Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00325

Experiment: ICP1_phage_23.5_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_00310 and CSW01_00315 are separated by 107 nucleotidesCSW01_00315 and CSW01_00320 are separated by 25 nucleotidesCSW01_00320 and CSW01_00325 are separated by 29 nucleotidesCSW01_00325 and CSW01_00330 are separated by 232 nucleotidesCSW01_00330 and CSW01_00335 are separated by 251 nucleotides CSW01_00310: CSW01_00310 - 23S ribosomal RNA, at 55,778 to 58,693 _00310 CSW01_00315: CSW01_00315 - 5S ribosomal RNA, at 58,801 to 58,916 _00315 CSW01_00320: CSW01_00320 - tRNA-Asp, at 58,942 to 59,018 _00320 CSW01_00325: CSW01_00325 - tRNA-Trp, at 59,048 to 59,124 _00325 CSW01_00330: CSW01_00330 - fluoride efflux transporter CrcB, at 59,357 to 59,737 _00330 CSW01_00335: CSW01_00335 - phosphomethylpyrimidine synthase, at 59,989 to 61,926 _00335 Position (kb) 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 59.285 kb on - strandat 59.313 kb on - strandat 59.384 kb on + strandat 59.384 kb on + strandat 59.384 kb on + strandat 59.538 kb on + strand, within CSW01_00330at 59.539 kb on + strand, within CSW01_00330at 59.539 kb on + strand, within CSW01_00330at 59.544 kb on + strand, within CSW01_00330at 59.547 kb on - strand, within CSW01_00330at 59.552 kb on - strand, within CSW01_00330at 59.682 kb on - strand, within CSW01_00330at 59.847 kb on + strandat 59.852 kb on + strandat 59.860 kb on - strandat 59.883 kb on - strandat 59.893 kb on - strandat 59.910 kb on - strandat 59.914 kb on + strandat 59.989 kb on + strandat 60.046 kb on + strandat 60.046 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
remove
59,285 - -0.7
59,313 - +1.6
59,384 + +0.7
59,384 + -0.0
59,384 + +0.2
59,538 + CSW01_00330 0.48 +0.8
59,539 + CSW01_00330 0.48 -2.3
59,539 + CSW01_00330 0.48 -0.1
59,544 + CSW01_00330 0.49 -3.7
59,547 - CSW01_00330 0.50 +0.2
59,552 - CSW01_00330 0.51 +2.4
59,682 - CSW01_00330 0.85 -3.3
59,847 + -1.4
59,852 + +1.3
59,860 - -3.7
59,883 - +0.9
59,893 - +0.5
59,910 - -0.7
59,914 + +0.3
59,989 + +1.7
60,046 + +2.9
60,046 + +2.0

Or see this region's nucleotide sequence