Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03850

Experiment: 1-ethyl-3-methylimidazolium lysine 10.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_03840 and AO353_03845 are separated by 18 nucleotidesAO353_03845 and AO353_03850 overlap by 4 nucleotidesAO353_03850 and AO353_03855 are separated by 149 nucleotides AO353_03840: AO353_03840 - ABC transporter ATP-binding protein, at 820,385 to 821,440 _03840 AO353_03845: AO353_03845 - ABC transporter permease, at 821,459 to 822,307 _03845 AO353_03850: AO353_03850 - ABC transporter permease, at 822,304 to 823,212 _03850 AO353_03855: AO353_03855 - spermidine/putrescine ABC transporter substrate-binding protein, at 823,362 to 824,465 _03855 Position (kb) 822 823 824Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 821.345 kb on + strandat 821.345 kb on + strandat 821.346 kb on - strandat 821.346 kb on - strandat 821.440 kb on + strandat 821.440 kb on + strandat 821.440 kb on + strandat 821.440 kb on + strandat 821.440 kb on + strandat 821.441 kb on - strandat 821.441 kb on - strandat 821.441 kb on - strandat 821.441 kb on - strandat 821.441 kb on - strandat 821.441 kb on - strandat 821.443 kb on + strandat 821.443 kb on + strandat 821.443 kb on + strandat 821.443 kb on + strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.447 kb on + strandat 821.447 kb on + strandat 821.447 kb on + strandat 821.447 kb on + strandat 821.447 kb on + strandat 821.448 kb on - strandat 821.448 kb on - strandat 821.448 kb on - strandat 821.549 kb on + strand, within AO353_03845at 821.549 kb on + strand, within AO353_03845at 821.550 kb on - strand, within AO353_03845at 821.550 kb on - strand, within AO353_03845at 821.593 kb on + strand, within AO353_03845at 821.593 kb on + strand, within AO353_03845at 821.594 kb on - strand, within AO353_03845at 821.619 kb on + strand, within AO353_03845at 821.619 kb on + strand, within AO353_03845at 821.620 kb on - strand, within AO353_03845at 821.620 kb on - strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.909 kb on + strand, within AO353_03845at 821.910 kb on - strand, within AO353_03845at 821.991 kb on + strand, within AO353_03845at 821.991 kb on + strand, within AO353_03845at 821.991 kb on + strand, within AO353_03845at 821.992 kb on - strand, within AO353_03845at 821.992 kb on - strand, within AO353_03845at 821.992 kb on - strand, within AO353_03845at 821.992 kb on - strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.127 kb on - strand, within AO353_03845at 822.127 kb on - strand, within AO353_03845at 822.127 kb on - strand, within AO353_03845at 822.127 kb on - strand, within AO353_03845at 822.141 kb on + strand, within AO353_03845at 822.142 kb on - strand, within AO353_03845at 822.347 kb on + strandat 822.347 kb on + strandat 822.348 kb on - strandat 822.348 kb on - strandat 822.348 kb on - strandat 822.348 kb on - strandat 822.516 kb on - strand, within AO353_03850at 822.626 kb on + strand, within AO353_03850at 822.626 kb on + strand, within AO353_03850at 822.626 kb on + strand, within AO353_03850at 822.627 kb on - strand, within AO353_03850at 822.627 kb on - strand, within AO353_03850at 822.627 kb on - strand, within AO353_03850at 822.627 kb on - strand, within AO353_03850at 822.627 kb on - strand, within AO353_03850at 822.691 kb on + strand, within AO353_03850at 822.691 kb on + strand, within AO353_03850at 822.692 kb on - strand, within AO353_03850at 822.706 kb on + strand, within AO353_03850at 822.707 kb on - strand, within AO353_03850at 822.707 kb on - strand, within AO353_03850at 822.707 kb on - strand, within AO353_03850at 822.707 