Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_29385

Experiment: 1-ethyl-3-methylimidazolium lysine 10.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 10.5 mM
6,383,689	+		AO353_29375	0.84	-0.5
6,383,689	+		AO353_29375	0.84	-0.3
6,383,689	+		AO353_29375	0.84	+1.3
6,383,690	-		AO353_29375	0.84	+0.7
6,383,690	-		AO353_29375	0.84	-0.2
6,383,730	+		AO353_29375	0.86	-1.4
6,383,730	+		AO353_29375	0.86	+0.1
6,383,730	+		AO353_29375	0.86	-0.9
6,383,730	+		AO353_29375	0.86	+0.6
6,383,731	-		AO353_29375	0.86	-0.4
6,383,731	-		AO353_29375	0.86	-0.0
6,383,731	-		AO353_29375	0.86	+2.0
6,383,755	+		AO353_29375	0.88	-1.3
6,383,755	+		AO353_29375	0.88	+1.7
6,383,756	-		AO353_29375	0.88	-3.5
6,383,756	-		AO353_29375	0.88	+0.9
6,383,756	-		AO353_29375	0.88	+0.2
6,383,873	+				-0.3
6,383,873	+				-0.9
6,383,874	-				-1.6
6,383,874	-				-0.6
6,383,926	+				+0.1
6,383,927	-				-0.6
6,383,927	-				+1.1
6,383,980	+				-0.6
6,383,980	+				-0.5
6,383,980	+				+0.4
6,383,980	+				-0.2
6,383,980	+				+0.7
6,383,981	-				-0.6
6,383,981	-				-0.4
6,384,050	+		AO353_29380	0.13	-0.1
6,384,056	-		AO353_29380	0.14	-0.2
6,384,326	+		AO353_29380	0.63	-0.0
6,384,465	+		AO353_29380	0.87	+0.7
6,384,465	+		AO353_29380	0.87	+0.5
6,384,465	+		AO353_29380	0.87	-0.8
6,384,465	+		AO353_29380	0.87	-0.9
6,384,465	+		AO353_29380	0.87	+0.4
6,384,465	+		AO353_29380	0.87	+0.7
6,384,465	+		AO353_29380	0.87	+0.7
6,384,465	+		AO353_29380	0.87	+0.2
6,384,465	+		AO353_29380	0.87	+1.3
6,384,466	-		AO353_29380	0.88	-0.9
6,384,533	+				+0.1
6,384,533	+				+0.5
6,384,534	-				-0.3
6,384,542	+				-0.7
6,384,542	+				+0.3
6,384,542	+				+0.1
6,384,542	+				-0.9
6,384,542	+				-0.9
6,384,543	-				+0.7
6,384,543	-				+0.2
6,384,547	+				+0.7
6,384,547	+				-0.2
6,384,547	+				+1.1
6,384,547	+				-0.1
6,384,548	-				-0.1
6,384,548	-				-0.6
6,384,548	-				-2.1
6,384,548	-				-0.3
6,384,555	+				-1.3
6,384,556	-				-1.3
6,384,556	-				-1.3
6,384,556	-				-0.3
6,384,641	+				+1.3
6,384,642	-				+0.6
6,384,642	-				+0.3
6,384,657	+				+0.8
6,384,657	+				-1.9
6,384,658	-				-2.1
6,384,658	-				+2.5
6,384,658	-				+2.3
6,384,658	-				+0.3
6,384,660	+		AO353_29385	0.10	-0.2
6,384,695	+		AO353_29385	0.13	-1.3
6,384,743	+		AO353_29385	0.18	-0.8
6,384,743	+		AO353_29385	0.18	+0.7
6,384,815	+		AO353_29385	0.25	-1.1
6,384,816	-		AO353_29385	0.25	-0.3
6,384,921	-		AO353_29385	0.35	-1.6
6,384,921	-		AO353_29385	0.35	-0.9
6,384,921	-		AO353_29385	0.35	-0.9
6,384,922	+		AO353_29385	0.35	+0.4
6,384,922	+		AO353_29385	0.35	-0.3
6,384,922	+		AO353_29385	0.35	-0.9
6,384,922	+		AO353_29385	0.35	-0.9
6,384,922	+		AO353_29385	0.35	+0.0
6,384,922	+		AO353_29385	0.35	-0.5
6,384,923	-		AO353_29385	0.35	-0.5
6,384,923	-		AO353_29385	0.35	+0.3
6,384,923	-		AO353_29385	0.35	-1.6
6,384,991	-		AO353_29385	0.42	+0.1
6,385,032	+		AO353_29385	0.46	+1.0
6,385,033	-		AO353_29385	0.46	+0.3
6,385,122	+		AO353_29385	0.54	-1.0
6,385,122	+		AO353_29385	0.54	+1.3
6,385,122	+				+0.7
