Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00635

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00620 and CSW01_00625 are separated by 105 nucleotidesCSW01_00625 and CSW01_00630 overlap by 24 nucleotidesCSW01_00630 and CSW01_00635 are separated by 32 nucleotidesCSW01_00635 and CSW01_00640 are separated by 11 nucleotidesCSW01_00640 and CSW01_00645 are separated by 13 nucleotides CSW01_00620: CSW01_00620 - class I adenylate cyclase, at 116,054 to 118,585 _00620 CSW01_00625: CSW01_00625 - iron donor protein CyaY, at 118,691 to 119,005 _00625 CSW01_00630: CSW01_00630 - lipopeptide, at 118,982 to 119,197 _00630 CSW01_00635: CSW01_00635 - diaminopimelate decarboxylase, at 119,230 to 120,483 _00635 CSW01_00640: CSW01_00640 - diaminopimelate epimerase, at 120,495 to 121,325 _00640 CSW01_00645: CSW01_00645 - DUF484 domain-containing protein, at 121,339 to 122,037 _00645 Position (kb) 119 120 121Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 118.283 kb on + strand, within CSW01_00620at 118.283 kb on + strand, within CSW01_00620at 118.380 kb on - strandat 118.500 kb on + strandat 118.508 kb on - strandat 118.526 kb on + strandat 118.545 kb on + strandat 118.548 kb on - strandat 118.558 kb on - strandat 118.629 kb on + strandat 118.697 kb on - strandat 118.708 kb on + strandat 118.734 kb on + strand, within CSW01_00625at 118.742 kb on - strand, within CSW01_00625at 118.742 kb on - strand, within CSW01_00625at 119.153 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.206 kb on + strandat 119.232 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.309 kb on + strandat 119.341 kb on + strandat 119.349 kb on + strandat 119.349 kb on - strandat 119.431 kb on + strand, within CSW01_00635at 119.455 kb on + strand, within CSW01_00635at 119.469 kb on - strand, within CSW01_00635at 119.510 kb on + strand, within CSW01_00635at 119.527 kb on + strand, within CSW01_00635at 119.534 kb on + strand, within CSW01_00635at 119.535 kb on - strand, within CSW01_00635at 119.639 kb on - strand, within CSW01_00635at 119.692 kb on - strand, within CSW01_00635at 119.692 kb on - strand, within CSW01_00635at 119.725 kb on + strand, within CSW01_00635at 119.761 kb on - strand, within CSW01_00635at 119.772 kb on + strand, within CSW01_00635at 119.772 kb on + strand, within CSW01_00635at 119.772 kb on + strand, within CSW01_00635at 119.772 kb on + strand, within CSW01_00635at 119.780 kb on - strand, within CSW01_00635at 119.780 kb on - strand, within CSW01_00635at 119.785 kb on + strand, within CSW01_00635at 119.785 kb on + strand, within CSW01_00635at 119.785 kb on + strand, within CSW01_00635at 119.792 kb on + strand, within CSW01_00635at 119.793 kb on - strand, within CSW01_00635at 119.793 kb on - strand, within CSW01_00635at 119.834 kb on + strand, within CSW01_00635at 119.839 kb on + strand, within CSW01_00635at 119.930 kb on + strand, within CSW01_00635at 119.955 kb on - strand, within CSW01_00635at 119.956 kb on - strand, within CSW01_00635at 119.966 kb on - strand, within CSW01_00635at 119.997 kb on + strand, within CSW01_00635at 120.004 kb on + strand, within CSW01_00635at 120.017 kb on + strand, within CSW01_00635at 120.017 kb on + strand, within CSW01_00635at 120.183 kb on - strand, within CSW01_00635at 120.202 kb on + strand, within CSW01_00635at 120.231 kb on - strand, within CSW01_00635at 120.301 kb on - strand, within CSW01_00635at 120.319 kb on - strand, within CSW01_00635at 120.332 kb on + strand, within CSW01_00635at 120.332 kb on + strand, within CSW01_00635at 120.332 kb on + strand, within CSW01_00635at 120.332 kb on + strand, within CSW01_00635at 120.338 kb on - strand, within CSW01_00635at 120.340 kb on + strand, within CSW01_00635at 120.340 kb on - strand, within CSW01_00635at 120.340 kb on - strand, within CSW01_00635at 120.340 kb on - strand, within CSW01_00635at 120.340 kb on - strand, within CSW01_00635at 120.394 kb on + strandat 120.395 kb on - strandat 120.431 kb on + strandat 120.434 kb on + strandat 120.441 kb on + strandat 121.316 kb on - strandat 121.377 kb on - strandat 121.377 kb on - strandat 121.429 kb on - strand, within CSW01_00645at 121.429 kb on - strand, within CSW01_00645at 121.438 kb on + strand, within CSW01_00645at 121.438 kb on + strand, within CSW01_00645at 121.446 kb on - strand, within CSW01_00645at 121.461 kb on - strand, within CSW01_00645at 121.478 kb on + strand, within CSW01_00645at 121.478 kb on + strand, within CSW01_00645at 121.480 kb on + strand, within CSW01_00645at 121.480 kb on + strand, within CSW01_00645at 121.480 kb on + strand, within CSW01_00645

