Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01230

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01220 and CSW01_01225 overlap by 10 nucleotidesCSW01_01225 and CSW01_01230 overlap by 4 nucleotidesCSW01_01230 and CSW01_01235 overlap by 40 nucleotidesCSW01_01235 and CSW01_01240 overlap by 4 nucleotides CSW01_01220: CSW01_01220 - capsular biosynthesis protein, at 235,339 to 236,922 _01220 CSW01_01225: CSW01_01225 - capsular biosynthesis protein, at 236,913 to 237,293 _01225 CSW01_01230: CSW01_01230 - 3-deoxy-D-manno-octulosonic acid transferase, at 237,290 to 238,609 _01230 CSW01_01235: CSW01_01235 - glycosyl transferase, at 238,570 to 239,358 _01235 CSW01_01240: CSW01_01240 - lipopolysaccharide biosynthesis protein, at 239,355 to 240,404 _01240 Position (kb) 237 238 239Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 236.308 kb on - strand, within CSW01_01220at 236.343 kb on + strand, within CSW01_01220at 236.343 kb on + strand, within CSW01_01220at 236.401 kb on - strand, within CSW01_01220at 236.403 kb on + strand, within CSW01_01220at 236.403 kb on + strand, within CSW01_01220at 236.403 kb on + strand, within CSW01_01220at 236.403 kb on + strand, within CSW01_01220at 236.411 kb on - strand, within CSW01_01220at 236.411 kb on - strand, within CSW01_01220at 236.419 kb on - strand, within CSW01_01220at 236.503 kb on - strand, within CSW01_01220at 236.529 kb on - strand, within CSW01_01220at 236.536 kb on + strand, within CSW01_01220at 236.545 kb on + strand, within CSW01_01220at 236.545 kb on + strand, within CSW01_01220at 236.553 kb on - strand, within CSW01_01220at 236.553 kb on - strand, within CSW01_01220at 236.553 kb on - strand, within CSW01_01220at 236.555 kb on - strand, within CSW01_01220at 236.601 kb on + strand, within CSW01_01220at 236.609 kb on + strand, within CSW01_01220at 236.609 kb on - strand, within CSW01_01220at 236.620 kb on + strand, within CSW01_01220at 236.633 kb on - strand, within CSW01_01220at 236.633 kb on - strand, within CSW01_01220at 236.633 kb on - strand, within CSW01_01220at 236.648 kb on + strand, within CSW01_01220at 236.648 kb on + strand, within CSW01_01220at 236.648 kb on + strand, within CSW01_01220at 236.654 kb on - strand, within CSW01_01220at 236.676 kb on + strand, within CSW01_01220at 236.684 kb on - strand, within CSW01_01220at 236.684 kb on - strand, within CSW01_01220at 236.732 kb on - strand, within CSW01_01220at 236.756 kb on + strand, within CSW01_01220at 236.768 kb on + strandat 236.768 kb on + strandat 236.776 kb on - strandat 236.792 kb on - strandat 236.792 kb on - strandat 236.878 kb on + strandat 236.903 kb on - strandat 236.949 kb on + strandat 237.004 kb on + strand, within CSW01_01225at 237.023 kb on - strand, within CSW01_01225at 237.025 kb on + strand, within CSW01_01225at 237.025 kb on + strand, within CSW01_01225at 237.039 kb on - strand, within CSW01_01225at 237.098 kb on + strand, within CSW01_01225at 237.128 kb on + strand, within CSW01_01225at 237.128 kb on + strand, within CSW01_01225at 237.136 kb on - strand, within CSW01_01225at 237.217 kb on - strand, within CSW01_01225at 237.227 kb on + strand, within CSW01_01225at 237.227 kb on + strand, within CSW01_01225at 237.244 kb on + strand, within CSW01_01225at 237.250 kb on + strand, within CSW01_01225at 238.592 kb on + strandat 238.652 kb on + strand, within CSW01_01235at 238.655 kb on - strand, within CSW01_01235at 238.670 kb on - strand, within CSW01_01235at 238.701 kb on - strand, within CSW01_01235at 238.717 kb on - strand, within CSW01_01235at 238.752 kb on - strand, within CSW01_01235at 238.754 kb on - strand, within CSW01_01235at 238.771 kb on - strand, within CSW01_01235at 238.794 kb on + strand, within CSW01_01235at 238.794 kb on + strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.807 kb on - strand, within CSW01_01235at 238.812 kb on - strand, within CSW01_01235at 238.825 kb on - strand, within CSW01_01235at 238.846 kb on - strand, within CSW01_01235at 238.892 kb on - strand, within CSW01_01235at 238.962 kb on - strand, within CSW01_01235at 238.989 kb on - strand, within CSW01_01235at 239.102 kb on - strand, within CSW01_01235at 239.138 kb on - strand, within CSW01_01235at 239.148 kb on - strand, within CSW01_01235at 239.284 kb on - strandat 239.378 kb on - strandat 239.429 kb on + strandat 239.466 kb on + strand, within CSW01_01240at 239.473 kb on + strand, within CSW01_01240at 239.474 kb on - strand, within CSW01_01240at 239.474 kb on - strand, within CSW01_01240

