Experiment: 1-ethyl-3-methylimidazolium lysine 10.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25810 and AO353_25815 are separated by 344 nucleotides AO353_25815 and AO353_25820 are separated by 281 nucleotides
AO353_25810: AO353_25810 - Fis family transcriptional regulator, at 5,688,313 to 5,689,638
_25810
AO353_25815: AO353_25815 - hypothetical protein, at 5,689,983 to 5,690,249
_25815
AO353_25820: AO353_25820 - hypothetical protein, at 5,690,531 to 5,691,820
_25820
Position (kb) 5689
5690
5691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5689.077 kb on + strand, within AO353_25810 at 5689.078 kb on - strand, within AO353_25810 at 5689.078 kb on - strand, within AO353_25810 at 5689.336 kb on - strand, within AO353_25810 at 5689.336 kb on - strand, within AO353_25810 at 5689.336 kb on - strand, within AO353_25810 at 5689.480 kb on - strand, within AO353_25810 at 5689.480 kb on - strand, within AO353_25810 at 5689.530 kb on + strand at 5689.531 kb on - strand at 5689.531 kb on - strand at 5689.558 kb on - strand at 5689.573 kb on + strand at 5689.607 kb on - strand at 5689.703 kb on + strand at 5689.704 kb on - strand at 5689.733 kb on + strand at 5689.734 kb on - strand at 5689.741 kb on - strand at 5689.743 kb on + strand at 5689.743 kb on + strand at 5689.743 kb on + strand at 5689.744 kb on - strand at 5689.744 kb on - strand at 5689.747 kb on - strand at 5689.747 kb on - strand at 5689.747 kb on - strand at 5689.763 kb on - strand at 5689.769 kb on + strand at 5689.782 kb on + strand at 5689.846 kb on + strand at 5689.847 kb on - strand at 5689.848 kb on + strand at 5689.849 kb on - strand at 5689.909 kb on + strand at 5689.910 kb on - strand at 5689.910 kb on - strand at 5689.910 kb on - strand at 5689.915 kb on + strand at 5689.915 kb on + strand at 5689.916 kb on - strand at 5689.916 kb on - strand at 5690.037 kb on - strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.151 kb on + strand, within AO353_25815 at 5690.152 kb on - strand, within AO353_25815 at 5690.152 kb on - strand, within AO353_25815 at 5690.152 kb on - strand, within AO353_25815 at 5690.152 kb on - strand, within AO353_25815 at 5690.296 kb on + strand at 5690.361 kb on + strand at 5690.361 kb on + strand at 5690.361 kb on + strand at 5690.361 kb on + strand at 5690.362 kb on - strand at 5690.363 kb on + strand at 5690.363 kb on + strand at 5690.363 kb on + strand at 5690.364 kb on - strand at 5690.470 kb on + strand at 5690.647 kb on + strand at 5690.647 kb on + strand at 5690.648 kb on - strand at 5690.648 kb on - strand at 5690.742 kb on + strand, within AO353_25820 at 5690.743 kb on - strand, within AO353_25820 at 5690.879 kb on + strand, within AO353_25820 at 5691.101 kb on + strand, within AO353_25820 at 5691.102 kb on - strand, within AO353_25820 at 5691.212 kb on - strand, within AO353_25820
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10.5 mM remove 5,689,077 + AO353_25810 0.58 -0.7 5,689,078 - AO353_25810 0.58 -1.3 5,689,078 - AO353_25810 0.58 -0.2 5,689,336 - AO353_25810 0.77 +0.3 5,689,336 - AO353_25810 0.77 +1.0 5,689,336 - AO353_25810 0.77 +0.3 5,689,480 - AO353_25810 0.88 +1.7 5,689,480 - AO353_25810 0.88 +0.2 5,689,530 + -0.5 5,689,531 - -0.0 5,689,531 - -0.5 5,689,558 - +0.8 5,689,573 + -0.5 5,689,607 - +0.5 5,689,703 + +1.2 5,689,704 - -0.8 5,689,733 + -0.0 5,689,734 - -0.8 5,689,741 - -0.1 5,689,743 + -0.2 5,689,743 + -0.7 5,689,743 + +0.0 5,689,744 - +0.1 5,689,744 - -2.1 5,689,747 - -1.6 5,689,747 - +0.0 5,689,747 - +0.1 5,689,763 - -1.8 5,689,769 + +0.8 5,689,782 + -2.7 5,689,846 + -1.3 5,689,847 - -1.5 5,689,848 + -2.3 5,689,849 - -0.2 5,689,909 + -1.8 5,689,910 - +0.3 5,689,910 - -1.3 5,689,910 - -1.2 5,689,915 + +0.3 5,689,915 + +0.1 5,689,916 - +2.1 5,689,916 - +0.2 5,690,037 - AO353_25815 0.20 -0.7 5,690,151 + AO353_25815 0.63 -1.1 5,690,151 + AO353_25815 0.63 -1.1 5,690,151 + AO353_25815 0.63 +0.5 5,690,151 + AO353_25815 0.63 -0.5 5,690,151 + AO353_25815 0.63 -0.3 5,690,151 + AO353_25815 0.63 -0.9 5,690,151 + AO353_25815 0.63 -0.3 5,690,152 - AO353_25815 0.63 +0.2 5,690,152 - AO353_25815 0.63 -0.9 5,690,152 - AO353_25815 0.63 +0.2 5,690,152 - AO353_25815 0.63 -1.1 5,690,296 + -0.9 5,690,361 + -0.1 5,690,361 + +0.9 5,690,361 + +1.7 5,690,361 + +0.9 5,690,362 - +0.8 5,690,363 + -1.2 5,690,363 + -2.0 5,690,363 + -0.7 5,690,364 - -1.8 5,690,470 + +0.5 5,690,647 + -1.1 5,690,647 + +0.2 5,690,648 - -0.5 5,690,648 - +0.5 5,690,742 + AO353_25820 0.16 -1.1 5,690,743 - AO353_25820 0.16 +0.5 5,690,879 + AO353_25820 0.27 +1.5 5,691,101 + AO353_25820 0.44 +0.3 5,691,102 - AO353_25820 0.44 -1.3 5,691,212 - AO353_25820 0.53 +0.3
Or see this region's nucleotide sequence