Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01040

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01035 and CSW01_01040 are separated by 161 nucleotidesCSW01_01040 and CSW01_01045 are separated by 160 nucleotides CSW01_01035: CSW01_01035 - gamma-glutamyltransferase, at 198,834 to 200,600 _01035 CSW01_01040: CSW01_01040 - protein RarD, at 200,762 to 201,670 _01040 CSW01_01045: CSW01_01045 - DNA helicase RecQ, at 201,831 to 203,666 _01045 Position (kb) 200 201 202Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 199.766 kb on - strand, within CSW01_01035at 199.793 kb on + strand, within CSW01_01035at 199.793 kb on + strand, within CSW01_01035at 199.793 kb on + strand, within CSW01_01035at 199.793 kb on + strand, within CSW01_01035at 199.798 kb on + strand, within CSW01_01035at 199.801 kb on - strand, within CSW01_01035at 199.801 kb on - strand, within CSW01_01035at 199.801 kb on - strand, within CSW01_01035at 199.801 kb on - strand, within CSW01_01035at 199.859 kb on + strand, within CSW01_01035at 199.892 kb on - strand, within CSW01_01035at 199.893 kb on - strand, within CSW01_01035at 199.893 kb on - strand, within CSW01_01035at 199.893 kb on - strand, within CSW01_01035at 199.997 kb on + strand, within CSW01_01035at 200.003 kb on - strand, within CSW01_01035at 200.023 kb on - strand, within CSW01_01035at 200.036 kb on + strand, within CSW01_01035at 200.036 kb on + strand, within CSW01_01035at 200.043 kb on + strand, within CSW01_01035at 200.068 kb on + strand, within CSW01_01035at 200.076 kb on - strand, within CSW01_01035at 200.084 kb on + strand, within CSW01_01035at 200.113 kb on - strand, within CSW01_01035at 200.116 kb on + strand, within CSW01_01035at 200.119 kb on - strand, within CSW01_01035at 200.132 kb on - strand, within CSW01_01035at 200.192 kb on + strand, within CSW01_01035at 200.192 kb on + strand, within CSW01_01035at 200.192 kb on + strand, within CSW01_01035at 200.200 kb on - strand, within CSW01_01035at 200.200 kb on - strand, within CSW01_01035at 200.213 kb on + strand, within CSW01_01035at 200.232 kb on - strand, within CSW01_01035at 200.289 kb on - strand, within CSW01_01035at 200.327 kb on + strand, within CSW01_01035at 200.327 kb on + strand, within CSW01_01035at 200.327 kb on + strand, within CSW01_01035at 200.332 kb on + strand, within CSW01_01035at 200.348 kb on + strand, within CSW01_01035at 200.422 kb on + strand, within CSW01_01035at 200.424 kb on + strandat 200.494 kb on + strandat 200.497 kb on - strandat 200.517 kb on + strandat 200.519 kb on - strandat 200.547 kb on + strandat 200.555 kb on - strandat 200.561 kb on + strandat 200.608 kb on + strandat 200.616 kb on - strandat 200.631 kb on - strandat 200.631 kb on - strandat 200.633 kb on + strandat 200.695 kb on + strandat 200.703 kb on - strandat 200.713 kb on - strandat 200.715 kb on + strandat 200.750 kb on - strandat 200.759 kb on + strandat 200.767 kb on - strandat 200.774 kb on - strandat 200.790 kb on + strandat 200.790 kb on + strandat 200.790 kb on + strandat 200.790 kb on + strandat 200.793 kb on - strandat 200.800 kb on + strandat 200.816 kb on + strandat 200.824 kb on - strandat 200.836 kb on + strandat 200.879 kb on + strand, within CSW01_01040at 200.879 