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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236,308 - CSW01_01220 0.61 +0.3
236,343 + CSW01_01220 0.63 +1.6
236,343 + CSW01_01220 0.63 -1.0
236,401 - CSW01_01220 0.67 +0.1
236,403 + CSW01_01220 0.67 -0.4
236,403 + CSW01_01220 0.67 -0.4
236,403 + CSW01_01220 0.67 +1.3
236,403 + CSW01_01220 0.67 +0.7
236,411 - CSW01_01220 0.68 -0.3
236,411 - CSW01_01220 0.68 +0.9
236,419 - CSW01_01220 0.68 -1.1
236,503 - CSW01_01220 0.73 +0.4
236,529 - CSW01_01220 0.75 +0.0
236,536 + CSW01_01220 0.76 +0.2
236,545 + CSW01_01220 0.76 +0.2
236,545 + CSW01_01220 0.76 +0.3
236,553 - CSW01_01220 0.77 -1.0
236,553 - CSW01_01220 0.77 +0.0
236,553 - CSW01_01220 0.77 -0.9
236,555 - CSW01_01220 0.77 +0.4
236,601 + CSW01_01220 0.80 -0.4
236,609 + CSW01_01220 0.80 +1.0
236,609 - CSW01_01220 0.80 -0.2
236,620 + CSW01_01220 0.81 +1.2
236,633 - CSW01_01220 0.82 -1.1
236,633 - CSW01_01220 0.82 -1.3
236,633 - CSW01_01220 0.82 +0.8
236,648 + CSW01_01220 0.83 +1.4
236,648 + CSW01_01220 0.83 -1.0
236,648 + CSW01_01220 0.83 +0.7
236,654 - CSW01_01220 0.83 -0.9
236,676 + CSW01_01220 0.84 -0.1
236,684 - CSW01_01220 0.85 -2.5
236,684 - CSW01_01220 0.85 -3.5
236,732 - CSW01_01220 0.88 +0.6
236,756 + CSW01_01220 0.89 -3.2
236,768 + -2.3
236,768 + +0.9
236,776 - -1.4
236,792 - +1.2
236,792 - +1.1
236,878 + -0.7
236,903 - +0.2
236,949 + -0.5
237,004 + CSW01_01225 0.24 -0.5
237,023 - CSW01_01225 0.29 +1.7
237,025 + CSW01_01225 0.29 +1.3
237,025 + CSW01_01225 0.29 -0.4
237,039 - CSW01_01225 0.33 -0.8
237,098 + CSW01_01225 0.49 -1.2
237,128 + CSW01_01225 0.56 -1.0
237,128 + CSW01_01225 0.56 -1.5
237,136 - CSW01_01225 0.59 +0.9
237,217 - CSW01_01225 0.80 +1.4
237,227 + CSW01_01225 0.82 +1.0
237,227 + CSW01_01225 0.82 +1.6
237,244 + CSW01_01225 0.87 -1.0
237,250 + CSW01_01225 0.88 -2.4
238,592 + -3.4
238,652 + CSW01_01235 0.10 -1.9
238,655 - CSW01_01235 0.11 -2.1
238,670 - CSW01_01235 0.13 -3.0
238,701 - CSW01_01235 0.17 +0.3
238,717 - CSW01_01235 0.19 -2.7
238,752 - CSW01_01235 0.23 +0.5
238,754 - CSW01_01235 0.23 -0.4
238,771 - CSW01_01235 0.25 -0.2
238,794 + CSW01_01235 0.28 -5.6
238,794 + CSW01_01235 0.28 -1.6
238,802 - CSW01_01235 0.29 +0.4
238,802 - CSW01_01235 0.29 +0.3
238,802 - CSW01_01235 0.29 -0.1
238,802 - CSW01_01235 0.29 -2.4
238,802 - CSW01_01235 0.29 +1.2
238,807 - CSW01_01235 0.30 +0.2
238,812 - CSW01_01235 0.31 +0.6
238,825 - CSW01_01235 0.32 -0.7
238,846 - CSW01_01235 0.35 -1.4
238,892 - CSW01_01235 0.41 +0.3
238,962 - CSW01_01235 0.50 +0.7
238,989 - CSW01_01235 0.53 -0.2
239,102 - CSW01_01235 0.67 +0.4
239,138 - CSW01_01235 0.72 +0.6
239,148 - CSW01_01235 0.73 +0.5
239,284 - -2.8
239,378 - -1.6
239,429 + -1.2
239,466 + CSW01_01240 0.11 -0.6
239,473 + CSW01_01240 0.11 -0.9
239,474 - CSW01_01240 0.11 +1.8
239,474 - CSW01_01240 0.11 -0.5

Or see this region's nucleotide sequence