Experiment: 1-ethyl-3-methylimidazolium lysine 10.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02020 and AO353_02025 are separated by 98 nucleotides AO353_02025 and AO353_02030 are separated by 831 nucleotides
AO353_02020: AO353_02020 - hypothetical protein, at 430,504 to 431,469
_02020
AO353_02025: AO353_02025 - mannose-1-phosphate guanyltransferase, at 431,568 to 433,028
_02025
AO353_02030: AO353_02030 - hypothetical protein, at 433,860 to 434,039
_02030
Position (kb) 431
432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 430.632 kb on + strand, within AO353_02020 at 430.632 kb on + strand, within AO353_02020 at 430.702 kb on - strand, within AO353_02020 at 430.748 kb on - strand, within AO353_02020 at 430.786 kb on - strand, within AO353_02020 at 430.862 kb on + strand, within AO353_02020 at 430.862 kb on + strand, within AO353_02020 at 430.863 kb on - strand, within AO353_02020 at 430.951 kb on - strand, within AO353_02020 at 431.064 kb on - strand, within AO353_02020 at 431.064 kb on - strand, within AO353_02020 at 431.133 kb on + strand, within AO353_02020 at 431.159 kb on + strand, within AO353_02020 at 431.159 kb on + strand, within AO353_02020 at 431.189 kb on - strand, within AO353_02020 at 431.189 kb on - strand, within AO353_02020 at 431.189 kb on - strand, within AO353_02020 at 431.231 kb on + strand, within AO353_02020 at 431.231 kb on + strand, within AO353_02020 at 431.232 kb on - strand, within AO353_02020 at 431.232 kb on - strand, within AO353_02020 at 431.375 kb on + strand at 431.407 kb on - strand at 431.452 kb on - strand at 431.452 kb on - strand at 431.455 kb on + strand at 431.456 kb on - strand at 431.495 kb on + strand at 431.522 kb on - strand at 431.549 kb on - strand at 431.577 kb on - strand at 431.580 kb on - strand at 431.596 kb on - strand at 431.606 kb on - strand at 431.628 kb on - strand at 431.670 kb on + strand at 431.671 kb on - strand at 431.671 kb on - strand at 431.709 kb on - strand at 431.861 kb on + strand, within AO353_02025 at 431.902 kb on + strand, within AO353_02025 at 431.902 kb on + strand, within AO353_02025 at 431.902 kb on + strand, within AO353_02025 at 431.903 kb on - strand, within AO353_02025 at 431.903 kb on - strand, within AO353_02025 at 431.903 kb on - strand, within AO353_02025 at 431.903 kb on - strand, within AO353_02025 at 431.903 kb on - strand, within AO353_02025 at 432.090 kb on + strand, within AO353_02025 at 432.090 kb on + strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.091 kb on - strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.094 kb on + strand, within AO353_02025 at 432.095 kb on - strand, within AO353_02025 at 432.095 kb on - strand, within AO353_02025 at 432.095 kb on - strand, within AO353_02025 at 432.095 kb on - strand, within AO353_02025 at 432.095 kb on - strand, within AO353_02025 at 432.117 kb on + strand, within AO353_02025 at 432.117 kb on + strand, within AO353_02025 at 432.254 kb on - strand, within AO353_02025 at 432.254 kb on - strand, within AO353_02025 at 432.313 kb on + strand, within AO353_02025 at 432.313 kb on + strand, within AO353_02025 at 432.314 kb on - strand, within AO353_02025 at 432.330 