kb on + strand, within CSW01_01040at 200.887 kb on - strand, within CSW01_01040at 200.900 kb on + strand, within CSW01_01040at 200.908 kb on - strand, within CSW01_01040at 200.978 kb on - strand, within CSW01_01040at 200.980 kb on + strand, within CSW01_01040at 201.001 kb on - strand, within CSW01_01040at 201.011 kb on - strand, within CSW01_01040at 201.036 kb on - strand, within CSW01_01040at 201.036 kb on - strand, within CSW01_01040at 201.036 kb on - strand, within CSW01_01040at 201.036 kb on - strand, within CSW01_01040at 201.043 kb on + strand, within CSW01_01040at 201.043 kb on - strand, within CSW01_01040at 201.051 kb on - strand, within CSW01_01040at 201.069 kb on + strand, within CSW01_01040at 201.127 kb on - strand, within CSW01_01040at 201.127 kb on - strand, within CSW01_01040at 201.172 kb on + strand, within CSW01_01040at 201.203 kb on + strand, within CSW01_01040at 201.203 kb on + strand, within CSW01_01040at 201.203 kb on + strand, within CSW01_01040at 201.211 kb on - strand, within CSW01_01040at 201.218 kb on + strand, within CSW01_01040at 201.221 kb on - strand, within CSW01_01040at 201.223 kb on - strand, within CSW01_01040at 201.258 kb on - strand, within CSW01_01040at 201.318 kb on + strand, within CSW01_01040at 201.326 kb on - strand, within CSW01_01040at 201.331 kb on + strand, within CSW01_01040at 201.365 kb on + strand, within CSW01_01040at 201.375 kb on - strand, within CSW01_01040at 201.375 kb on - strand, within CSW01_01040at 201.409 kb on - strand, within CSW01_01040at 201.423 kb on + strand, within CSW01_01040at 201.451 kb on + strand, within CSW01_01040at 201.457 kb on + strand, within CSW01_01040at 201.457 kb on + strand, within CSW01_01040at 201.460 kb on - strand, within CSW01_01040at 201.589 kb on + strandat 201.606 kb on + strandat 201.620 kb on - strandat 201.671 kb on + strandat 201.685 kb on - strandat 201.686 kb on - strandat 201.723 kb on + strandat 201.736 kb on - strandat 201.738 kb on - strandat 201.738 kb on - strandat 201.746 kb on - strandat 201.762 kb on - strandat 201.762 kb on - strandat 201.774 kb on - strandat 201.782 kb on + strandat 201.787 kb on - strandat 201.808 kb on - strandat 201.831 kb on - strandat 201.831 kb on - strandat 201.833 kb on - strandat 201.854 kb on + strandat 201.864 kb on - strandat 201.866 kb on + strandat 201.874 kb on - strandat 201.897 kb on + strandat 201.905 kb on - strandat 201.907 kb on - strandat 201.933 kb on + strandat 201.946 kb on - strandat 201.947 kb on + strandat 202.006 kb on + strandat 202.015 kb on + strand, within CSW01_01045at 202.015 kb on + strand, within CSW01_01045at 202.015 kb on + strand, within CSW01_01045at 202.023 kb on - strand, within CSW01_01045at 202.023 kb on - strand, within CSW01_01045at 202.023 kb on - strand, within CSW01_01045at 202.044 kb on - strand, within CSW01_01045at 202.091 kb on + strand, within CSW01_01045at 202.091 kb on + strand, within CSW01_01045at 202.099 kb on - strand, within CSW01_01045at 202.099 kb on - strand, within CSW01_01045at 202.099 kb on - strand, within CSW01_01045at 202.133 kb on - strand, within CSW01_01045at 202.141 kb on + strand, within CSW01_01045at 202.184 kb on + strand, within CSW01_01045at 202.184 kb on + strand, within