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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118,283 + CSW01_00620 0.88 +2.1
118,283 + CSW01_00620 0.88 -2.5
118,380 - +3.3
118,500 + -2.2
118,508 - -2.3
118,526 + +1.9
118,545 + -0.2
118,548 - +1.0
118,558 - +2.2
118,629 + +0.9
118,697 - -0.9
118,708 + -2.6
118,734 + CSW01_00625 0.14 -2.4
118,742 - CSW01_00625 0.16 +1.2
118,742 - CSW01_00625 0.16 -0.9
119,153 + CSW01_00630 0.79 -4.3
119,155 + CSW01_00630 0.80 +2.0
119,155 + CSW01_00630 0.80 +1.2
119,155 + CSW01_00630 0.80 -1.3
119,155 + CSW01_00630 0.80 -3.5
119,155 + CSW01_00630 0.80 +1.0
119,155 + CSW01_00630 0.80 -3.2
119,155 + CSW01_00630 0.80 +0.9
119,155 + CSW01_00630 0.80 -0.3
119,163 - CSW01_00630 0.84 +1.8
119,163 - CSW01_00630 0.84 +0.6
119,163 - CSW01_00630 0.84 +0.6
119,163 - CSW01_00630 0.84 +1.8
119,163 - CSW01_00630 0.84 -0.9
119,163 - CSW01_00630 0.84 +0.3
119,163 - CSW01_00630 0.84 -2.6
119,206 + -0.1
119,232 + -2.6
119,262 + -2.6
119,262 + +0.4
119,262 + -2.7
119,262 + +1.4
119,262 + +0.5
119,262 + -4.0
119,262 + -0.0
119,262 + -3.5
119,262 + -0.1
119,262 + +0.5
119,262 + -0.0
119,262 + +0.8
119,262 + -0.3
119,262 + +3.2
119,262 + -3.9
119,270 - +1.4
119,270 - -0.4
119,270 - -3.6
119,270 - -0.4
119,270 - +1.5
119,270 - -1.2
119,270 - +1.0
119,270 - +0.6
119,270 - +0.8
119,270 - -3.9
119,270 - -0.2
119,270 - -0.7
119,270 - +0.9
119,309 + -2.6
119,341 + -2.3
119,349 + +0.1
119,349 - -3.2
119,431 + CSW01_00635 0.16 +0.1
119,455 + CSW01_00635 0.18 +0.0
119,469 - CSW01_00635 0.19 -3.3
119,510 + CSW01_00635 0.22 +1.5
119,527 + CSW01_00635 0.24 +0.9
119,534 + CSW01_00635 0.24 -0.2
119,535 - CSW01_00635 0.24 +1.6
119,639 - CSW01_00635 0.33 +1.7
119,692 - CSW01_00635 0.37 +0.7
119,692 - CSW01_00635 0.37 +1.1
119,725 + CSW01_00635 0.39 -3.4
119,761 - CSW01_00635 0.42 +0.7
119,772 + CSW01_00635 0.43 +2.4
119,772 + CSW01_00635 0.43 +0.2
119,772 + CSW01_00635 0.43 +0.0
119,772 + CSW01_00635 0.43 -1.6
119,780 - CSW01_00635 0.44 +0.2
119,780 - CSW01_00635 0.44 -1.4
119,785 + CSW01_00635 0.44 -2.4
119,785 + CSW01_00635 0.44 +0.9
119,785 + CSW01_00635 0.44 +0.3
119,792 + CSW01_00635 0.45 +0.9
119,793 - CSW01_00635 0.45 -0.0
119,793 - CSW01_00635 0.45 -0.6
119,834 + CSW01_00635 0.48 -3.1
119,839 + CSW01_00635 0.49 -4.6
119,930 + CSW01_00635 0.56 -2.9
119,955 - CSW01_00635 0.58 -0.2
119,956 - CSW01_00635 0.58 -1.9
119,966 - CSW01_00635 0.59 -1.9
119,997 + CSW01_00635 0.61 -4.5
120,004 + CSW01_00635 0.62 -0.9
120,017 + CSW01_00635 0.63 +0.0
120,017 + CSW01_00635 0.63 -3.4
120,183 - CSW01_00635 0.76 +1.2
120,202 + CSW01_00635 0.78 -0.0
120,231 - CSW01_00635 0.80 -0.7
120,301 - CSW01_00635 0.85 +0.5
120,319 - CSW01_00635 0.87 -0.6
120,332 + CSW01_00635 0.88 +1.8
120,332 + CSW01_00635 0.88 -3.4
120,332 + CSW01_00635 0.88 +0.0
120,332 + CSW01_00635 0.88 -0.9
120,338 - CSW01_00635 0.88 +1.0
120,340 + CSW01_00635 0.89 -0.2
120,340 - CSW01_00635 0.89 +0.6
120,340 - CSW01_00635 0.89 -2.4
120,340 - CSW01_00635 0.89 -2.5
120,340 - CSW01_00635 0.89 -3.1
120,394 + -0.2
120,395 - -3.5
120,431 + +0.4
120,434 + -3.7
120,441 + -1.6
121,316 - +0.7
121,377 - -1.5
121,377 - -0.9
121,429 - CSW01_00645 0.13 -4.1
121,429 - CSW01_00645 0.13 -0.3
121,438 + CSW01_00645 0.14 +1.4
121,438 + CSW01_00645 0.14 -3.4
121,446 - CSW01_00645 0.15 +0.9
121,461 - CSW01_00645 0.17 -0.9
121,478 + CSW01_00645 0.20 +1.2
121,478 + CSW01_00645 0.20 +0.4
121,480 + CSW01_00645 0.20 -2.2
121,480 + CSW01_00645 0.20 -5.0
121,480 + CSW01_00645 0.20 +0.7

Or see this region's nucleotide sequence