kb on - strand, within AO353_02025 at 432.369 kb on + strand, within AO353_02025 at 432.370 kb on - strand, within AO353_02025 at 432.370 kb on - strand, within AO353_02025 at 432.442 kb on + strand, within AO353_02025 at 432.445 kb on + strand, within AO353_02025 at 432.445 kb on + strand, within AO353_02025 at 432.445 kb on + strand, within AO353_02025 at 432.446 kb on - strand, within AO353_02025 at 432.446 kb on - strand, within AO353_02025 at 432.446 kb on - strand, within AO353_02025 at 432.446 kb on - strand, within AO353_02025 at 432.459 kb on + strand, within AO353_02025 at 432.459 kb on + strand, within AO353_02025 at 432.459 kb on + strand, within AO353_02025 at 432.459 kb on + strand, within AO353_02025 at 432.459 kb on + strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.460 kb on - strand, within AO353_02025 at 432.463 kb on + strand, within AO353_02025 at 432.464 kb on - strand, within AO353_02025 at 432.553 kb on + strand, within AO353_02025 at 432.554 kb on - strand, within AO353_02025 at 432.623 kb on + strand, within AO353_02025 at 432.624 kb on - strand, within AO353_02025 at 432.624 kb on - strand, within AO353_02025 at 432.636 kb on + strand, within AO353_02025 at 432.637 kb on - strand, within AO353_02025 at 432.695 kb on + strand, within AO353_02025 at 432.695 kb on + strand, within AO353_02025 at 432.696 kb on - strand, within AO353_02025 at 432.758 kb on + strand, within AO353_02025 at 432.761 kb on + strand, within AO353_02025 at 432.762 kb on - strand, within AO353_02025 at 432.762 kb on - strand, within AO353_02025 at 432.783 kb on - strand, within AO353_02025 at 432.783 kb on - strand, within AO353_02025 at 432.855 kb on - strand, within AO353_02025 at 432.864 kb on - strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.874 kb on - strand, within AO353_02025 at 432.874 kb on - strand, within AO353_02025 at 432.918 kb on + strand at 432.918 kb on + strand at 432.919 kb on - strand at 433.042 kb on - strand at 433.064 kb on - strand at 433.067 kb on + strand at 433.067 kb on + strand at 433.067 kb on + strand at 433.067 kb on + strand at 433.068 kb on - strand at 433.068 kb on - strand at 433.068 kb on - strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.088 kb on - strand at 433.088 kb on - strand at 433.089 kb on + strand at 433.089 kb on + strand at 433.089 kb on + strand at 433.090 kb on - strand at 433.172 kb on - strand at 433.189 kb on - strand at 433.198 kb on + strand at 433.198 kb on + strand at 433.198 kb on + strand at 433.199 kb on - strand at 433.199 kb on - strand at 433.216 kb on + strand at 433.217 kb on - strand at 433.217 kb on - strand at 433.217 kb on - strand at 433.255 kb on + strand at 433.255 kb on + strand at 433.255 kb on + strand at 433.256 kb on - strand at 433.261 kb on + strand at 433.261 kb on + strand at 433.261 kb on + strand at 433.360 kb on + strand at 433.360 kb on + strand at 433.360 kb on + strand at 433.451 kb on + strand at 433.451 kb on + strand at 433.510 kb on + strand at 433.511 kb on - strand at 433.555 kb on + strand at 433.555 kb on + strand at 433.555 kb on + strand at 433.556 kb on - strand at 433.556 kb on - strand at 433.556 