01_01485at 297.764 kb on - strand, within CSW01_01485at 297.764 kb on - strand, within CSW01_01485at 297.765 kb on + strand, within CSW01_01485at 297.811 kb on - strand, within CSW01_01485at 297.828 kb on - strand, within CSW01_01485at 297.860 kb on + strand, within CSW01_01485at 297.860 kb on + strand, within CSW01_01485at 297.910 kb on - strand, within CSW01_01485at 297.920 kb on + strand, within CSW01_01485at 298.037 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.115 kb on + strand, within CSW01_01485at 298.115 kb on + strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.130 kb on + strand, within CSW01_01485at 298.224 kb on - strand, within CSW01_01485at 298.229 kb on + strand, within CSW01_01485at 298.237 kb on - strand, within CSW01_01485at 298.237 kb on - strand, within CSW01_01485at 298.353 kb on - strand, within CSW01_01485at 298.377 kb on - strand, within CSW01_01485at 298.405 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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294,692 - CSW01_01470 0.81 -0.2
294,724 - CSW01_01470 0.83 -0.3
294,739 + CSW01_01470 0.84 -2.1
294,817 + +1.5
294,934 - -1.3
294,968 + -0.2
295,099 - -0.8
295,136 + +0.2
295,221 - CSW01_01475 0.22 -1.8
295,221 - CSW01_01475 0.22 +0.6
295,245 + CSW01_01475 0.27 -0.7
295,293 - CSW01_01475 0.36 +0.4
295,347 - CSW01_01475 0.47 -3.9
295,349 - CSW01_01475 0.47 +0.1
295,426 + CSW01_01475 0.62 -0.8
295,461 + CSW01_01475 0.69 -2.0
295,461 + CSW01_01475 0.69 -0.3
295,469 - CSW01_01475 0.70 -3.5
295,469 - CSW01_01475 0.70 -2.3
295,484 + CSW01_01475 0.73 +0.9
295,509 + CSW01_01475 0.78 +0.7
295,510 + CSW01_01475 0.78 +0.2
295,510 + CSW01_01475 0.78 +1.0
295,510 - CSW01_01475 0.78 -0.0
295,518 - CSW01_01475 0.80 +1.3
295,518 - CSW01_01475 0.80 +1.6
295,520 + CSW01_01475 0.80 +2.5
295,575 + +0.2
295,575 + +0.3
295,575 + -3.9
295,575 + -1.4
295,575 + -1.5
295,575 + +1.3
295,580 + -0.2
295,583 - -3.4
295,605 + +0.1
295,615 - +1.7
295,641 + -0.9
295,663 + +0.6
295,709 - -3.0
295,726 + -1.4
295,734 + +0.7
295,751 + +0.7
295,751 + -2.0
295,759 - -1.2
295,818 + CSW01_01480 0.11 +1.5
295,847 + CSW01_01480 0.13 +0.4
295,860 - CSW01_01480 0.13 -2.9
295,861 + CSW01_01480 0.13 -0.8
295,874 - CSW01_01480 0.14 -1.8
295,876 + CSW01_01480 0.14 +1.0
295,879 - CSW01_01480 0.14 +1.1
295,879 - CSW01_01480 0.14 +0.1
295,881 + CSW01_01480 0.15 +0.5
295,881 + CSW01_01480 0.15 +2.4
295,881 + CSW01_01480 0.15 -3.2
295,881 + CSW01_01480 0.15 +0.6
295,881 + CSW01_01480 0.15 +1.9
295,881 + CSW01_01480 0.15 +0.8
295,881 + CSW01_01480 0.15 +1.8
295,884 - CSW01_01480 0.15 +1.3
295,884 - CSW01_01480 0.15 -1.4
295,889 - CSW01_01480 0.15 +0.5
295,889 - CSW01_01480 0.15 +0.5
295,889 - CSW01_01480 0.15 -0.7
295,889 - CSW01_01480 0.15 +0.4
295,889 - CSW01_01480 0.15 -2.8
295,889 - CSW01_01480 0.15 -4.4
295,889 - CSW01_01480 0.15 +0.6
295,889 - CSW01_01480 0.15 +1.3
295,909 - CSW01_01480 0.16 -1.6
295,915 + CSW01_01480 0.16 -1.6
295,964 - CSW01_01480 0.19 -1.6
295,973 + CSW01_01480 0.20 +0.9
296,018 + CSW01_01480 0.22 +0.7
296,043 + CSW01_01480 0.24 -1.3
296,051 - CSW01_01480 0.24 +0.9
296,051 - CSW01_01480 0.24 -3.5
296,127 + CSW01_01480 0.28 +0.8
296,127 - CSW01_01480 0.28 -0.4
296,227 + CSW01_01480 0.34 -1.0
296,227 - CSW01_01480 0.34 +1.7
296,235 - CSW01_01480 0.34 +1.9
296,242 + CSW01_01480 0.35 +1.5
296,242 + CSW01_01480 0.35 +1.0
296,250 - CSW01_01480 0.35 -2.9
296,250 - CSW01_01480 0.35 -1.4
296,250 - CSW01_01480 0.35 +1.4
296,254 + CSW01_01480 0.35 +2.0
296,254 + CSW01_01480 0.35 +0.3
