Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00540

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00530 and CSW01_00535 are separated by 6 nucleotidesCSW01_00535 and CSW01_00540 are separated by 80 nucleotidesCSW01_00540 and CSW01_00545 are separated by 464 nucleotides CSW01_00530: CSW01_00530 - rhomboid family intramembrane serine protease GlpG, at 97,947 to 98,780 _00530 CSW01_00535: CSW01_00535 - thiosulfate sulfurtransferase, at 98,787 to 99,107 _00535 CSW01_00540: CSW01_00540 - hypothetical protein, at 99,188 to 99,403 _00540 CSW01_00545: CSW01_00545 - TatD family deoxyribonuclease, at 99,868 to 100,635 _00545 Position (kb) 99 100Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 98.192 kb on + strand, within CSW01_00530at 98.202 kb on + strand, within CSW01_00530at 98.202 kb on + strand, within CSW01_00530at 98.202 kb on + strand, within CSW01_00530at 98.202 kb on + strand, within CSW01_00530at 98.210 kb on - strand, within CSW01_00530at 98.210 kb on - strand, within CSW01_00530at 98.210 kb on - strand, within CSW01_00530at 98.210 kb on - strand, within CSW01_00530at 98.210 kb on - strand, within CSW01_00530at 98.210 kb on - strand, within CSW01_00530at 98.212 kb on + strand, within CSW01_00530at 98.220 kb on - strand, within CSW01_00530at 98.252 kb on + strand, within CSW01_00530at 98.252 kb on + strand, within CSW01_00530at 98.252 kb on + strand, within CSW01_00530at 98.260 kb on - strand, within CSW01_00530at 98.260 kb on - strand, within CSW01_00530at 98.269 kb on - strand, within CSW01_00530at 98.273 kb on + strand, within CSW01_00530at 98.273 kb on + strand, within CSW01_00530at 98.273 kb on + strand, within CSW01_00530at 98.273 kb on + strand, within CSW01_00530at 98.273 kb on + strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.281 kb on - strand, within CSW01_00530at 98.302 kb on - strand, within CSW01_00530at 98.318 kb on - strand, within CSW01_00530at 98.351 kb on + strand, within CSW01_00530at 98.359 kb on - strand, within CSW01_00530at 98.359 kb on - strand, within CSW01_00530at 98.359 kb on - strand, within CSW01_00530at 98.407 kb on + strand, within CSW01_00530at 98.407 kb on - strand, within CSW01_00530at 98.415 kb on - strand, within CSW01_00530at 98.437 kb on - strand, within CSW01_00530at 98.437 kb on - strand, within CSW01_00530at 98.444 kb on + strand, within CSW01_00530at 98.444 kb on - strand, within CSW01_00530at 98.452 kb on - strand, within CSW01_00530at 98.470 kb on + strand, within CSW01_00530at 98.478 kb on - strand, within CSW01_00530at 98.495 kb on - strand, within CSW01_00530at 98.519 kb on + strand, within CSW01_00530at 98.558 kb on - strand, within CSW01_00530at 98.593 kb on + strand, within CSW01_00530at 98.601 kb on - strand, within CSW01_00530at 98.648 kb on - strand, within CSW01_00530at 98.651 kb on - strand, within CSW01_00530at 98.651 kb on - strand, within CSW01_00530at 98.668 kb on - strand, within CSW01_00530at 98.678 kb