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.628 kb on + strand at 433.628 kb on + strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.630 kb on + strand at 433.630 kb on + strand at 433.630 kb on + strand at 433.631 kb on - strand at 433.737 kb on + strand at 433.738 kb on - strand at 433.738 kb on - strand at 433.752 kb on + strand at 433.766 kb on + strand at 433.853 kb on + strand at 433.853 kb on + strand at 433.854 kb on - strand at 433.858 kb on + strand at 433.859 kb on - strand at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.890 kb on - strand, within AO353_02030 at 433.890 kb on - strand, within AO353_02030 at 433.961 kb on + strand, within AO353_02030 at 434.005 kb on + strand, within AO353_02030 at 434.020 kb on + strand, within AO353_02030 at 434.021 kb on - strand, within AO353_02030
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10.5 mM remove 430,632 + AO353_02020 0.13 +1.3 430,632 + AO353_02020 0.13 -2.4 430,702 - AO353_02020 0.20 -0.4 430,748 - AO353_02020 0.25 -0.7 430,786 - AO353_02020 0.29 +0.5 430,862 + AO353_02020 0.37 -0.1 430,862 + AO353_02020 0.37 -1.1 430,863 - AO353_02020 0.37 -1.1 430,951 - AO353_02020 0.46 +0.3 431,064 - AO353_02020 0.58 -1.7 431,064 - AO353_02020 0.58 -1.4 431,133 + AO353_02020 0.65 +0.6 431,159 + AO353_02020 0.68 -1.4 431,159 + AO353_02020 0.68 -0.9 431,189 - AO353_02020 0.71 -1.9 431,189 - AO353_02020 0.71 -2.9 431,189 - AO353_02020 0.71 -0.1 431,231 + AO353_02020 0.75 -1.4 431,231 + AO353_02020 0.75 +0.3 431,232 - AO353_02020 0.75 -0.4 431,232 - AO353_02020 0.75 -0.9 431,375 + -2.8 431,407 - -1.1 431,452 - -1.4 431,452 - -0.1 431,455 + -2.7 431,456 - -0.8 431,495 + -0.2 431,522 - -1.2 431,549 - +0.3 431,577 - +1.9 431,580 - -2.1 431,596 - -0.6 431,606 - -0.1 431,628 - -0.4 431,670 + -2.2 431,671 - -0.1 431,671 - -1.5 431,709 - -1.5 431,861 + AO353_02025 0.20 -1.1 431,902 + AO353_02025 0.23 -0.2 431,902 + AO353_02025 0.23 -0.1 431,902 + AO353_02025 0.23 -0.7 431,903 - AO353_02025 0.23 -0.9 431,903 - AO353_02025 0.23 +0.9 431,903 - AO353_02025 0.23 -1.9 431,903 - AO353_02025 0.23 -1.1 431,903 - AO353_02025 0.23 -1.1 432,090 + AO353_02025 0.36 -2.7 432,090 + AO353_02025 0.36 -2.8 432,091 - AO353_02025 0.36 -2.2 432,091 - AO353_02025 0.36 -2.1 432,091 - AO353_02025 0.36 -0.1 432,091 - AO353_02025 0.36 -0.1 432,091 - AO353_02025 0.36 -0.5 432,091 - AO353_02025 0.36 -2.1 432,094 + AO353_02025 0.36 +0.3 432,094 + AO353_02025 0.36 -1.2 432,094 + AO353_02025 0.36 -0.7 432,094 + AO353_02025 0.36 -0.9 432,094 + AO353_02025 0.36 -1.1 432,094 + AO353_02025 0.36 -1.4 432,094 + AO353_02025 0.36 -1.7 432,094 + AO353_02025 0.36 +0.3 432,094 + AO353_02025 0.36 +0.9 432,095 - AO353_02025 0.36 -0.1 432,095 - AO353_02025 0.36 -0.1 432,095 - AO353_02025 0.36 -0.7 432,095 - AO353_02025 0.36 -0.9 432,095 - AO353_02025 0.36 -1.7 432,117 + AO353_02025 0.38 +0.9 432,117 + AO353_02025 0.38 -0.9 432,254 - AO353_02025 0.47 -0.1 432,254 - AO353_02025 0.47 +0.2 432,313 + AO353_02025 0.51 -2.2 432,313 + AO353_02025 0.51 -1.2 432,314 - AO353_02025 0.51 -1.7 432,330 - AO353_02025 0.52 -0.2 432,369 + AO353_02025 0.55 -1.9 432,370 - AO353_02025 0.55 -1.1 432,370 - AO353_02025 0.55 -0.9 432,442 + AO353_02025 0.60 -2.9 432,445 + AO353_02025 0.60 +0.6 432,445 + AO353_02025 0.60 +0.7 432,445 + AO353_02025 0.60 -1.4 432,446 - AO353_02025 0.60 -1.8 432,446 - AO353_02025 0.60 -0.7 432,446 - AO353_02025 0.60 -1.4 432,446 - AO353_02025 0.60 -1.2 432,459 + AO353_02025 0.61 +0.9 432,459 + AO353_02025 0.61 -1.0 432,459 + AO353_02025 0.61 -0.5 432,459 + AO353_02025 0.61 -2.3 432,459 + AO353_02025 0.61 -1.9 432,460 - AO353_02025 0.61 -1.1 432,460 - AO353_02025 0.61 -0.4 432,460 - AO353_02025 0.61 -1.1 432,460 - AO353_02025 0.61 -1.1 432,460 - AO353_02025 0.61 +0.3 432,460 - AO353_02025 0.61 -1.7 432,460 - AO353_02025 0.61 -1.7 432,463 + AO353_02025 0.61 -1.1 432,464 - AO353_02025 0.61 +0.6 432,553 + AO353_02025 0.67 -1.1 432,554 - AO353_02025 0.67 -1.4 432,623 + AO353_02025 0.72 -2.1 432,624 - AO353_02025 0.72 +0.9 432,624 - AO353_02025 0.72 -0.1 432,636 + AO353_02025 0.73 +0.1 432,637 - AO353_02025 0.73 -1.9 432,695 + AO353_02025 0.77 -3.0 432,695 + AO353_02025 0.77 -1.1 432,696 - AO353_02025 0.77 +0.3 432,758 + AO353_02025 0.81 -2.5 432,761 + AO353_02025 0.82 -1.1 432,762 - AO353_02025 0.82 -1.4 432,762 - AO353_02025 0.82 -1.4 432,783 - AO353_02025 0.83 +0.9 432,783 - AO353_02025 0.83 -2.2 432,855 - AO353_02025 0.88 +0.2 432,864 - AO353_02025 0.89 -0.4 432,873 + AO353_02025 0.89 -1.1 432,873 + AO353_02025 0.89 +1.9 432,873 + AO353_02025 0.89 -1.1 432,873 + AO353_02025 0.89 -0.7 432,874 - AO353_02025 0.89 +0.9 432,874 - AO353_02025 0.89 -1.7 432,918 + -0.7 432,918 + -0.1 432,919 - -2.1 433,042 - +0.3 433,064 - +0.9 433,067 + +1.3 433,067 + -0.3 433,067 + -0.8 433,067 + -0.7 433,068 - -1.1 433,068 - -1.3 433,068 - -0.1 433,087 + -0.9 433,087 + -0.7 433,087 + +0.7 433,087 + -1.7 433,087 + -1.4 433,087 + -0.7 433,088 - +0.3 433,088 - -0.3 433,089 + -1.1 433,089 + -1.2 433,089 + +0.3 433,090 - -0.7 433,172 - +2.5 433,189 - -0.1 433,198 + -0.1 433,198 + -0.7 433,198 + -0.1 433,199 - -0.4 433,199 - +0.1 433,216 + +0.9 433,217 - -0.1 433,217 - -1.7 433,217 - -0.1 433,255 + +0.4 433,255 + -0.1 433,255 + +1.3 433,256 - +1.5 433,261 + -2.4 433,261 + -1.7 433,261 + -1.4 433,360 + -0.1 433,360 + +1.3 433,360 + +0.9 433,451 + -1.7 433,451 + +1.4 433,510 + -1.9 433,511 - -0.7 433,555 + +0.3 433,555 + +0.7 433,555 + -1.7 433,556 - +0.1 433,556 - +0.1 433,556 - +0.3 433,565 - +0.2 433,565 - -0.2 433,565 - -0.2 433,565 - -0.8 433,565 - -1.1 433,565 - -0.7 433,628 + -0.1 433,628 + -0.1 433,629 - +0.7 433,629 - +1.9 433,629 - +0.8 433,629 - -0.7 433,630 + +1.3 433,630 + +1.3 433,630 + -0.4 433,631 - +1.7 433,737 + +0.5 433,738 - -1.4 433,738 - +0.7 433,752 + +0.9 433,766 + -0.5 433,853 + -0.7 433,853 + -0.4 433,854 - +1.5 433,858 + +1.9 433,859 - -0.1 433,883 + AO353_02030 0.13 -0.1 433,883 + AO353_02030 0.13 -0.4 433,883 + AO353_02030 0.13 -0.9 433,883 + AO353_02030 0.13 -0.7 433,884 - AO353_02030 0.13 -1.1 433,884 - AO353_02030 0.13 +0.4 433,884 - AO353_02030 0.13 -0.6 433,884 - AO353_02030 0.13 -0.3 433,890 - AO353_02030 0.17 +0.9 433,890 - AO353_02030 0.17 -0.5 433,961 + AO353_02030 0.56 -1.2 434,005 + AO353_02030 0.81 -0.7 434,020 + AO353_02030 0.89 -1.2 434,021 - AO353_02030 0.89 +1.3
Or see this region's nucleotide sequence