kb on - strand, within AO353_03850at 822.707 kb on - strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.722 kb on + strand, within AO353_03850at 822.812 kb on + strand, within AO353_03850at 822.812 kb on + strand, within AO353_03850at 822.813 kb on - strand, within AO353_03850at 822.905 kb on + strand, within AO353_03850at 822.905 kb on + strand, within AO353_03850at 822.905 kb on + strand, within AO353_03850at 822.905 kb on + strand, within AO353_03850at 822.906 kb on - strand, within AO353_03850at 822.906 kb on - strand, within AO353_03850at 822.906 kb on - strand, within AO353_03850at 822.906 kb on - strand, within AO353_03850at 822.929 kb on - strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.986 kb on + strand, within AO353_03850at 822.987 kb on - strand, within AO353_03850at 822.987 kb on - strand, within AO353_03850at 822.987 kb on - strand, within AO353_03850at 822.989 kb on + strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 822.990 kb on - strand, within AO353_03850at 823.010 kb on + strand, within AO353_03850at 823.010 kb on + strand, within AO353_03850at 823.010 kb on + strand, within AO353_03850at 823.011 kb on - strand, within AO353_03850at 823.011 kb on - strand, within AO353_03850at 823.126 kb on + strandat 823.127 kb on - strandat 823.212 kb on + strandat 823.212 kb on + strandat 823.212 kb on + strandat 823.287 kb on + strandat 823.293 kb on + strandat 823.293 kb on + strandat 823.293 kb on + strandat 823.293 kb on + strandat 823.293 kb on + strandat 823.294 kb on - strandat 823.294 kb on - strandat 823.294 kb on - strandat 823.294 kb on - strandat 823.309 kb on + strandat 823.309 kb on + strandat 823.309 kb on + strandat 823.474 kb on + strand, within AO353_03855at 823.474 kb on + strand, within AO353_03855at 823.474 kb on + strand, within AO353_03855at 823.474 kb on + strand, within AO353_03855at 823.474 kb on + strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.475 kb on - strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.531 kb on + strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.532 kb on - strand, within AO353_03855at 823.591 kb on + strand, within AO353_03855at 823.591 kb on + strand, within AO353_03855at 823.651 kb on + strand, within AO353_03855at 823.651 kb on + strand, within AO353_03855at 823.651 kb on + strand, within AO353_03855at 823.652 kb on - strand, within AO353_03855at 823.690 kb on + strand, within AO353_03855at 823.690 kb on + strand, within AO353_03855at 823.690 kb on + strand, within AO353_03855at 823.690 kb on + strand, within AO353_03855at 823.691 kb on - strand, within AO353_03855at 823.691 kb on - strand, within AO353_03855at 823.691 kb on - strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.732 kb on + strand, within AO353_03855at 823.733 kb on - strand, within AO353_03855at 823.733 kb on - strand, within AO353_03855at 823.733 kb on - strand, within AO353_03855at 823.733 kb on - strand, within AO353_03855at 823.733 kb on - strand, within AO353_03855at 823.969 kb on + strand, within AO353_03855at 823.969 kb on + strand, within AO353_03855at 823.969 kb on + strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 823.970 kb on - strand, within AO353_03855at 824.005 kb on + strand, within AO353_03855at 824.006 kb on - strand, within AO353_03855at 824.033 kb on - strand, within AO353_03855at 824.066 kb on - strand, within AO353_03855at 824.176 kb on + strand, within AO353_03855at 824.176 kb on + strand, within AO353_03855at 824.177 kb on - strand, within AO353_03855at 824.177 kb on - strand, within AO353_03855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10.5 mM