on - strand, within CSW01_00530at 98.736 kb on + strandat 98.737 kb on + strandat 98.817 kb on + strandat 98.825 kb on + strand, within CSW01_00535at 98.825 kb on - strand, within CSW01_00535at 98.842 kb on + strand, within CSW01_00535at 98.842 kb on + strand, within CSW01_00535at 98.845 kb on + strand, within CSW01_00535at 98.845 kb on + strand, within CSW01_00535at 98.853 kb on - strand, within CSW01_00535at 98.853 kb on - strand, within CSW01_00535at 98.853 kb on - strand, within CSW01_00535at 98.853 kb on - strand, within CSW01_00535at 98.853 kb on - strand, within CSW01_00535at 98.877 kb on + strand, within CSW01_00535at 98.877 kb on + strand, within CSW01_00535at 98.885 kb on - strand, within CSW01_00535at 98.971 kb on - strand, within CSW01_00535at 98.971 kb on - strand, within CSW01_00535at 98.975 kb on - strand, within CSW01_00535at 99.117 kb on - strandat 99.153 kb on + strandat 99.169 kb on + strandat 99.180 kb on + strandat 99.180 kb on + strandat 99.180 kb on + strandat 99.180 kb on + strandat 99.180 kb on + strandat 99.221 kb on + strand, within CSW01_00540at 99.224 kb on - strand, within CSW01_00540at 99.345 kb on + strand, within CSW01_00540at 99.512 kb on + strandat 99.581 kb on - strandat 99.585 kb on + strandat 99.585 kb on + strandat 99.672 kb on + strandat 99.680 kb on - strandat 99.680 kb on - strandat 99.683 kb on + strandat 99.698 kb on + strandat 99.698 kb on + strandat 99.879 kb on + strandat 99.938 kb on + strandat 99.938 kb on + strandat 99.938 kb on + strandat 99.938 kb on + strandat 99.946 kb on - strand, within CSW01_00545at 99.981 kb on - strand, within CSW01_00545at 100.028 kb on - strand, within CSW01_00545at 100.072 kb on + strand, within CSW01_00545at 100.167 kb on + strand, within CSW01_00545at 100.185 kb on - strand, within CSW01_00545at 100.211 kb on + strand, within CSW01_00545at 100.211 kb on + strand, within CSW01_00545at 100.219 kb on - strand, within CSW01_00545at 100.219 kb on - strand, within CSW01_00545at 100.242 kb on + strand, within CSW01_00545at 100.250 kb on - strand, within CSW01_00545at 100.250 kb on - strand, within CSW01_00545at 100.278 kb on + strand, within CSW01_00545at 100.291 kb on + strand, within CSW01_00545at 100.352 kb on + strand, within CSW01_00545at 100.398 kb on + strand, within CSW01_00545

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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98,192 + CSW01_00530 0.29 +1.5
98,202 + CSW01_00530 0.31 +1.4
98,202 + CSW01_00530 0.31 -2.6
98,202 + CSW01_00530 0.31 -3.9
98,202 + CSW01_00530 0.31 -3.3
98,210 - CSW01_00530 0.32 +0.8
98,210 - CSW01_00530 0.32 -4.5
98,210 - CSW01_00530 0.32 +0.5
98,210 - CSW01_00530 0.32 -1.0
98,210 - CSW01_00530 0.32 +0.9
98,210 - CSW01_00530 0.32 -0.5
98,212 + CSW01_00530 0.32 -1.6
98,220 - CSW01_00530 0.33 +3.1
98,252 + CSW01_00530 0.37 +0.5
98,252 + CSW01_00530 0.37 +2.2
98,252 + CSW01_00530 0.37 -4.3
98,260 - CSW01_00530 0.38 +0.4