296,260 + CSW01_01480 0.36 +1.3
296,260 + CSW01_01480 0.36 -2.8
296,262 - CSW01_01480 0.36 +1.1
296,280 + CSW01_01480 0.37 +0.9
296,333 + CSW01_01480 0.40 +1.1
296,333 + CSW01_01480 0.40 -0.5
296,333 + CSW01_01480 0.40 -2.2
296,336 - CSW01_01480 0.40 -0.1
296,433 + CSW01_01480 0.45 +0.3
296,434 - CSW01_01480 0.45 -1.2
296,438 + CSW01_01480 0.46 +0.5
296,441 - CSW01_01480 0.46 +1.8
296,443 + CSW01_01480 0.46 +1.3
296,446 - CSW01_01480 0.46 +1.2
296,451 - CSW01_01480 0.46 +0.0
296,463 - CSW01_01480 0.47 -1.8
296,463 - CSW01_01480 0.47 -3.6
296,506 + CSW01_01480 0.49 -0.1
296,509 - CSW01_01480 0.50 -1.9
296,520 + CSW01_01480 0.50 -3.6
296,524 + CSW01_01480 0.50 +1.8
296,534 + CSW01_01480 0.51 +1.2
296,534 + CSW01_01480 0.51 -0.1
296,534 + CSW01_01480 0.51 -3.8
296,542 - CSW01_01480 0.51 -1.9
296,542 - CSW01_01480 0.51 -0.4
296,589 + CSW01_01480 0.54 -4.6
296,589 + CSW01_01480 0.54 -3.2
296,597 - CSW01_01480 0.54 -2.1
296,626 + CSW01_01480 0.56 +1.1
296,633 - CSW01_01480 0.56 +0.8
296,640 + CSW01_01480 0.57 +0.7
296,643 - CSW01_01480 0.57 -2.2
296,648 + CSW01_01480 0.57 +0.3
296,667 - CSW01_01480 0.58 +1.6
296,669 - CSW01_01480 0.58 +2.5
296,684 + CSW01_01480 0.59 +1.2
296,706 + CSW01_01480 0.60 +0.7
296,729 - CSW01_01480 0.62 +0.6
296,749 + CSW01_01480 0.63 +0.8
296,757 - CSW01_01480 0.63 +0.3
296,757 - CSW01_01480 0.63 +1.7
296,757 - CSW01_01480 0.63 -2.2
296,796 + CSW01_01480 0.65 -3.1
296,796 + CSW01_01480 0.65 +0.9
296,796 + CSW01_01480 0.65 -3.9
296,804 - CSW01_01480 0.66 -2.5
296,806 + CSW01_01480 0.66 +0.1
296,985 - CSW01_01480 0.76 +0.1
296,991 + CSW01_01480 0.76 -0.2
296,999 - CSW01_01480 0.77 -0.2
297,013 + CSW01_01480 0.78 -0.5
297,032 - CSW01_01480 0.79 +0.1
297,032 - CSW01_01480 0.79 -0.4
297,043 + CSW01_01480 0.79 -3.3
297,066 + CSW01_01480 0.81 -0.5
297,066 + CSW01_01480 0.81 -4.5
297,076 + CSW01_01480 0.81 +1.0
297,084 - CSW01_01480 0.82 +0.9
297,092 + CSW01_01480 0.82 -0.5
297,118 + CSW01_01480 0.83 +0.4
297,141 - CSW01_01480 0.85 +1.4
297,141 - CSW01_01480 0.85 -0.2
297,141 - CSW01_01480 0.85 -0.3
297,221 + CSW01_01480 0.89 +0.8
297,253 + -3.0
297,280 - +1.4
297,280 - +1.2
297,280 - -0.1
297,280 - -3.5
297,340 - +0.8
297,363 - -2.7
297,410 - -0.9
297,418 - -3.5
297,433 + -0.2
297,466 + +0.0
297,473 + +0.9
297,474 - +0.5
297,478 + -1.9
297,481 + +0.7
297,483 + -0.7
297,483 + +0.6
297,484 + -0.9
297,488 + +0.5
297,489 + -2.7
297,491 + -2.5
297,491 - +2.5
297,497 - -0.2
297,509 - -4.5
297,556 + -1.9
297,681 + CSW01_01485 0.19 -1.6
297,689 - CSW01_01485 0.20 -1.4
297,764 - CSW01_01485 0.27 -2.6
297,764 - CSW01_01485 0.27 -0.2
297,765 + CSW01_01485 0.27 -2.7
297,811 - CSW01_01485 0.32 -3.3
297,828 - CSW01_01485 0.34 -2.8
297,860 + CSW01_01485 0.37 -1.8
297,860 + CSW01_01485 0.37 -2.5
297,910 - CSW01_01485 0.42 -1.8
297,920 + CSW01_01485 0.43 -3.6
298,037 + CSW01_01485 0.55 -3.2
298,061 + CSW01_01485 0.57 -1.4
298,061 + CSW01_01485 0.57 -3.3
298,061 + CSW01_01485 0.57 -2.3
298,061 + CSW01_01485 0.57 -2.0
298,069 - CSW01_01485 0.58 -3.2
298,069 - CSW01_01485 0.58 -2.3
298,069 - CSW01_01485 0.58 -3.3
298,115 + CSW01_01485 0.62 -2.0
298,115 + CSW01_01485 0.62 -2.9
298,123 - CSW01_01485 0.63 -1.6
298,123 - CSW01_01485 0.63 -0.6
298,123 - CSW01_01485 0.63 -2.5
298,130 + CSW01_01485 0.64 -1.9
298,224 - CSW01_01485 0.73 +0.1
298,229 + CSW01_01485 0.74 -2.8
298,237 - CSW01_01485 0.75 -2.3
298,237 - CSW01_01485 0.75 -2.4
298,353 - CSW01_01485 0.86 -1.6
298,377 - CSW01_01485 0.89 -3.6
298,405 - -2.4

Or see this region's nucleotide sequence