Experiment: 1-ethyl-3-methylimidazolium lysine 10.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03150 and AO353_03155 are separated by 76 nucleotides AO353_03155 and AO353_03160 are separated by 268 nucleotides AO353_03160 and AO353_03165 are separated by 278 nucleotides
AO353_03150: AO353_03150 - peptidase M4, at 672,514 to 672,834
_03150
AO353_03155: AO353_03155 - hypothetical protein, at 672,911 to 673,282
_03155
AO353_03160: AO353_03160 - chemotaxis protein, at 673,551 to 675,176
_03160
AO353_03165: AO353_03165 - magnesium transporter CorA, at 675,455 to 676,477
_03165
Position (kb) 673
674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 672.733 kb on + strand, within AO353_03150 at 672.733 kb on + strand, within AO353_03150 at 672.734 kb on - strand, within AO353_03150 at 672.739 kb on + strand, within AO353_03150 at 672.740 kb on - strand, within AO353_03150 at 672.740 kb on - strand, within AO353_03150 at 672.740 kb on - strand, within AO353_03150 at 672.740 kb on - strand, within AO353_03150 at 672.740 kb on - strand, within AO353_03150 at 672.816 kb on + strand at 672.816 kb on + strand at 672.816 kb on + strand at 672.816 kb on + strand at 672.817 kb on - strand at 672.817 kb on - strand at 672.817 kb on - strand at 672.817 kb on - strand at 672.819 kb on + strand at 672.819 kb on + strand at 672.819 kb on + strand at 672.820 kb on - strand at 672.820 kb on - strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.833 kb on - strand at 672.833 kb on - strand at 672.833 kb on - strand at 672.833 kb on - strand at 672.833 kb on - strand at 672.932 kb on + strand at 672.932 kb on + strand at 672.933 kb on - strand at 672.933 kb on - strand at 672.933 kb on - strand at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.962 kb on - strand, within AO353_03155 at 672.962 kb on - strand, within AO353_03155 at 672.962 kb on - strand, within AO353_03155 at 672.962 kb on - strand, within AO353_03155 at 672.968 kb on + strand, within AO353_03155 at 672.968 kb on + strand, within AO353_03155 at 672.968 kb on + strand, within AO353_03155 at 672.968 kb on + strand, within AO353_03155 at 672.968 kb on + strand, within AO353_03155 at 672.969 kb on - strand, within AO353_03155 at 672.969 kb on - strand, within AO353_03155 at 672.969 kb on - strand, within AO353_03155 at 672.969 kb on - strand, within AO353_03155 at 672.971 kb on + strand, within AO353_03155 at 672.971 kb on + strand at 672.971 kb on + strand, within AO353_03155 at 672.971 kb on + strand, within AO353_03155 at 672.971 kb on + strand, within AO353_03155 at 672.971 kb on + strand, within AO353_03155 at 672.971 kb on + strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 673.017 kb on + strand, within AO353_03155 at 673.017 kb on + strand, within AO353_03155 at 673.017 kb on + strand, within AO353_03155 at 673.018 kb on - strand, within AO353_03155 at 673.018 kb on - strand, within AO353_03155 at 673.018 kb on - strand, within AO353_03155 at 673.018 kb on - strand, within AO353_03155 at 673.018 kb on - strand, within AO353_03155 at 673.043 kb on - strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.061 kb on - strand, within AO353_03155 at 673.093 kb on + strand, within AO353_03155 at 673.094 kb on - strand, within AO353_03155 at 673.108 kb on + strand, within AO353_03155 at 673.108 kb on + strand, within AO353_03155 at 673.108 kb on + strand, within AO353_03155 at 673.108 kb on + strand, within AO353_03155 at 673.112 kb on + strand, within AO353_03155 at 673.112 kb on + strand, within AO353_03155 at 673.112 kb on + strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.131 