CSW01_01045at 202.191 kb on - strand, within CSW01_01045at 202.192 kb on - strand, within CSW01_01045at 202.193 kb on + strand, within CSW01_01045at 202.193 kb on + strand, within CSW01_01045at 202.193 kb on + strand, within CSW01_01045at 202.201 kb on - strand, within CSW01_01045at 202.201 kb on - strand, within CSW01_01045at 202.246 kb on + strand, within CSW01_01045at 202.246 kb on + strand, within CSW01_01045at 202.247 kb on - strand, within CSW01_01045at 202.249 kb on - strand, within CSW01_01045at 202.249 kb on - strand, within CSW01_01045at 202.296 kb on - strand, within CSW01_01045at 202.330 kb on + strand, within CSW01_01045at 202.347 kb on - strand, within CSW01_01045at 202.347 kb on - strand, within CSW01_01045at 202.347 kb on - strand, within CSW01_01045at 202.413 kb on + strand, within CSW01_01045at 202.419 kb on - strand, within CSW01_01045at 202.430 kb on + strand, within CSW01_01045at 202.459 kb on + strand, within CSW01_01045at 202.467 kb on - strand, within CSW01_01045at 202.467 kb on - strand, within CSW01_01045at 202.597 kb on + strand, within CSW01_01045at 202.597 kb on + strand, within CSW01_01045at 202.605 kb on - strand, within CSW01_01045at 202.612 kb on - strand, within CSW01_01045at 202.644 kb on + strand, within CSW01_01045at 202.663 kb on + strand, within CSW01_01045

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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199,766 - CSW01_01035 0.53 -0.1
199,793 + CSW01_01035 0.54 -1.0
199,793 + CSW01_01035 0.54 -3.8
199,793 + CSW01_01035 0.54 +3.0
199,793 + CSW01_01035 0.54 -0.0
199,798 + CSW01_01035 0.55 -4.0
199,801 - CSW01_01035 0.55 -1.2
199,801 - CSW01_01035 0.55 +0.2
199,801 - CSW01_01035 0.55 -1.0
199,801 - CSW01_01035 0.55 -2.4
199,859 + CSW01_01035 0.58 -0.5
199,892 - CSW01_01035 0.60 +0.1
199,893 - CSW01_01035 0.60 -0.1
199,893 - CSW01_01035 0.60 -1.4
199,893 - CSW01_01035 0.60 +2.4
199,997 + CSW01_01035 0.66 +0.8
200,003 - CSW01_01035 0.66 -2.2
200,023 - CSW01_01035 0.67 -0.1
200,036 + CSW01_01035 0.68 -3.9
200,036 + CSW01_01035 0.68 +0.4
200,043 + CSW01_01035 0.68 -3.0
200,068 + CSW01_01035 0.70 +0.8
200,076 - CSW01_01035 0.70 +1.3
200,084 + CSW01_01035 0.71 -4.3
200,113 - CSW01_01035 0.72 -2.9
200,116 + CSW01_01035 0.73 +0.8
200,119 - CSW01_01035 0.73 -4.4
200,132 - CSW01_01035 0.73 -0.7
200,192 + CSW01_01035 0.77 -3.1
200,192 + CSW01_01035 0.77 +0.2
200,192 + CSW01_01035 0.77 -0.3
200,200 - CSW01_01035 0.77 +0.6
200,200 - CSW01_01035 0.77 +1.3
200,213 + CSW01_01035 0.78 +0.9
200,232 - CSW01_01035 0.79 -0.2
200,289 - CSW01_01035 0.82 -2.9
200,327 + CSW01_01035 0.84 -4.2
200,327 + CSW01_01035 0.84 +0.6
200,327 + CSW01_01035 0.84 -4.0
200,332 + CSW01_01035 0.85 +0.6
200,348 + CSW01_01035 0.86 +0.8
200,422 + CSW01_01035 0.90 -2.1
200,424 + -3.1
200,494 + -2.9
200,497 - -1.6
200,517 + -3.3
200,519 - -4.0
200,547 + +0.5
200,555 - +1.5
200,561 + +0.7
200,608 + +0.7
200,616 - +1.1
200,631 - +0.2
200,631 - +0.9
200,633 + +0.8
200,695 + +0.6
200,703 - +1.4
200,713 - -3.4
200,715 + +0.2
200,750 - -0.3
200,759 + +0.0
200,767 - +0.8
200,774 - -0.2
200,790 + -3.1
200,790 + -2.1
200,790 + -2.1
200,790 + +0.6
200,793 - -1.9
200,800 + +0.3
200,816 + -4.7
200,824 - +0.7
200,836 + -1.8