6,385,123	-		AO353_29385	0.54	+0.7
6,385,123	-		AO353_29385	0.54	-0.0
6,385,123	-		AO353_29385	0.54	-0.3
6,385,123	-		AO353_29385	0.54	-0.9
6,385,163	+		AO353_29385	0.58	-0.1
6,385,163	+		AO353_29385	0.58	-0.1
6,385,163	+		AO353_29385	0.58	-1.3
6,385,164	-		AO353_29385	0.58	+1.1
6,385,164	-		AO353_29385	0.58	-0.8
6,385,167	+		AO353_29385	0.58	+0.7
6,385,167	+		AO353_29385	0.58	-0.9
6,385,167	+		AO353_29385	0.58	-0.3
6,385,242	+		AO353_29385	0.66	-0.0
6,385,242	+		AO353_29385	0.66	+1.3
6,385,242	+		AO353_29385	0.66	-0.6
6,385,242	+		AO353_29385	0.66	-0.5
6,385,242	+		AO353_29385	0.66	-1.4
6,385,243	-		AO353_29385	0.66	-0.9
6,385,253	+		AO353_29385	0.67	-0.0
6,385,253	+		AO353_29385	0.67	-1.1
6,385,253	+		AO353_29385	0.67	+2.3
6,385,253	+		AO353_29385	0.67	-0.9
6,385,253	+		AO353_29385	0.67	-0.8
6,385,254	-		AO353_29385	0.67	-0.0
6,385,254	-		AO353_29385	0.67	-0.8
6,385,254	-		AO353_29385	0.67	-0.6
6,385,254	-		AO353_29385	0.67	-0.3
6,385,257	+		AO353_29385	0.67	+0.7
6,385,257	+				-0.9
6,385,258	-		AO353_29385	0.67	-0.6
6,385,258	-		AO353_29385	0.67	-2.8
6,385,258	-		AO353_29385	0.67	-0.1
6,385,274	+		AO353_29385	0.69	+0.4
6,385,312	-		AO353_29385	0.72	-0.3
6,385,312	-		AO353_29385	0.72	-0.0
6,385,350	+		AO353_29385	0.76	+0.7
6,385,350	+		AO353_29385	0.76	-1.6
6,385,350	+		AO353_29385	0.76	-0.6
6,385,350	+		AO353_29385	0.76	+0.7
6,385,350	+		AO353_29385	0.76	+0.7
6,385,350	+		AO353_29385	0.76	-0.9
6,385,350	+		AO353_29385	0.76	-1.0
6,385,350	+		AO353_29385	0.76	-2.6
6,385,351	-		AO353_29385	0.76	-0.7
6,385,351	-		AO353_29385	0.76	+0.1
6,385,351	-		AO353_29385	0.76	+0.1
6,385,351	-		AO353_29385	0.76	-0.3
6,385,351	-		AO353_29385	0.76	-0.9
6,385,351	-		AO353_29385	0.76	-0.4
6,385,385	-		AO353_29385	0.79	+0.7
6,385,392	+		AO353_29385	0.80	-0.6
6,385,393	-		AO353_29385	0.80	-1.4
6,385,472	+		AO353_29385	0.87	-0.0
6,385,472	+		AO353_29385	0.87	-1.1
6,385,472	+		AO353_29385	0.87	+0.7
6,385,473	-		AO353_29385	0.88	-0.2
6,385,473	-		AO353_29385	0.88	-0.3
6,385,473	-		AO353_29385	0.88	+1.7
6,385,473	-		AO353_29385	0.88	-1.0
6,385,473	-		AO353_29385	0.88	-0.9
6,385,473	-		AO353_29385	0.88	-0.2
6,385,511	+				-0.6
6,385,512	-				+0.1
6,385,512	-				-0.0
6,385,544	+				-1.3
6,385,544	+				-2.4
6,385,544	+				+1.5
6,385,544	+				-0.9
6,385,544	+				-1.7
6,385,544	+				+0.7
6,385,544	+				+1.5
6,385,544	+				+1.4
6,385,544	+				-1.7
6,385,544	+				-0.0
6,385,544	+				+1.7
6,385,545	-				+2.3
6,385,545	-				-0.6
6,385,545	-				+0.1
6,385,545	-				+0.7
6,385,545	-				-0.3
6,385,617	+				-0.6
6,385,684	+				+1.0
6,385,684	+				+0.1
6,385,684	+				+1.6
6,385,685	-				-0.9
6,385,685	-				+0.4
6,385,685	-				-0.9
6,385,694	-				+1.7
6,385,695	+				-1.2
6,385,695	+				-2.3
6,385,695	+				-0.3
6,385,695	+				+0.7
6,385,695	+				-1.9
6,385,696	-				-1.9
6,385,696	-				+0.9
6,385,696	-				-0.5
6,385,696	-				-2.1
6,385,696	-				+1.7
6,385,696	-				-1.5
6,385,696	-				+0.3
6,385,696	-				-2.8
6,385,762	+				+1.7
