Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01185 and CSW01_01190 are separated by 61 nucleotides CSW01_01190 and CSW01_01195 are separated by 42 nucleotides CSW01_01195 and CSW01_01200 are separated by 79 nucleotides CSW01_01200 and CSW01_01205 are separated by 3 nucleotides
CSW01_01185: CSW01_01185 - ADP-heptose--LPS heptosyltransferase, at 228,877 to 229,914
_01185
CSW01_01190: CSW01_01190 - glycosyltransferase family 2 protein, at 229,976 to 230,755
_01190
CSW01_01195: CSW01_01195 - ADP-heptose--LPS heptosyltransferase I, at 230,798 to 231,871
_01195
CSW01_01200: CSW01_01200 - 3-deoxy-D-manno-octulosonic acid kinase, at 231,951 to 232,706
_01200
CSW01_01205: CSW01_01205 - wavE lipopolysaccharide synthesis family protein, at 232,710 to 233,669
_01205
Position (kb) 230
231
232 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 229.832 kb on - strand at 229.858 kb on + strand at 229.886 kb on + strand at 229.893 kb on + strand at 229.908 kb on + strand at 229.908 kb on + strand at 229.967 kb on + strand at 229.983 kb on + strand at 230.007 kb on + strand at 230.009 kb on + strand at 230.033 kb on + strand at 230.033 kb on + strand at 230.033 kb on + strand at 230.038 kb on + strand at 230.041 kb on - strand at 230.043 kb on + strand at 230.051 kb on - strand at 230.051 kb on - strand at 230.051 kb on - strand at 230.051 kb on - strand at 230.051 kb on - strand at 230.051 kb on - strand at 230.131 kb on + strand, within CSW01_01190 at 230.146 kb on - strand, within CSW01_01190 at 230.156 kb on - strand, within CSW01_01190 at 230.222 kb on + strand, within CSW01_01190 at 230.234 kb on + strand, within CSW01_01190 at 230.269 kb on - strand, within CSW01_01190 at 230.330 kb on + strand, within CSW01_01190 at 230.414 kb on - strand, within CSW01_01190 at 230.426 kb on + strand, within CSW01_01190 at 230.568 kb on - strand, within CSW01_01190 at 230.601 kb on + strand, within CSW01_01190 at 230.601 kb on + strand, within CSW01_01190 at 230.609 kb on - strand, within CSW01_01190 at 230.657 kb on + strand, within CSW01_01190 at 230.670 kb on - strand, within CSW01_01190 at 230.680 kb on - strand at 230.680 kb on - strand at 230.825 kb on - strand at 230.829 kb on + strand at 230.868 kb on + strand at 230.868 kb on + strand at 230.876 kb on - strand at 230.997 kb on + strand, within CSW01_01195 at 230.997 kb on + strand, within CSW01_01195 at 231.005 kb on - strand, within CSW01_01195 at 231.009 kb on + strand, within CSW01_01195 at 231.009 kb on + strand, within CSW01_01195 at 231.009 kb on + strand, within CSW01_01195 at 231.017 kb on - strand, within CSW01_01195 at 231.017 kb on - strand, within CSW01_01195 at 231.017 kb on - strand, within CSW01_01195 at 231.149 kb on + strand, within CSW01_01195 at 231.149 kb on + strand, within CSW01_01195 at 231.265 kb on + strand, within CSW01_01195 at 231.275 kb on + strand, within CSW01_01195 at 231.283 kb on - strand, within CSW01_01195 at 231.283 kb on - strand, within CSW01_01195 at 231.285 kb on + strand, within CSW01_01195 at 231.293 kb on - strand, within CSW01_01195 at 231.301 kb on - strand, within CSW01_01195 at 231.327 kb on + strand, within CSW01_01195 at 231.383 kb on + strand, within CSW01_01195 at 231.428 kb on - strand, within CSW01_01195 at 231.710 kb on - strand, within CSW01_01195 at 231.836 kb on - strand at 231.847 kb on - strand at 231.847 kb on - strand at 231.847 kb on - strand at 231.847 kb on - strand at 231.847 kb on - strand at 231.847 kb on - strand at 231.849 kb on + strand at 231.857 kb on - strand at 231.857 kb on - strand at 231.857 kb on - strand at 231.857 kb on - strand at 231.857 kb on - strand at 231.866 kb on + strand at 231.874 kb on - strand at 231.874 kb on - strand at 231.874 kb on - strand at 231.892 kb on + strand at 231.906 kb on + strand at 231.911 kb on + strand at 231.919 kb on - strand at 231.964 kb on + strand at 232.648 kb on + strand at 232.660 kb on + strand at 232.660 kb on + strand at 232.724 kb on + strand at 232.738 kb on + strand