Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00375

Experiment: ICP1_phage_23.5_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_23.5_MOI_rep1
68,301	+				+0.9
68,301	+				+0.5
68,304	-				-0.5
68,304	-				+0.3
68,306	+				-4.8
68,306	+				+0.5
68,309	-				-0.1
68,309	-				+0.4
68,314	-				-1.7
68,314	-				+0.1
68,347	-				+1.0
68,351	+		CSW01_00370	0.10	-1.4
68,359	-		CSW01_00370	0.11	-0.2
68,359	-		CSW01_00370	0.11	+1.1
68,409	+		CSW01_00370	0.16	-3.3
68,417	-		CSW01_00370	0.17	-0.9
68,417	-		CSW01_00370	0.17	+0.2
68,417	-		CSW01_00370	0.17	-3.7
68,417	-		CSW01_00370	0.17	+2.0
68,442	+		CSW01_00370	0.19	+0.6
68,468	+		CSW01_00370	0.22	-0.7
68,469	-		CSW01_00370	0.22	-0.6
68,470	+		CSW01_00370	0.22	-2.9
68,470	+		CSW01_00370	0.22	+0.5
68,478	-		CSW01_00370	0.23	-3.1
68,568	-		CSW01_00370	0.32	-2.5
68,588	-		CSW01_00370	0.34	-2.3
68,588	-		CSW01_00370	0.34	+0.6
68,588	-		CSW01_00370	0.34	-0.6
68,588	-		CSW01_00370	0.34	-4.3
68,616	+		CSW01_00370	0.37	-1.9
68,619	+		CSW01_00370	0.37	+0.5
68,632	+		CSW01_00370	0.39	+0.2
68,632	+		CSW01_00370	0.39	-0.2
68,634	+		CSW01_00370	0.39	-0.2
68,634	+		CSW01_00370	0.39	+0.7
68,634	+		CSW01_00370	0.39	-0.8
68,637	+		CSW01_00370	0.39	+1.2
68,640	-		CSW01_00370	0.40	+0.2
68,642	-		CSW01_00370	0.40	-0.5
68,642	-		CSW01_00370	0.40	+0.8
68,642	-		CSW01_00370	0.40	+0.1
68,644	+		CSW01_00370	0.40	+1.0
68,644	+		CSW01_00370	0.40	-1.4
68,644	+		CSW01_00370	0.40	-3.1
68,652	-		CSW01_00370	0.41	+0.1
68,652	-		CSW01_00370	0.41	+0.3
68,652	-		CSW01_00370	0.41	-1.6
68,652	-		CSW01_00370	0.41	-0.0
68,652	-		CSW01_00370	0.41	-2.3
68,698	+		CSW01_00370	0.45	-1.0
68,704	-		CSW01_00370	0.46	+1.7
68,725	+		CSW01_00370	0.48	+0.7
68,725	+		CSW01_00370	0.48	-5.2
68,760	+		CSW01_00370	0.52	+0.5
68,776	+		CSW01_00370	0.53	+0.2
68,776	+		CSW01_00370	0.53	-0.5
68,784	-		CSW01_00370	0.54	+1.3
68,786	+		CSW01_00370	0.54	+0.2
68,790	+		CSW01_00370	0.55	+0.6
68,811	+		CSW01_00370	0.57	-1.6
68,811	+		CSW01_00370	0.57	-4.1
68,811	+		CSW01_00370	0.57	-1.2
68,811	+		CSW01_00370	0.57	+2.3
68,811	+		CSW01_00370	0.57	-0.2
68,811	+		CSW01_00370	0.57	+1.1
68,819	-		CSW01_00370	0.58	-1.8
68,819	-		CSW01_00370	0.58	-0.0
68,819	-		CSW01_00370	0.58	+1.1
68,819	-		CSW01_00370	0.58	-2.2
68,819	-		CSW01_00370	0.58	+1.0