6,385,762	+				-0.3
6,385,762	+				-1.6
6,385,762	+				-1.8
6,385,762	+				+1.0
6,385,762	+				+1.9
6,385,762	+				-1.4
6,385,762	+				-1.6
6,385,762	+				-1.6
6,385,762	+				-1.6
6,385,763	-				-0.9
6,385,763	-				-0.5
6,385,763	-				-0.6
6,385,763	-				+1.4
6,385,763	-				+1.4
6,385,763	-				+0.7
6,385,763	-				-1.1
6,385,763	-				-0.0
6,385,763	-				-1.3
6,385,763	-				-1.9
6,385,834	-				+0.2
6,385,851	+				+0.7
6,385,851	+				-0.7
6,385,851	+				+2.0
6,385,852	-				-0.1
6,385,863	+		AO353_29390	0.11	-0.5
6,385,863	+		AO353_29390	0.11	+3.3
6,385,863	+		AO353_29390	0.11	-1.6
6,385,863	+		AO353_29390	0.11	-1.3
6,385,863	+		AO353_29390	0.11	+0.4
6,385,864	-		AO353_29390	0.12	-0.9
6,385,864	-		AO353_29390	0.12	-0.5
6,385,864	-		AO353_29390	0.12	+0.4
6,385,864	-		AO353_29390	0.12	+0.2
6,385,864	-		AO353_29390	0.12	+2.3
6,385,864	-		AO353_29390	0.12	+0.4
6,385,864	-		AO353_29390	0.12	-1.1
6,385,864	-		AO353_29390	0.12	-0.1
6,386,060	+		AO353_29390	0.64	+0.7
6,386,060	+		AO353_29390	0.64	+1.3
6,386,060	+		AO353_29390	0.64	+0.3
6,386,060	+		AO353_29390	0.64	-1.6
6,386,060	+		AO353_29390	0.64	-0.6
6,386,060	+		AO353_29390	0.64	-0.0
6,386,060	+		AO353_29390	0.64	-1.6
6,386,060	+		AO353_29390	0.64	+0.1
6,386,060	+		AO353_29390	0.64	+0.2
6,386,060	+		AO353_29390	0.64	+1.0
6,386,060	+		AO353_29390	0.64	+0.1
6,386,060	+		AO353_29390	0.64	-2.1
6,386,060	+		AO353_29390	0.64	-1.3
6,386,060	+		AO353_29390	0.64	+0.2
6,386,060	+		AO353_29390	0.64	-0.5
6,386,060	+		AO353_29390	0.64	+1.0
6,386,060	+		AO353_29390	0.64	-0.3
6,386,061	-		AO353_29390	0.64	-2.3
6,386,061	-		AO353_29390	0.64	+0.4
6,386,061	-		AO353_29390	0.64	+1.0
6,386,061	-		AO353_29390	0.64	+3.0
6,386,061	-		AO353_29390	0.64	-1.1
6,386,061	-		AO353_29390	0.64	+1.8
6,386,061	-		AO353_29390	0.64	+1.0
6,386,061	-		AO353_29390	0.64	+1.3
6,386,061	-		AO353_29390	0.64	+1.9
6,386,061	-		AO353_29390	0.64	-0.5
6,386,076	+		AO353_29390	0.68	+0.1
6,386,077	-		AO353_29390	0.69	-0.9
6,386,077	-		AO353_29390	0.69	-1.6
6,386,078	+		AO353_29390	0.69	-0.8
6,386,103	+		AO353_29390	0.75	-2.2
6,386,104	-		AO353_29390	0.76	+0.1
6,386,110	-		AO353_29390	0.77	+1.7
6,386,150	+		AO353_29390	0.88	-1.1
6,386,150	+		AO353_29390	0.88	-0.6
6,386,150	+		AO353_29390	0.88	+0.1
6,386,150	+		AO353_29390	0.88	-0.7
6,386,150	+		AO353_29390	0.88	+0.7
6,386,150	+		AO353_29390	0.88	-0.0
6,386,150	+		AO353_29390	0.88	-1.5
6,386,150	+		AO353_29390	0.88	-1.1
6,386,150	+		AO353_29390	0.88	+2.1
6,386,150	+		AO353_29390	0.88	-0.1
6,386,150	+		AO353_29390	0.88	+0.2
6,386,150	+		AO353_29390	0.88	-0.9
6,386,150	+		AO353_29390	0.88	-1.2
6,386,151	-		AO353_29390	0.88	+0.7
6,386,151	-		AO353_29390	0.88	-1.9
6,386,151	-		AO353_29390	0.88	+1.5
6,386,151	-		AO353_29390	0.88	-1.7
6,386,151	-		AO353_29390	0.88	+0.0
6,386,151	-		AO353_29390	0.88	-0.2
6,386,192	+				-1.5
6,386,192	+				-1.4
6,386,192	+				-0.5
6,386,192	+				-1.9
6,386,193	-				+0.7
6,386,193	-				-0.0
6,386,193	-				-1.7
6,386,193	-				+0.7