200,879 + CSW01_01040 0.13 +0.8
200,879 + CSW01_01040 0.13 +0.2
200,887 - CSW01_01040 0.14 -0.1
200,900 + CSW01_01040 0.15 +0.6
200,908 - CSW01_01040 0.16 -0.0
200,978 - CSW01_01040 0.24 +3.2
200,980 + CSW01_01040 0.24 +0.7
201,001 - CSW01_01040 0.26 +0.5
201,011 - CSW01_01040 0.27 +2.2
201,036 - CSW01_01040 0.30 +0.2
201,036 - CSW01_01040 0.30 -2.1
201,036 - CSW01_01040 0.30 +0.9
201,036 - CSW01_01040 0.30 -0.0
201,043 + CSW01_01040 0.31 +0.1
201,043 - CSW01_01040 0.31 -2.8
201,051 - CSW01_01040 0.32 +0.6
201,069 + CSW01_01040 0.34 -3.3
201,127 - CSW01_01040 0.40 +1.7
201,127 - CSW01_01040 0.40 -1.9
201,172 + CSW01_01040 0.45 +1.9
201,203 + CSW01_01040 0.49 -0.6
201,203 + CSW01_01040 0.49 +0.5
201,203 + CSW01_01040 0.49 +0.2
201,211 - CSW01_01040 0.49 -1.9
201,218 + CSW01_01040 0.50 +1.2
201,221 - CSW01_01040 0.50 +0.1
201,223 - CSW01_01040 0.51 +2.0
201,258 - CSW01_01040 0.55 -2.3
201,318 + CSW01_01040 0.61 +0.2
201,326 - CSW01_01040 0.62 +0.2
201,331 + CSW01_01040 0.63 +0.3
201,365 + CSW01_01040 0.66 +0.6
201,375 - CSW01_01040 0.67 -2.1
201,375 - CSW01_01040 0.67 -2.6
201,409 - CSW01_01040 0.71 +0.8
201,423 + CSW01_01040 0.73 +0.4
201,451 + CSW01_01040 0.76 +0.2
201,457 + CSW01_01040 0.76 +1.4
201,457 + CSW01_01040 0.76 -5.7
201,460 - CSW01_01040 0.77 -3.3
201,589 + -0.2
201,606 + +0.4
201,620 - -4.0
201,671 + -0.6
201,685 - -1.3
201,686 - -0.9
201,723 + +0.6
201,736 - -3.5
201,738 - -2.6
201,738 - -2.9
201,746 - -2.9
201,762 - -3.0
201,762 - -3.1
201,774 - -2.1
201,782 + -3.5
201,787 - -2.0
201,808 - -3.1
201,831 - +1.3
201,831 - +0.4
201,833 - -1.9
201,854 + +3.2
201,864 - -2.2
201,866 + +0.5
201,874 - -3.4
201,897 + -3.6
201,905 - -4.2
201,907 - -0.8
201,933 + -0.6
201,946 - -3.7
201,947 + +0.6
202,006 + -3.5
202,015 + CSW01_01045 0.10 +1.5
202,015 + CSW01_01045 0.10 -1.6
202,015 + CSW01_01045 0.10 -0.3
202,023 - CSW01_01045 0.10 -2.6
202,023 - CSW01_01045 0.10 -3.6
202,023 - CSW01_01045 0.10 +2.2
202,044 - CSW01_01045 0.12 -1.4
202,091 + CSW01_01045 0.14 +2.7
202,091 + CSW01_01045 0.14 +0.1
202,099 - CSW01_01045 0.15 -1.8
202,099 - CSW01_01045 0.15 +0.5
202,099 - CSW01_01045 0.15 -0.6
202,133 - CSW01_01045 0.16 -4.1
202,141 + CSW01_01045 0.17 -0.7
202,184 + CSW01_01045 0.19 +0.2
202,184 + CSW01_01045 0.19 +1.7
202,191 - CSW01_01045 0.20 -1.5
202,192 - CSW01_01045 0.20 +0.1
202,193 + CSW01_01045 0.20 +0.6
202,193 + CSW01_01045 0.20 -0.1
202,193 + CSW01_01045 0.20 -4.4
202,201 - CSW01_01045 0.20 -2.2
202,201 - CSW01_01045 0.20 +0.5
202,246 + CSW01_01045 0.23 -0.1
202,246 + CSW01_01045 0.23 +0.2
202,247 - CSW01_01045 0.23 -3.5
202,249 - CSW01_01045 0.23 +0.1
202,249 - CSW01_01045 0.23 -0.8
202,296 - CSW01_01045 0.25 +0.9
202,330 + CSW01_01045 0.27 -3.4
202,347 - CSW01_01045 0.28 -0.1
202,347 - CSW01_01045 0.28 -0.7
202,347 - CSW01_01045 0.28 +1.0
202,413 + CSW01_01045 0.32 -0.4
202,419 - CSW01_01045 0.32 -1.5
202,430 + CSW01_01045 0.33 -0.8
202,459 + CSW01_01045 0.34 -0.4
202,467 - CSW01_01045 0.35 +0.3
202,467 - CSW01_01045 0.35 -0.8
202,597 + CSW01_01045 0.42 +1.3
202,597 + CSW01_01045 0.42 -2.2
202,605 - CSW01_01045 0.42 -3.3
202,612 - CSW01_01045 0.43 -3.1
202,644 + CSW01_01045 0.44 -2.4
202,663 + CSW01_01045 0.45 +0.9

Or see this region's nucleotide sequence