68,819	-		CSW01_00370	0.58	-1.4
68,819	-		CSW01_00370	0.58	+0.2
68,819	-		CSW01_00370	0.58	+0.6
68,819	-		CSW01_00370	0.58	-0.2
68,819	-		CSW01_00370	0.58	-2.7
68,819	-		CSW01_00370	0.58	+1.2
68,819	-		CSW01_00370	0.58	-4.3
68,838	+		CSW01_00370	0.60	+0.4
68,846	-		CSW01_00370	0.60	+0.6
68,848	+		CSW01_00370	0.61	-1.3
68,857	-		CSW01_00370	0.62	+0.0
68,870	+		CSW01_00370	0.63	-1.3
68,905	+		CSW01_00370	0.66	-2.6
68,907	+		CSW01_00370	0.67	+0.2
68,947	-		CSW01_00370	0.71	-1.0
68,996	+		CSW01_00370	0.76	+1.3
69,006	+		CSW01_00370	0.77	-2.1
69,014	-		CSW01_00370	0.78	-1.4
69,014	-		CSW01_00370	0.78	-0.9
69,064	+		CSW01_00370	0.83	-3.7
69,070	+		CSW01_00370	0.83	+0.1
69,073	-		CSW01_00370	0.84	+0.9
69,105	-		CSW01_00370	0.87	-0.8
69,138	+				-1.8
69,138	+				-0.7
69,138	-				+1.3
69,143	+				-4.2
69,146	-				-4.3
69,146	-				-3.3
69,146	-				+0.2
69,148	+				+0.5
69,148	+				-3.7
69,164	-				-1.9
69,228	+				+0.8
69,234	-				-1.2
69,245	+				+0.5
69,253	-				+0.4
69,254	-				-5.4
69,298	-				+0.3
69,313	+				+0.9
69,367	+				+0.1
69,367	+				+0.0
69,370	-				-2.2
69,417	-				+1.2
69,444	-		CSW01_00375	0.12	-3.3
69,454	-		CSW01_00375	0.13	+0.5
69,478	+		CSW01_00375	0.15	-1.3
69,478	+		CSW01_00375	0.15	+1.8
69,496	-		CSW01_00375	0.17	+0.5
69,518	-		CSW01_00375	0.18	+0.5
69,539	-		CSW01_00375	0.20	-0.2
69,542	-		CSW01_00375	0.20	-0.2
69,575	+		CSW01_00375	0.23	-0.7
69,583	-		CSW01_00375	0.24	+0.9
69,583	-		CSW01_00375	0.24	+0.1
69,585	+		CSW01_00375	0.24	-0.9
69,585	+		CSW01_00375	0.24	-3.1
69,592	+		CSW01_00375	0.25	-0.8
69,597	+		CSW01_00375	0.25	+1.4
69,621	+		CSW01_00375	0.27	+1.7
69,621	+		CSW01_00375	0.27	-2.8
69,621	+		CSW01_00375	0.27	-2.3
69,621	+		CSW01_00375	0.27	-1.9
69,621	+		CSW01_00375	0.27	-0.3
69,621	+		CSW01_00375	0.27	-1.8
69,626	+		CSW01_00375	0.27	-1.4
69,626	+		CSW01_00375	0.27	+0.1
69,628	+		CSW01_00375	0.28	+1.4
69,628	+		CSW01_00375	0.28	-0.7
69,628	+		CSW01_00375	0.28	+0.1
69,628	+		CSW01_00375	0.28	+0.3
69,628	+		CSW01_00375	0.28	+0.1
69,628	+		CSW01_00375	0.28	-3.5
69,628	+		CSW01_00375	0.28	+0.1
69,628	+		CSW01_00375	0.28	+0.2
69,628	+		CSW01_00375	0.28	+1.5
69,628	+		CSW01_00375	0.28	-0.5
69,628	+		CSW01_00375	0.28	+2.5
69,628	+		CSW01_00375	0.28	-1.0
69,628	+		CSW01_00375	0.28	-1.4
69,628	+		CSW01_00375	0.28	+0.6