kb on + strand, within AO353_03155 at 673.132 kb on - strand, within AO353_03155 at 673.132 kb on - strand, within AO353_03155 at 673.132 kb on - strand, within AO353_03155 at 673.267 kb on + strand at 673.267 kb on + strand at 673.268 kb on - strand at 673.268 kb on - strand at 673.307 kb on - strand at 673.307 kb on - strand at 673.332 kb on + strand at 673.332 kb on + strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.359 kb on + strand at 673.360 kb on - strand at 673.371 kb on + strand at 673.371 kb on + strand at 673.372 kb on - strand at 673.372 kb on - strand at 673.372 kb on - strand at 673.378 kb on + strand at 673.378 kb on + strand at 673.378 kb on + strand at 673.379 kb on - strand at 673.379 kb on - strand at 673.379 kb on - strand at 673.379 kb on - strand at 673.379 kb on - strand at 673.513 kb on - strand at 673.553 kb on - strand at 673.649 kb on + strand at 673.769 kb on + strand, within AO353_03160 at 673.769 kb on + strand, within AO353_03160 at 673.769 kb on + strand, within AO353_03160 at 673.784 kb on + strand, within AO353_03160 at 673.785 kb on - strand, within AO353_03160 at 673.860 kb on + strand, within AO353_03160 at 673.860 kb on + strand, within AO353_03160 at 673.938 kb on + strand, within AO353_03160 at 673.938 kb on + strand, within AO353_03160 at 673.938 kb on + strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 674.506 kb on + strand, within AO353_03160 at 674.506 kb on + strand, within AO353_03160 at 674.507 kb on - strand, within AO353_03160 at 674.703 kb on - strand, within AO353_03160 at 674.767 kb on + strand, within AO353_03160 at 674.767 kb on + strand, within AO353_03160 at 674.767 kb on + strand, within AO353_03160 at 674.767 kb on + strand, within AO353_03160 at 674.767 kb on + strand, within AO353_03160 at 674.768 kb on - strand, within AO353_03160 at 674.768 kb on - strand, within AO353_03160 at 674.768 kb on - strand, within AO353_03160 at 674.768 kb on - strand, within AO353_03160 at 674.788 kb on + strand, within AO353_03160 at 674.789 kb on - strand, within AO353_03160 at 674.840 kb on + strand, within AO353_03160 at 674.840 kb on + strand, within AO353_03160 at 674.840 kb on + strand, within AO353_03160 at 674.841 kb on - strand, within AO353_03160 at 674.841 kb on - strand, within AO353_03160 at 674.841 kb on - strand, within AO353_03160 at 674.841 kb on - strand, within AO353_03160 at 674.892 kb on + strand, within AO353_03160 at 674.892 kb on + strand, within AO353_03160 at 674.892 kb on + strand, within AO353_03160 at 674.892 kb on + strand, within AO353_03160 at 674.893 kb on - strand at 674.893 kb on - strand, within AO353_03160 at 674.893 kb on - strand, within AO353_03160 at 674.893 kb on - strand, within AO353_03160 at 674.893 kb on - strand, within AO353_03160 at 674.893 kb on - strand, within AO353_03160 at 674.893 kb on - strand, within AO353_03160 at 674.926 kb on + strand, within AO353_03160 at 674.926 kb on + strand, within AO353_03160 at 674.926 kb on + strand, within AO353_03160 at 674.927 kb on - strand, within AO353_03160 at 674.927 kb on - strand, within AO353_03160 at 674.927 kb on - strand, within AO353_03160 at 674.927 kb on - strand, within AO353_03160 at 674.927 kb on - strand, within AO353_03160 at 675.029 kb on + strand at 675.029 kb on + strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.034 kb on - strand at 675.034 kb on - strand at 675.058 kb on + strand at 675.058 kb on + strand at 675.081 kb on + strand at 675.081 kb on + strand at 675.081 kb on + strand at 675.082 kb on - strand at 675.082 kb on - strand at 675.184 kb on + strand at 