remove
821,345 + -1.3
821,345 + -0.8
821,346 - +0.0
821,346 - +0.2
821,440 + +0.4
821,440 + +0.0
821,440 + -0.4
821,440 + -0.6
821,440 + -0.8
821,441 - +1.5
821,441 - -0.3
821,441 - -1.6
821,441 - +1.4
821,441 - +2.6
821,441 - -0.8
821,443 + -0.2
821,443 + +0.6
821,443 + -0.6
821,443 + +0.1
821,444 - +0.6
821,444 - -0.3
821,444 - +0.2
821,444 - +0.5
821,444 - +0.0
821,444 - -1.3
821,444 - +0.6
821,444 - -1.6
821,444 - -2.1
821,444 - -0.9
821,444 - +0.3
821,447 + +0.5
821,447 + -0.7
821,447 + -0.8
821,447 + -1.6
821,447 + -0.1
821,448 - +0.0
821,448 - -0.6
821,448 - -0.3
821,549 + AO353_03845 0.11 -1.0
821,549 + AO353_03845 0.11 -0.1
821,550 - AO353_03845 0.11 +0.2
821,550 - AO353_03845 0.11 +0.8
821,593 + AO353_03845 0.16 +1.0
821,593 + AO353_03845 0.16 +2.6
821,594 - AO353_03845 0.16 -0.4
821,619 + AO353_03845 0.19 -1.3
821,619 + AO353_03845 0.19 +1.6
821,620 - AO353_03845 0.19 -1.8
821,620 - AO353_03845 0.19 -2.6
821,628 + AO353_03845 0.20 +0.6
821,628 + AO353_03845 0.20 -1.1
821,628 + AO353_03845 0.20 +0.0
821,628 + AO353_03845 0.20 +0.0
821,628 + AO353_03845 0.20 -0.8
821,628 + AO353_03845 0.20 -1.1
821,628 + AO353_03845 0.20 -0.2
821,628 + AO353_03845 0.20 -1.5
821,628 + AO353_03845 0.20 +0.0
821,629 - AO353_03845 0.20 +0.3
821,629 - AO353_03845 0.20 -0.8
821,629 - AO353_03845 0.20 +0.4
821,629 - AO353_03845 0.20 -1.6
821,629 - AO353_03845 0.20 +1.1
821,629 - AO353_03845 0.20 -0.6
821,629 - AO353_03845 0.20 -1.0
821,629 - AO353_03845 0.20 -0.1
821,629 - AO353_03845 0.20 -0.0
821,629 - AO353_03845 0.20 -1.2
821,629 - AO353_03845 0.20 +0.0
821,629 - AO353_03845 0.20 +0.8
821,909 + AO353_03845 0.53 -0.1
821,910 - AO353_03845 0.53 +0.1
821,991 + AO353_03845 0.63 -0.5
821,991 + AO353_03845 0.63 -0.6
821,991 + AO353_03845 0.63 -0.3
821,992 - AO353_03845 0.63 +0.7
821,992 - AO353_03845 0.63 -1.8
821,992 - AO353_03845 0.63 -1.7
821,992 - AO353_03845 0.63 +0.6
822,126 + AO353_03845 0.79 +0.0
822,126 + AO353_03845 0.79 +0.9
822,126 + AO353_03845 0.79 +1.6
822,126 + AO353_03845 0.79 -0.2
822,126 + AO353_03845 0.79 -2.1
822,126 + AO353_03845 0.79 -0.7
822,127 - AO353_03845 0.79 +0.2
822,127 - AO353_03845 0.79 +0.2
822,127 - AO353_03845 0.79 -0.2
822,127 - AO353_03845 0.79 +0.0
822,141 + AO353_03845 0.80 +0.5
822,142 - AO353_03845 0.80 -2.4
822,347 + -0.6
822,347 + +1.2
822,348 - +0.4
822,348 - +0.3
822,348 - -0.3
822,348 - -1.4
822,516 - AO353_03850 0.23 +1.2
822,626 + AO353_03850 0.35 -0.8
822,626 + AO353_03850 0.35 -1.1
822,626 + AO353_03850 0.35 -1.3
822,627 - AO353_03850 0.36 +2.0
822,627 - AO353_03850 0.36 -0.5
822,627 - AO353_03850 0.36 -1.1
822,627 - AO353_03850 0.36 -0.8
822,627 - AO353_03850 0.36 +0.0
822,691 + AO353_03850 0.43 -0.4
822,691 + AO353_03850 0.43 +0.0
822,692 - AO353_03850 0.43 +0.0
822,706 + AO353_03850 0.44 -0.6
822,707 - AO353_03850 0.44 -0.6
822,707 - AO353_03850 0.44 -0.8
822,707 - AO353_03850 0.44 +0.2
822,707 - AO353_03850 0.44 -1.4
822,707 - AO353_03850 0.44 +0.0
822,722 + AO353_03850 0.46 -0.5
822,722 + AO353_03850 0.46 -0.7
822,722 + AO353_03850 0.46 +0.6
822,722 + AO353_03850 0.46 -2.1
822,722 + AO353_03850 0.46 -1.0
822,722 + AO353_03850 0.46 -1.1
822,722 + AO353_03850 0.46 +0.7
822,812 + AO353_03850 0.56 +0.3
822,812 + AO353_03850 0.56 +0.2
822,813 - AO353_03850 0.56 -0.8
822,905 + AO353_03850 0.66 -1.0
822,905 + AO353_03850 0.66 -2.9
822,905 + AO353_03850 0.66 +1.5
822,905 + AO353_03850 0.66 +1.0
822,906 - AO353_03850 0.66 -1.8
822,906 - AO353_03850 0.66 +0.0
822,906 - AO353_03850 0.66 -1.8
822,906 - AO353_03850 0.66 -0.1
822,929 - AO353_03850 0.69 -0.8
822,986 + AO353_03850 0.75 -0.3