69,628	+		CSW01_00375	0.28	+0.7
69,628	+		CSW01_00375	0.28	+0.9
69,628	+		CSW01_00375	0.28	+1.8
69,628	+		CSW01_00375	0.28	+1.9
69,628	+		CSW01_00375	0.28	-2.2
69,628	+		CSW01_00375	0.28	+1.9
69,628	+		CSW01_00375	0.28	-0.5
69,628	+		CSW01_00375	0.28	-0.2
69,629	-		CSW01_00375	0.28	-3.1
69,629	-		CSW01_00375	0.28	-3.5
69,636	-		CSW01_00375	0.28	-0.6
69,636	-		CSW01_00375	0.28	-0.9
69,636	-		CSW01_00375	0.28	+1.2
69,636	-		CSW01_00375	0.28	-0.8
69,636	-		CSW01_00375	0.28	-0.0
69,636	-		CSW01_00375	0.28	-2.9
69,636	-		CSW01_00375	0.28	-3.3
69,636	-		CSW01_00375	0.28	+1.6
69,636	-		CSW01_00375	0.28	+0.5
69,636	-		CSW01_00375	0.28	-2.2
69,636	-		CSW01_00375	0.28	-3.3
69,636	-		CSW01_00375	0.28	+0.8
69,636	-		CSW01_00375	0.28	-2.5
69,636	-		CSW01_00375	0.28	+0.8
69,636	-		CSW01_00375	0.28	+0.6
69,636	-		CSW01_00375	0.28	-3.5
69,636	-		CSW01_00375	0.28	-0.2
69,636	-		CSW01_00375	0.28	+0.6
69,704	+		CSW01_00375	0.34	-0.8
69,712	-		CSW01_00375	0.34	+1.5
69,712	-		CSW01_00375	0.34	-1.8
69,724	-		CSW01_00375	0.35	+0.3
69,724	-		CSW01_00375	0.35	+2.6
69,724	-		CSW01_00375	0.35	-1.2
69,733	+		CSW01_00375	0.36	+1.3
69,733	+		CSW01_00375	0.36	+0.2
69,733	+		CSW01_00375	0.36	+1.6
69,741	-		CSW01_00375	0.37	-0.2
69,764	-		CSW01_00375	0.39	-0.7
69,769	+		CSW01_00375	0.39	-3.8
69,817	+		CSW01_00375	0.43	-4.7
69,817	+		CSW01_00375	0.43	+1.1
69,817	+		CSW01_00375	0.43	+1.1
69,834	+		CSW01_00375	0.45	+0.9
69,834	+		CSW01_00375	0.45	+0.8
69,835	-		CSW01_00375	0.45	-0.0
69,838	-		CSW01_00375	0.45	-3.2
69,855	-		CSW01_00375	0.46	+1.5
69,862	+		CSW01_00375	0.47	+1.7
69,862	+		CSW01_00375	0.47	+1.6
69,868	-		CSW01_00375	0.47	+0.8
69,870	-		CSW01_00375	0.48	+1.1
69,894	+		CSW01_00375	0.50	+0.4
69,895	+		CSW01_00375	0.50	+0.5
69,895	+		CSW01_00375	0.50	-0.8
69,896	+		CSW01_00375	0.50	-4.1
69,902	+		CSW01_00375	0.50	-0.4
69,903	-		CSW01_00375	0.50	-2.3
69,903	-		CSW01_00375	0.50	+0.2
70,024	+		CSW01_00375	0.60	-0.1
70,024	+		CSW01_00375	0.60	-1.4
70,024	+		CSW01_00375	0.60	-1.1
70,031	+		CSW01_00375	0.61	+0.7
70,032	-		CSW01_00375	0.61	+0.1
70,032	-		CSW01_00375	0.61	+1.8
70,032	-		CSW01_00375	0.61	+0.2
70,044	-		CSW01_00375	0.62	+0.8
70,057	+		CSW01_00375	0.63	-0.9
70,093	+		CSW01_00375	0.66	-1.1
70,103	+		CSW01_00375	0.67	-2.9
70,111	-		CSW01_00375	0.68	-5.2