675.184 kb on + strand at 675.184 kb on + strand at 675.184 kb on + strand at 675.184 kb on + strand at 675.185 kb on - strand at 675.199 kb on + strand at 675.200 kb on - strand at 675.286 kb on + strand at 675.287 kb on - strand at 675.287 kb on - strand at 675.346 kb on + strand at 675.346 kb on + strand at 675.346 kb on + strand at 675.347 kb on - strand at 675.347 kb on - strand at 675.347 kb on - strand at 675.349 kb on + strand at 675.349 kb on + strand at 675.424 kb on + strand at 675.424 kb on + strand at 675.425 kb on - strand at 675.425 kb on - strand at 675.425 kb on - strand at 675.425 kb on - strand at 675.509 kb on + strand at 675.509 kb on + strand at 675.509 kb on + strand at 675.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10.5 mM remove 672,733 + AO353_03150 0.68 -1.9 672,733 + AO353_03150 0.68 -2.2 672,734 - AO353_03150 0.69 -0.6 672,739 + AO353_03150 0.70 +0.6 672,740 - AO353_03150 0.70 +0.1 672,740 - AO353_03150 0.70 -0.6 672,740 - AO353_03150 0.70 +0.5 672,740 - AO353_03150 0.70 -0.4 672,740 - AO353_03150 0.70 -1.0 672,816 + +1.3 672,816 + +0.1 672,816 + -2.2 672,816 + -0.0 672,817 - +0.7 672,817 - -0.7 672,817 - -1.2 672,817 - +0.4 672,819 + -0.7 672,819 + +1.0 672,819 + +0.1 672,820 - -0.5 672,820 - +1.1 672,832 + -1.1 672,832 + -0.6 672,832 + +1.2 672,832 + -0.8 672,832 + -1.0 672,832 + +0.6 672,832 + -0.2 672,832 + -0.3 672,832 + +1.0 672,833 - +1.0 672,833 - -0.8 672,833 - +0.2 672,833 - -0.6 672,833 - -0.0 672,932 + -1.0 672,932 + +1.0 672,933 - -0.3 672,933 - -0.2 672,933 - +0.4 672,961 + AO353_03155 0.13 +0.2 672,961 + AO353_03155 0.13 +1.1 672,961 + AO353_03155 0.13 -0.0 672,961 + AO353_03155 0.13 +0.2 672,961 + AO353_03155 0.13 +1.0 672,961 + AO353_03155 0.13 -1.1 672,961 + AO353_03155 0.13 -1.1 672,961 + AO353_03155 0.13 -1.2 672,962 - AO353_03155 0.14 +1.0 672,962 - AO353_03155 0.14 +2.6 672,962 - AO353_03155 0.14 -0.9 672,962 - AO353_03155 0.14 -0.5 672,968 + AO353_03155 0.15 +0.6 672,968 + AO353_03155 0.15 -0.6 672,968 + AO353_03155 0.15 +1.4 672,968 + AO353_03155 0.15 +0.4 672,968 + AO353_03155 0.15 -1.6 672,969 - AO353_03155 0.16 -0.6 672,969 - AO353_03155 0.16 +0.1 672,969 - AO353_03155 0.16 -1.2 672,969 - AO353_03155 0.16 +1.5 672,971 + AO353_03155 0.16 -0.8 672,971 + +0.4 672,971 + AO353_03155 0.16 -0.6 672,971 + AO353_03155 0.16 -0.2 672,971 + AO353_03155 0.16 +0.2 672,971 + AO353_03155 0.16 -0.3 672,971 + AO353_03155 0.16 +1.7 672,972 - AO353_03155 0.16 +0.7 672,972 - AO353_03155 0.16 +2.2 672,972 - AO353_03155 0.16 +1.1 672,972 - AO353_03155 0.16 -2.5 672,972 - AO353_03155 0.16 +0.7 672,972 - AO353_03155 0.16 -1.0 673,017 + AO353_03155 0.28 +2.6 673,017 + AO353_03155 0.28 +1.0 673,017 + AO353_03155 0.28 -1.6 673,018 - AO353_03155 0.29 -0.4 673,018 - AO353_03155 0.29 -0.0 673,018 - AO353_03155 0.29 +0.3 673,018 - AO353_03155 0.29 +1.0 673,018 - AO353_03155 0.29 +0.6 673,043 - AO353_03155 0.35 -0.0 673,047 + AO353_03155 0.37 +1.2 673,047 + AO353_03155 0.37 -0.9 673,047 + AO353_03155 0.37 +1.0 673,047 + AO353_03155 0.37 -0.3 673,047 + AO353_03155 0.37 -0.2 673,047 + AO353_03155 0.37 +0.5 673,047 + AO353_03155 0.37 +1.0 673,048 - AO353_03155 0.37 -2.5 673,048 - AO353_03155 0.37 -1.2 673,048 - AO353_03155 0.37 +0.1 673,048 - AO353_03155 0.37 -0.2 673,048 - AO353_03155 0.37 +0.4 673,048 - AO353_03155 0.37 +0.7 673,048 - AO353_03155 0.37 -0.6 673,048 - AO353_03155 0.37 -0.9 673,048 - AO353_03155 0.37 -0.6 673,048 - AO353_03155 0.37 +0.2 673,061 - AO353_03155 0.40 +1.0 673,093 + AO353_03155 0.49 -0.0 673,094 - AO353_03155 0.49 +0.4 673,108 + AO353_03155 0.53 -0.2 673,108 + AO353_03155 0.53 -0.4 673,108 + AO353_03155 0.53 +1.3 673,108 + AO353_03155 0.53 -0.5 673,112 + AO353_03155 0.54 +0.5 673,112 + AO353_03155 0.54 +0.5 673,112 + AO353_03155 0.54 +1.6 673,113 - AO353_03155 0.54 -0.2 673,113 - AO353_03155 0.54 +0.1 673,113 - AO353_03155 0.54 -0.2 673,113 - AO353_03155 0.54 -0.1 673,113 - AO353_03155 0.54 -0.9 673,113 - AO353_03155 0.54 -0.9 673,131 + AO353_03155 0.59 -0.0 673,132 - AO353_03155 0.59 +2.3 673,132 - AO353_03155 0.59 -1.3 673,132 - AO353_03155 0.59 -1.6 673,267 + +0.8 673,267 + +0.4 673,268 - -0.6 673,268 - -1.3 673,307 - -2.2 673,307 - -0.2 673,332 + -0.4 673,332 + -0.6 673,333 - +0.6 673,333 - +0.7 673,333 - -1.0 673,333 - +0.2 673,333 - +1.0 673,333 - +0.5 673,333 - +0.2 673,359 + -0.2 673,360 - -0.3 673,371 + -0.5 673,371 + -0.2 673,372 - -0.7 673,372 - -0.3 673,372 - -0.5 673,378 + +1.0 673,378 + -0.0 673,378 + -0.4 673,379 - -0.5 673,379 - +0.4 673,379 - -1.2 673,379 - +1.0 673,379 - +0.4 673,513 - -1.0 673,553 - +1.3 673,649 + +0.8 673,769 + AO353_03160 0.13 -0.0 673,769 + AO353_03160 0.13 -1.0 673,769 + AO353_03160 0.13 -0.0 673,784 + AO353_03160 0.14 -0.2 673,785 - AO353_03160 0.14 -1.2 673,860 + AO353_03160 0.19 -0.8 673,860 + AO353_03160 0.19 -0.3 673,938 + AO353_03160 0.24 -1.2 673,938 + AO353_03160 0.24 +1.3 673,938 + AO353_03160 0.24 -1.3 673,939 - AO353_03160 0.24 +0.5 673,939 - AO353_03160 0.24 +0.4 673,939 - AO353_03160 0.24 -1.2 673,939 - AO353_03160 0.24 -0.3 673,939 - AO353_03160 0.24 -0.6 673,939 - AO353_03160 0.24 -1.5 673,939 - AO353_03160 0.24 +0.4 673,939 - AO353_03160 0.24 +2.2 673,939 - AO353_03160 0.24 -1.0 674,506 + AO353_03160 0.59 -0.6 674,506 + AO353_03160 0.59 -0.3 674,507 - AO353_03160 0.59 +2.7 674,703 - AO353_03160 0.71 -2.2 674,767 + AO353_03160 0.75 +1.0 674,767 + AO353_03160 0.75 -0.0 674,767 + AO353_03160 0.75 +1.6 674,767 + AO353_03160 0.75 -0.4 674,767 + AO353_03160 0.75 +1.5 674,768 - AO353_03160 0.75 -1.0 674,768 - AO353_03160 0.75 -2.5 674,768 - AO353_03160 0.75 +1.8 674,768 - AO353_03160 0.75 -0.6 674,788 + AO353_03160 0.76 +0.5 674,789 - AO353_03160 0.76 -0.6 674,840 + AO353_03160 0.79 -1.2 674,840 + AO353_03160 0.79 +0.2 674,840 + AO353_03160 0.79 +0.1 674,841 - AO353_03160 0.79 +0.1 674,841 - AO353_03160 0.79 -0.2 674,841 - AO353_03160 0.79 -0.0 674,841 - AO353_03160 0.79 +0.8 674,892 + AO353_03160 0.82 -1.0 674,892 + AO353_03160 0.82 +2.0 674,892 + AO353_03160 0.82 +1.3 674,892 + AO353_03160 0.82 -1.8 674,893 - +0.4 674,893 - AO353_03160 0.83 +0.9 674,893 - AO353_03160 0.83 -0.0 674,893 - AO353_03160 0.83 -1.0 674,893 - AO353_03160 0.83 -0.0 674,893 - AO353_03160 0.83 -1.0 674,893 - AO353_03160 0.83 -0.1 674,926 + AO353_03160 0.85 -1.0 674,926 + AO353_03160 0.85 -1.3 674,926 + AO353_03160 0.85 -0.8 674,927 - AO353_03160 0.85 -0.1 674,927 - AO353_03160 0.85 -0.9 674,927 - AO353_03160 0.85 +0.6 674,927 - AO353_03160 0.85 -0.6 674,927 - AO353_03160 0.85 +0.2 675,029 + -0.9 675,029 + -0.0 675,030 - -0.0 675,030 - -0.1 675,030 - -0.6 675,030 - -1.3 675,030 - -0.0 675,030 - -0.1 675,030 - -0.6 675,034 - -0.6 675,034 - +0.4 675,058 + -0.2 675,058 + +0.2 675,081 + -2.0 675,081 + -0.2 675,081 + +0.3 675,082 - +0.2 675,082 - -1.1 675,184 + +0.3 675,184 + -0.3 675,184 + +1.6 675,184 + +0.5 675,184 + +0.6 675,185 - -0.5 675,199 + -0.6 675,200 - -0.4 675,286 + -0.3 675,287 - +0.1 675,287 - -1.3 675,346 + +1.4 675,346 + -0.8 675,346 + -1.2 675,347 - +0.8 675,347 - -1.0 675,347 - -0.3 675,349 + +1.1 675,349 + -0.0 675,424 + -0.0 675,424 + -1.7 675,425 - -0.7 675,425 - +0.8 675,425 - -0.0 675,425 - -1.0 675,509 + -0.8 675,509 + -0.6 675,509 + +1.7 675,510 - -1.0
Or see this region's nucleotide sequence