822,986 + AO353_03850 0.75 -1.0
822,986 + AO353_03850 0.75 +0.9
822,986 + AO353_03850 0.75 -0.6
822,986 + AO353_03850 0.75 +0.2
822,986 + AO353_03850 0.75 +1.0
822,986 + AO353_03850 0.75 -0.8
822,986 + AO353_03850 0.75 +0.2
822,987 - AO353_03850 0.75 -0.6
822,987 - AO353_03850 0.75 -1.3
822,987 - AO353_03850 0.75 +1.0
822,989 + AO353_03850 0.75 -0.7
822,990 - AO353_03850 0.75 -1.7
822,990 - AO353_03850 0.75 -1.1
822,990 - AO353_03850 0.75 +0.8
822,990 - AO353_03850 0.75 -0.7
822,990 - AO353_03850 0.75 +0.4
822,990 - AO353_03850 0.75 +0.6
823,010 + AO353_03850 0.78 -2.6
823,010 + AO353_03850 0.78 -1.5
823,010 + AO353_03850 0.78 -1.0
823,011 - AO353_03850 0.78 -0.6
823,011 - AO353_03850 0.78 +0.0
823,126 + +0.1
823,127 - -0.6
823,212 + -1.8
823,212 + +1.0
823,212 + +0.7
823,287 + -0.4
823,293 + +1.2
823,293 + -1.1
823,293 + +0.3
823,293 + -0.4
823,293 + +0.9
823,294 - -0.3
823,294 - -2.1
823,294 - +0.5
823,294 - -1.4
823,309 + +0.7
823,309 + -0.2
823,309 + -1.8
823,474 + AO353_03855 0.10 +0.0
823,474 + AO353_03855 0.10 +0.7
823,474 + AO353_03855 0.10 +0.8
823,474 + AO353_03855 0.10 -0.4
823,474 + AO353_03855 0.10 +0.1
823,475 - AO353_03855 0.10 -0.2
823,475 - AO353_03855 0.10 -0.3
823,475 - AO353_03855 0.10 +0.4
823,475 - AO353_03855 0.10 +0.0
823,475 - AO353_03855 0.10 -0.6
823,475 - AO353_03855 0.10 +0.5
823,531 + AO353_03855 0.15 +0.0
823,531 + AO353_03855 0.15 +0.0
823,531 + AO353_03855 0.15 +0.0
823,531 + AO353_03855 0.15 +0.3
823,531 + AO353_03855 0.15 -1.6
823,531 + AO353_03855 0.15 +0.3
823,531 + AO353_03855 0.15 +0.1
823,531 + AO353_03855 0.15 -1.5
823,531 + AO353_03855 0.15 +0.2
823,531 + AO353_03855 0.15 +0.0
823,531 + AO353_03855 0.15 +0.8
823,531 + AO353_03855 0.15 +0.4
823,532 - AO353_03855 0.15 -0.2
823,532 - AO353_03855 0.15 -1.0
823,532 - AO353_03855 0.15 -1.3
823,532 - AO353_03855 0.15 -2.0
823,532 - AO353_03855 0.15 +0.5
823,532 - AO353_03855 0.15 -1.8
823,532 - AO353_03855 0.15 -1.3
823,532 - AO353_03855 0.15 +1.2
823,532 - AO353_03855 0.15 +0.7
823,532 - AO353_03855 0.15 +2.0
823,532 - AO353_03855 0.15 -0.3
823,532 - AO353_03855 0.15 +0.0
823,532 - AO353_03855 0.15 -2.7
823,532 - AO353_03855 0.15 -1.6
823,532 - AO353_03855 0.15 +0.6
823,591 + AO353_03855 0.21 -0.9
823,591 + AO353_03855 0.21 +1.0
823,651 + AO353_03855 0.26 +0.6
823,651 + AO353_03855 0.26 -0.8
823,651 + AO353_03855 0.26 +1.3
823,652 - AO353_03855 0.26 -1.0
823,690 + AO353_03855 0.30 -1.3
823,690 + AO353_03855 0.30 +0.0
823,690 + AO353_03855 0.30 -0.2
823,690 + AO353_03855 0.30 +0.4
823,691 - AO353_03855 0.30 -0.4
823,691 - AO353_03855 0.30 -0.8
823,691 - AO353_03855 0.30 +0.6
823,732 + AO353_03855 0.34 -1.3
823,732 + AO353_03855 0.34 -1.0
823,732 + AO353_03855 0.34 +0.1
823,732 + AO353_03855 0.34 -0.2
823,732 + AO353_03855 0.34 +0.8
823,732 + AO353_03855 0.34 +0.2
823,732 + AO353_03855 0.34 +0.0
823,732 + AO353_03855 0.34 +2.0
823,733 - AO353_03855 0.34 +0.7
823,733 - AO353_03855 0.34 -0.3
823,733 - AO353_03855 0.34 +0.0
823,733 - AO353_03855 0.34 -0.9
823,733 - AO353_03855 0.34 +1.5
823,969 + AO353_03855 0.55 -0.6
823,969 + AO353_03855 0.55 -1.6
823,969 + AO353_03855 0.55 +0.4
823,970 - AO353_03855 0.55 +0.2
823,970 - AO353_03855 0.55 +1.0
823,970 - AO353_03855 0.55 -0.5
823,970 - AO353_03855 0.55 +0.2
823,970 - AO353_03855 0.55 +0.3
823,970 - AO353_03855 0.55 +0.4
824,005 + AO353_03855 0.58 +0.4
824,006 - AO353_03855 0.58 -0.3
824,033 - AO353_03855 0.61 +0.9
824,066 - AO353_03855 0.64 -0.8
824,176 + AO353_03855 0.74 +0.2
824,176 + AO353_03855 0.74 -0.1
824,177 - AO353_03855 0.74 -2.0
824,177 - AO353_03855 0.74 +1.3

Or see this region's nucleotide sequence