Experiment: 1-ethyl-3-methylimidazolium lysine 10.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02670 and AO353_02675 are separated by 35 nucleotides AO353_02675 and AO353_02680 are separated by 298 nucleotides
AO353_02670: AO353_02670 - hypothetical protein, at 567,531 to 568,601
_02670
AO353_02675: AO353_02675 - hypothetical protein, at 568,637 to 569,773
_02675
AO353_02680: AO353_02680 - phosphoribosylaminoimidazole synthetase, at 570,072 to 571,130
_02680
Position (kb) 568
569
570 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 567.862 kb on + strand, within AO353_02670 at 567.862 kb on + strand, within AO353_02670 at 567.862 kb on + strand, within AO353_02670 at 567.862 kb on + strand, within AO353_02670 at 567.862 kb on + strand, within AO353_02670 at 567.863 kb on - strand, within AO353_02670 at 567.863 kb on - strand, within AO353_02670 at 567.863 kb on - strand, within AO353_02670 at 567.863 kb on - strand, within AO353_02670 at 567.943 kb on + strand, within AO353_02670 at 567.943 kb on + strand, within AO353_02670 at 567.944 kb on - strand, within AO353_02670 at 568.029 kb on + strand, within AO353_02670 at 568.029 kb on + strand, within AO353_02670 at 568.030 kb on - strand, within AO353_02670 at 568.102 kb on + strand, within AO353_02670 at 568.102 kb on + strand, within AO353_02670 at 568.103 kb on - strand, within AO353_02670 at 568.273 kb on - strand, within AO353_02670 at 568.273 kb on - strand, within AO353_02670 at 568.273 kb on - strand, within AO353_02670 at 568.273 kb on - strand, within AO353_02670 at 568.339 kb on + strand, within AO353_02670 at 568.339 kb on + strand, within AO353_02670 at 568.339 kb on + strand, within AO353_02670 at 568.339 kb on + strand, within AO353_02670 at 568.339 kb on + strand, within AO353_02670 at 568.340 kb on - strand, within AO353_02670 at 568.340 kb on - strand, within AO353_02670 at 568.340 kb on - strand, within AO353_02670 at 568.340 kb on - strand, within AO353_02670 at 568.419 kb on + strand, within AO353_02670 at 568.490 kb on - strand, within AO353_02670 at 568.490 kb on - strand, within AO353_02670 at 568.490 kb on - strand, within AO353_02670 at 568.490 kb on - strand, within AO353_02670 at 568.497 kb on + strand at 568.498 kb on - strand at 568.498 kb on - strand at 568.520 kb on + strand at 568.520 kb on + strand at 568.520 kb on + strand at 568.520 kb on + strand at 568.520 kb on + strand at 568.520 kb on + strand at 568.520 kb on + strand at 568.521 kb on - strand at 568.521 kb on - strand at 568.521 kb on - strand at 568.540 kb on + strand at 568.540 kb on + strand at 568.540 kb on + strand at 568.540 kb on + strand at 568.540 kb on + strand at 568.540 kb on + strand at 568.540 kb on + strand at 568.541 kb on - strand at 568.541 kb on - strand at 568.618 kb on + strand at 568.618 kb on + strand at 568.618 kb on + strand at 568.618 kb on + strand at 568.618 kb on + strand at 568.618 kb on + strand at 568.618 kb on + strand at 568.618 kb on + strand at 568.619 kb on - strand at 568.619 kb on - strand at 568.619 kb on - strand at 568.619 kb on - strand at 568.619 kb on - strand at 568.619 kb on - strand at 568.619 kb on - strand at 568.619 kb on - strand at 568.619 kb on - strand at 568.619 kb on - strand at 568.620 kb on + strand at 568.620 kb on + strand at 568.620 kb on + strand at 568.620 kb