at 232.746 kb on + strand at 232.746 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.747 kb on + strand at 232.749 kb on + strand at 232.755 kb on + strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.755 kb on - strand at 232.757 kb on + strand at 232.765 kb on - strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on + strand at 232.766 kb on - strand at 232.771 kb on + strand at 232.771 kb on + strand at 232.774 kb on + strand at 232.774 kb on - strand at 232.774 kb on - strand at 232.774 kb on - strand at 232.774 kb on - strand at 232.774 kb on - strand at 232.779 kb on - strand at 232.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 229,832 - +4.4 229,858 + +4.0 229,886 + -0.9 229,893 + +1.0 229,908 + +1.0 229,908 + -0.5 229,967 + +1.5 229,983 + +2.2 230,007 + +2.7 230,009 + +0.2 230,033 + +3.7 230,033 + +4.2 230,033 + +5.1 230,038 + +4.6 230,041 - +4.2 230,043 + +4.3 230,051 - +4.0 230,051 - +4.5 230,051 - +4.2 230,051 - +4.4 230,051 - +4.3 230,051 - +4.4 230,131 + CSW01_01190 0.20 +2.9 230,146 - CSW01_01190 0.22 +4.1 230,156 - CSW01_01190 0.23 +4.7 230,222 + CSW01_01190 0.32 +4.2 230,234 + CSW01_01190 0.33 +4.2 230,269 - CSW01_01190 0.38 +4.9 230,330 + CSW01_01190 0.45 +4.2 230,414 - CSW01_01190 0.56 +4.4 230,426 + CSW01_01190 0.58 +4.1 230,568 - CSW01_01190 0.76 +4.5 230,601 + CSW01_01190 0.80 +4.0 230,601 + CSW01_01190 0.80 +4.5 230,609 - CSW01_01190 0.81 +4.6 230,657 + CSW01_01190 0.87 +4.3 230,670 - CSW01_01190 0.89 +4.4 230,680 - +4.1 230,680 - +4.3 230,825 - -4.2 230,829 + -0.4 230,868 + +2.7 230,868 + +4.3 230,876 - +3.1 230,997 + CSW01_01195 0.19 -2.5 230,997 + CSW01_01195 0.19 +4.9 231,005 - CSW01_01195 0.19 +2.7 231,009 + CSW01_01195 0.20 -3.0 231,009 + CSW01_01195 0.20 +3.6 231,009 + CSW01_01195 0.20 +3.3 231,017 - CSW01_01195 0.20 -1.7 231,017 - CSW01_01195 0.20 +4.8 231,017 - CSW01_01195 0.20 +2.8 231,149 + CSW01_01195 0.33 +5.1 231,149 + CSW01_01195 0.33 +1.4 231,265 + CSW01_01195 0.43 +0.6 231,275 + CSW01_01195 0.44 +2.6 231,283 - CSW01_01195 0.45 +2.3 231,283 - CSW01_01195 0.45 +1.8 231,285 + CSW01_01195 0.45 -2.4 231,293 - CSW01_01195 0.46 -2.2 231,301 - CSW01_01195 0.47 -0.9 231,327 + CSW01_01195 0.49 +2.5 231,383 + CSW01_01195 0.54 +1.8 231,428 - CSW01_01195 0.59 +2.1 231,710 - CSW01_01195 0.85 +3.2 231,836 - +1.8 231,847 - +3.0 231,847 - +1.6 231,847 - +2.9 231,847 - +1.3 231,847 - -1.4 231,847 - +3.2 231,849 + +3.8 231,857 - +0.8 231,857 - -0.0 231,857 - -0.6 231,857 - +1.2 231,857 - -1.9 231,866 + +3.1 231,874 - -1.0 231,874 - -1.2 231,874 - -1.5 231,892 + +1.6 231,906 + -2.4 231,911 + +2.6 231,919 - -0.0 231,964 + +0.5 232,648 + -2.6 232,660 + +0.9 232,660 + -0.9 232,724 + +0.8 232,738 + +1.3 232,746 + -3.8 232,746 + +0.3 232,747 + -1.2 232,747 + +1.7 232,747 + -2.4 232,747 + +1.5 232,747 + -0.3 232,747 + +0.1 232,747 + +1.3 232,747 + +0.3 232,747 + -0.5 232,747 + -2.1 232,747 + -0.7 232,747 + +0.7 232,747 + +0.9 232,747 + -0.5 232,747 + +0.3 232,747 + -2.0 232,747 + -0.3 232,747 + +1.1 232,747 + -0.5 232,747 + -3.3 232,747 + -0.8 232,747 + -3.2 232,747 + -3.8 232,747 + -0.7 232,747 + -0.6 232,747 + -0.0 232,747 + +0.4 232,747 + +3.1 232,747 + -1.6 232,747 + -1.0 232,747 + +1.0 232,747 + +0.3 232,747 + +0.6 232,747 + +1.1 232,747 + -2.1 232,747 + +0.9 232,747 + -0.8 232,747 + +0.5 232,749 + -3.1 232,755 + +2.5 232,755 - +0.5 232,755 - -1.5 232,755 - -0.4 232,755 - -1.7 232,755 - -0.1 232,755 - -0.1 232,755 - -3.1 232,755 - +0.5 232,755 - +0.5 232,755 - +1.4 232,755 - -1.8 232,755 - -3.2 232,755 - +0.3 232,755 - -1.4 232,755 - -0.6 232,755 - +1.1 232,755 - +0.2 232,755 - +0.5 232,755 - +0.9 232,755 - -3.6 232,755 - -1.4 232,757 + -0.8 232,765 - -5.1 232,766 + +1.6 232,766 + -3.6 232,766 + +0.9 232,766 + +0.9 232,766 + -3.0 232,766 + +1.4 232,766 + -2.7 232,766 + +1.5 232,766 + -0.2 232,766 - +0.8 232,771 + +1.0 232,771 + +0.2 232,774 + -1.1 232,774 - +0.2 232,774 - -4.2 232,774 - +0.7 232,774 - +0.6 232,774 - -1.7 232,779 - -1.3 232,779 - +0.2
Or see this region's nucleotide sequence