70,132	-		CSW01_00375	0.69	-0.2
70,158	+		CSW01_00375	0.72	-3.7
70,166	-		CSW01_00375	0.72	-4.0
70,177	+		CSW01_00375	0.73	-0.7
70,177	+		CSW01_00375	0.73	-1.9
70,177	+		CSW01_00375	0.73	+1.5
70,177	+		CSW01_00375	0.73	-0.0
70,177	+		CSW01_00375	0.73	+1.3
70,177	+		CSW01_00375	0.73	+0.1
70,177	+		CSW01_00375	0.73	+1.6
70,185	-		CSW01_00375	0.74	+1.3
70,185	-		CSW01_00375	0.74	-3.6
70,185	-		CSW01_00375	0.74	+0.2
70,210	-		CSW01_00375	0.76	-3.5
70,215	-		CSW01_00375	0.76	+0.7
70,215	-		CSW01_00375	0.76	-1.6
70,215	-		CSW01_00375	0.76	-1.7
70,230	+		CSW01_00375	0.78	-1.1
70,254	+		CSW01_00375	0.80	+0.1
70,260	+		CSW01_00375	0.80	+1.5
70,286	-		CSW01_00375	0.82	+0.4
70,291	-		CSW01_00375	0.83	-0.2
70,291	-		CSW01_00375	0.83	-0.1
70,293	-		CSW01_00375	0.83	+1.0
70,328	+		CSW01_00375	0.86	-1.0
70,351	+		CSW01_00375	0.88	-0.1
70,351	+		CSW01_00375	0.88	+1.4
70,359	-		CSW01_00375	0.88	-2.1
70,359	-		CSW01_00375	0.88	-3.2
70,364	+		CSW01_00375	0.89	-2.4
70,367	-		CSW01_00375	0.89	+1.1
70,374	+		CSW01_00375	0.90	-0.1
70,377	-		CSW01_00375	0.90	-3.3
70,382	+				-3.1
70,382	-				-2.8
70,390	-				+0.4
70,390	-				-3.3
70,390	-				-4.9
70,390	-				-0.8
70,409	-				+1.5
70,486	-				-1.6
70,528	+				-1.3
70,528	+				+0.2
70,528	+				-0.6
70,528	+				+0.2
70,528	+				-0.2
70,528	+				+0.1
70,536	-				-1.6
70,536	-				+0.7
70,536	-				-1.8
70,554	-				-1.8
70,576	+				-2.8
70,576	+				-3.5
70,591	+				-2.6
70,605	+				+2.2
70,771	-		CSW01_00380	0.59	-3.6
70,799	+		CSW01_00380	0.69	-3.3
70,850	+		CSW01_00380	0.87	-2.7
70,894	-				+0.2
70,944	+				+0.3
70,945	+				-4.4
70,965	+				+2.6
70,973	-				+2.4
70,973	-				-0.6
70,975	-				-2.6
70,980	+				-0.4
70,981	-				+1.7
70,988	-				-1.4
70,994	+				+0.1
70,995	-				+0.5
70,995	-				+2.2
70,995	-				-0.1
71,030	+		CSW01_00385	0.12	-0.3
71,117	+		CSW01_00385	0.31	+0.3
71,132	+		CSW01_00385	0.34	-0.2
71,132	+		CSW01_00385	0.34	+1.2
71,140	-		CSW01_00385	0.35	-3.8
71,150	-		CSW01_00385	0.38	+2.3
71,150	-		CSW01_00385	0.38	-0.3
71,241	-		CSW01_00385	0.57	+2.1
71,241	-		CSW01_00385	0.57	+0.7
71,273	+		CSW01_00385	0.64	-0.6
71,274	-		CSW01_00385	0.65	-0.0
71,281	-		CSW01_00385	0.66	+1.6
71,292	+		CSW01_00385	0.68	+1.6
71,342	+		CSW01_00385	0.79	-3.6
71,342	-		CSW01_00385	0.79	+0.6
71,413	-				-2.1
71,430	-				+0.5