on + strand at 568.620 kb on + strand at 568.620 kb on + strand at 568.620 kb on + strand at 568.620 kb on + strand at 568.621 kb on - strand at 568.621 kb on - strand at 568.621 kb on - strand at 568.621 kb on - strand at 568.621 kb on - strand at 568.621 kb on - strand at 568.621 kb on - strand at 568.621 kb on - strand at 568.621 kb on - strand at 568.622 kb on + strand at 568.622 kb on + strand at 568.622 kb on + strand at 568.622 kb on + strand at 568.622 kb on + strand at 568.622 kb on + strand at 568.622 kb on + strand at 568.622 kb on + strand at 568.622 kb on + strand at 568.622 kb on + strand at 568.622 kb on + strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.623 kb on - strand at 568.638 kb on + strand at 568.806 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on + strand, within AO353_02675 at 569.048 kb on - strand, within AO353_02675 at 569.049 kb on - strand, within AO353_02675 at 569.049 kb on - strand, within AO353_02675 at 569.049 kb on - strand, within AO353_02675 at 569.049 kb on - strand, within AO353_02675 at 569.049 kb on - strand, within AO353_02675 at 569.049 kb on - strand, within AO353_02675 at 569.049 kb on - strand, within AO353_02675 at 569.049 kb on - strand, within AO353_02675 at 569.049 kb on - strand, within AO353_02675 at 569.049 kb on - strand, within AO353_02675 at 569.118 kb on + strand, within AO353_02675 at 569.604 kb on + strand, within AO353_02675 at 569.669 kb on + strand at 569.669 kb on + strand at 569.669 kb on + strand at 569.670 kb on - strand at 569.674 kb on + strand at 569.674 kb on + strand at 569.675 kb on - strand at 569.675 kb on - strand at 569.807 kb on - strand at 569.827 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.829 kb on + strand at 569.830 kb on - strand at 569.830 kb on - strand at 569.830 kb on - strand at 569.830 kb on - strand at 569.830 kb on - strand at 569.830 kb on - strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.834 kb on + strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.835 kb on - strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.836 kb on + strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.837 kb on - strand at 569.881 kb on + strand at 569.890 kb on - strand at 569.890 kb on - strand at 569.890 kb on - strand at 570.011 kb on + strand at 570.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10.5 mM remove 567,862 + AO353_02670 0.31 -0.6 567,862 + AO353_02670 0.31 -1.9 567,862 + AO353_02670 0.31 +1.0 567,862 + AO353_02670 0.31 +0.4 567,862 + AO353_02670 0.31 -0.5 567,863 - AO353_02670 0.31 -0.0 567,863 - AO353_02670 0.31 +1.0 567,863 - AO353_02670 0.31 -0.1 567,863 - AO353_02670 0.31 -0.1 567,943 + AO353_02670 0.38 -0.6 567,943 + AO353_02670 0.38 -1.0 567,944 - AO353_02670 0.39 -0.5 568,029 + AO353_02670 0.46 -0.0 568,029 + AO353_02670 0.46 +0.7 568,030 - AO353_02670 0.47 +0.8 568,102 + AO353_02670 0.53 +0.6 568,102 + AO353_02670 0.53 -0.0 568,103 - AO353_02670 0.53 -0.0 568,273 - AO353_02670 0.69 +0.6 568,273 - AO353_02670 0.69 +0.8 568,273 - AO353_02670 0.69 +0.2 568,273 - AO353_02670 0.69 -0.5 568,339 + AO353_02670 0.75 +0.4 568,339 + AO353_02670 0.75 +0.2 568,339 + AO353_02670 0.75 -1.0 568,339 + AO353_02670 0.75 -0.2 568,339 + AO353_02670 0.75 -0.2 568,340 - AO353_02670 0.76 -0.5 568,340 - AO353_02670 0.76 +1.4 568,340 - AO353_02670 0.76 +0.2 568,340 - AO353_02670 0.76 +0.3 568,419 + AO353_02670 0.83 -0.5 568,490 - AO353_02670 0.90 -0.0 568,490 - AO353_02670 0.90 +0.4 568,490 - AO353_02670 0.90 -1.4 568,490 - AO353_02670 0.90 -0.6 568,497 + -2.2 568,498 - -0.0 568,498 - +0.7 568,520 + +0.1 568,520 + +0.1 568,520 + -2.4 568,520 + +1.1 568,520 + -1.0 568,520 + -0.7 568,520 + -0.4 568,521 - -1.0 568,521 - -0.2 568,521 - -1.0 568,540 + -0.5 568,540 + -0.0 568,540 + -0.6 568,540 + -2.0 568,540 + -0.9 568,540 + -0.0 568,540 + -0.3 568,541 - -0.0 568,541 - +1.3 568,618 + +1.3 568,618 + -1.4 568,618 + +1.0 568,618 + -0.0 568,618 + +0.4 568,618 + +0.3 568,618 + -1.4 568,618 + -1.0 568,619 - -1.9 568,619 - -1.5 568,619 - -0.9 568,619 - -1.4 568,619 - -0.4 568,619 - +1.5 568,619 - +0.5 568,619 - +0.1 568,619 - -1.3 568,619 - -1.6 568,620 + +0.1 568,620 + -0.9 568,620 + +1.5 568,620 + -0.9 568,620 + +1.0 568,620 + +0.1 568,620 + -1.6 568,620 + -0.0 568,621 - +0.4 568,621 - +1.0 568,621 - -2.2 568,621 - +0.1 568,621 - +1.0 568,621 - +0.9 568,621 - -0.5 568,621 - -0.0 568,621 - -2.2 568,622 + +1.0 568,622 + -1.0 568,622 + +1.0 568,622 + -0.0 568,622 + -0.0 568,622 + -0.6 568,622 + +0.7 568,622 + +0.2 568,622 + -1.6 568,622 + -0.0 568,622 + +1.5 568,623 - +0.7 568,623 - +1.0 568,623 - -1.2 568,623 - -0.8 568,623 - -1.6 568,623 - -1.0 568,623 - -2.5 568,623 - +0.7 568,623 - +0.4 568,623 - -0.9 568,623 - +3.0 568,623 - +2.9 568,638 + +0.1 568,806 + AO353_02675 0.15 +0.6 569,048 + AO353_02675 0.36 -0.2 569,048 + AO353_02675 0.36 +1.0 569,048 + AO353_02675 0.36 -0.6 569,048 + AO353_02675 0.36 +0.5 569,048 + AO353_02675 0.36 +0.3 569,048 + AO353_02675 0.36 -1.2 569,048 + AO353_02675 0.36 -1.4 569,048 + AO353_02675 0.36 -1.0 569,048 + AO353_02675 0.36 -0.0 569,048 + AO353_02675 0.36 -0.1 569,048 + AO353_02675 0.36 +0.1 569,048 + AO353_02675 0.36 +0.1 569,048 + AO353_02675 0.36 +0.5 569,048 + AO353_02675 0.36 -0.0 569,048 - AO353_02675 0.36 -0.2 569,049 - AO353_02675 0.36 +1.0 569,049 - AO353_02675 0.36 -0.4 569,049 - AO353_02675 0.36 +1.3 569,049 - AO353_02675 0.36 +1.1 569,049 - AO353_02675 0.36 -0.3 569,049 - AO353_02675 0.36 +0.7 569,049 - AO353_02675 0.36 -0.0 569,049 - AO353_02675 0.36 +1.2 569,049 - AO353_02675 0.36 +0.4 569,049 - AO353_02675 0.36 +2.4 569,118 + AO353_02675 0.42 -0.5 569,604 + AO353_02675 0.85 +1.0 569,669 + +0.1 569,669 + +0.1 569,669 + -0.0 569,670 - +0.2 569,674 + -2.0 569,674 + +0.8 569,675 - -1.2 569,675 - +1.7 569,807 - -0.6 569,827 + -0.3 569,829 + -0.6 569,829 + -0.0 569,829 + -0.4 569,829 + -1.5 569,829 + +1.3 569,829 + -0.2 569,829 + -0.5 569,829 + +0.3 569,829 + -1.9 569,830 - +0.1 569,830 - -0.7 569,830 - +1.4 569,830 - -0.9 569,830 - -0.5 569,830 - +1.0 569,834 + +0.3 569,834 + +0.5 569,834 + +1.2 569,834 + +0.1 569,834 + -1.3 569,834 + -0.5 569,834 + -1.4 569,835 - -0.6 569,835 - -0.3 569,835 - -0.9 569,835 - -0.2 569,835 - -0.0 569,835 - -0.4 569,835 - -0.8 569,836 + -0.0 569,836 + -0.4 569,836 + -0.5 569,836 + -0.0 569,836 + -0.2 569,836 + +0.1 569,836 + -0.2 569,837 - -0.4 569,837 - -1.5 569,837 - -1.6 569,837 - -0.0 569,837 - -1.9 569,837 - +0.6 569,837 - +1.1 569,837 - +1.1 569,837 - -1.4 569,837 - +0.3 569,837 - -0.0 569,837 - -0.2 569,837 - +1.0 569,837 - -0.4 569,881 + -0.6 569,890 - -1.4 569,890 - -0.8 569,890 - -0.0 570,011 + +0.1 570,096 + +0.5
Or see this region's nucleotide sequence