98,260 - CSW01_00530 0.38 -0.0
98,269 - CSW01_00530 0.39 -1.7
98,273 + CSW01_00530 0.39 -3.3
98,273 + CSW01_00530 0.39 +1.4
98,273 + CSW01_00530 0.39 +0.8
98,273 + CSW01_00530 0.39 -0.1
98,273 + CSW01_00530 0.39 +0.7
98,281 - CSW01_00530 0.40 -0.4
98,281 - CSW01_00530 0.40 -1.7
98,281 - CSW01_00530 0.40 +0.3
98,281 - CSW01_00530 0.40 -4.3
98,281 - CSW01_00530 0.40 +0.6
98,281 - CSW01_00530 0.40 -3.2
98,281 - CSW01_00530 0.40 +0.5
98,281 - CSW01_00530 0.40 -1.2
98,281 - CSW01_00530 0.40 +0.2
98,281 - CSW01_00530 0.40 -4.6
98,281 - CSW01_00530 0.40 -3.5
98,281 - CSW01_00530 0.40 +1.1
98,302 - CSW01_00530 0.43 -4.3
98,318 - CSW01_00530 0.44 -0.4
98,351 + CSW01_00530 0.48 +0.9
98,359 - CSW01_00530 0.49 -1.5
98,359 - CSW01_00530 0.49 +0.1
98,359 - CSW01_00530 0.49 +0.1
98,407 + CSW01_00530 0.55 +0.2
98,407 - CSW01_00530 0.55 -3.3
98,415 - CSW01_00530 0.56 -1.2
98,437 - CSW01_00530 0.59 +0.4
98,437 - CSW01_00530 0.59 -0.4
98,444 + CSW01_00530 0.60 -1.1
98,444 - CSW01_00530 0.60 +1.2
98,452 - CSW01_00530 0.61 +1.3
98,470 + CSW01_00530 0.63 +0.6
98,478 - CSW01_00530 0.64 -3.2
98,495 - CSW01_00530 0.66 +1.4
98,519 + CSW01_00530 0.69 +1.7
98,558 - CSW01_00530 0.73 +1.0
98,593 + CSW01_00530 0.77 +2.3
98,601 - CSW01_00530 0.78 +0.6
98,648 - CSW01_00530 0.84 +1.4
98,651 - CSW01_00530 0.84 +0.1
98,651 - CSW01_00530 0.84 -0.8
98,668 - CSW01_00530 0.86 -1.8
98,678 - CSW01_00530 0.88 -1.4
98,736 + -0.7
98,737 + -1.9
98,817 + -0.4
98,825 + CSW01_00535 0.12 +0.1
98,825 - CSW01_00535 0.12 +1.5
98,842 + CSW01_00535 0.17 +0.5
98,842 + CSW01_00535 0.17 -4.5
98,845 + CSW01_00535 0.18 -0.6
98,845 + CSW01_00535 0.18 -2.9
98,853 - CSW01_00535 0.21 -0.1
98,853 - CSW01_00535 0.21 +0.4
98,853 - CSW01_00535 0.21 +0.3
98,853 - CSW01_00535 0.21 +0.8
98,853 - CSW01_00535 0.21 -2.6
98,877 + CSW01_00535 0.28 +1.3
98,877 + CSW01_00535 0.28 +0.8
98,885 - CSW01_00535 0.31 -0.8
98,971 - CSW01_00535 0.57 -1.1
98,971 - CSW01_00535 0.57 +0.4
98,975 - CSW01_00535 0.59 +0.3
99,117 - -0.4
99,153 + -4.4
99,169 + +0.0
99,180 + +0.8
99,180 + +1.9
99,180 + +0.7
99,180 + +0.6
99,180 + -2.9
99,221 + CSW01_00540 0.15 -3.5
99,224 - CSW01_00540 0.17 -2.6
99,345 + CSW01_00540 0.73 -3.9
99,512 + -1.0
99,581 - -2.7
99,585 + +0.8
99,585 + -3.1
99,672 + -4.3
99,680 - +0.9
99,680 - +0.1
99,683 + -0.8
99,698 + +0.4
99,698 + +0.7
99,879 + -1.8
99,938 + +0.7
99,938 + +0.1
99,938 + -0.3
99,938 + +0.7
99,946 - CSW01_00545 0.10 -1.4
99,981 - CSW01_00545 0.15 -4.4
100,028 - CSW01_00545 0.21 +1.0
100,072 + CSW01_00545 0.27 +1.6
100,167 + CSW01_00545 0.39 +1.7
100,185 - CSW01_00545 0.41 +0.1
100,211 + CSW01_00545 0.45 +0.5
100,211 + CSW01_00545 0.45 -1.4
100,219 - CSW01_00545 0.46 +0.3
100,219 - CSW01_00545 0.46 +1.1
100,242 + CSW01_00545 0.49 -0.3
100,250 - CSW01_00545 0.50 -0.4
100,250 - CSW01_00545 0.50 -2.4
100,278 + CSW01_00545 0.53 +0.2
100,291 + CSW01_00545 0.55 +1.3
100,352 + CSW01_00545 0.63 -1.7
100,398 + CSW01_00545 0.69 -2.1

Or see this region's nucleotide sequence